Wall clock time and date at job start Tue Mar 31 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00383 * 2 1 4 4 C 1.53002 * 109.46918 * 180.02562 * 3 2 1 5 5 C 1.50699 * 112.84905 * 294.76097 * 4 3 2 6 6 O 1.21284 * 120.00325 * 103.94101 * 5 4 3 7 7 N 1.34778 * 119.99946 * 283.93443 * 5 4 3 8 8 C 1.46924 * 120.63257 * 4.91607 * 7 5 4 9 9 C 1.53622 * 108.54962 * 126.36656 * 8 7 5 10 10 C 1.53046 * 109.24283 * 54.85094 * 9 8 7 11 11 C 1.50693 * 109.46081 * 178.49389 * 10 9 8 12 12 H 1.07996 * 119.99867 * 120.07343 * 11 10 9 13 13 C 1.37881 * 120.00247 * 300.06924 * 11 10 9 14 14 N 1.31514 * 119.99828 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00088 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47081 * 60.00499 * 15 13 11 17 17 H 1.48496 * 109.47317 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47426 * 300.00366 * 15 13 11 19 19 C 1.53040 * 109.54065 * 298.52034 * 10 9 8 20 20 C 1.46932 * 120.63146 * 185.19074 * 7 5 4 21 21 C 1.53781 * 113.69311 * 66.02841 * 4 3 2 22 22 C 1.53782 * 87.07717 * 89.12656 * 21 4 3 23 23 C 1.53775 * 87.08367 * 25.43370 * 22 21 4 24 24 H 1.08995 * 109.47098 * 59.99360 * 1 2 3 25 25 H 1.08997 * 109.47686 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46707 * 299.99854 * 1 2 3 27 27 H 1.08994 * 109.47141 * 60.00308 * 3 2 1 28 28 H 1.08999 * 109.47467 * 300.00231 * 3 2 1 29 29 H 1.09000 * 109.58764 * 246.19831 * 8 7 5 30 30 H 1.09001 * 109.58364 * 6.61994 * 8 7 5 31 31 H 1.09005 * 109.63129 * 294.87101 * 9 8 7 32 32 H 1.08993 * 109.43441 * 174.72674 * 9 8 7 33 33 H 1.09001 * 109.45053 * 58.53544 * 10 9 8 34 34 H 0.96995 * 120.00112 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.49433 * 301.41104 * 19 10 9 36 36 H 1.08994 * 109.49573 * 181.31145 * 19 10 9 37 37 H 1.09002 * 109.58510 * 353.37656 * 20 7 5 38 38 H 1.08998 * 109.58620 * 113.79967 * 20 7 5 39 39 H 1.09001 * 113.61427 * 203.67378 * 21 4 3 40 40 H 1.09000 * 113.61147 * 334.57982 * 21 4 3 41 41 H 1.09000 * 113.61331 * 270.87989 * 22 21 4 42 42 H 1.09003 * 113.61066 * 139.98324 * 22 21 4 43 43 H 1.08997 * 113.61620 * 220.01801 * 23 22 21 44 44 H 1.09005 * 113.69244 * 89.12509 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 4.0734 0.5581 1.2601 6 8 4.4522 -0.5941 1.2511 7 7 4.1337 1.2783 2.3977 8 6 3.5807 2.6384 2.4528 9 6 2.5965 2.7185 3.6296 10 6 3.3060 2.2764 4.9116 11 6 2.3555 2.3883 6.0756 12 1 2.1049 1.5116 6.6543 13 6 1.8059 3.6100 6.4019 14 7 2.1108 4.6776 5.6969 15 14 0.6272 3.7486 7.8443 16 1 1.3154 3.3210 9.0888 17 1 0.1800 5.1576 7.9846 18 1 -0.5514 2.8770 7.6060 19 6 3.7664 0.8241 4.7670 20 6 4.7589 0.7205 3.6047 21 6 4.1058 0.5654 -1.2877 22 6 4.1657 1.9938 -1.8544 23 6 4.2563 2.4830 -0.3993 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.6888 1.8463 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 4.3884 3.3556 2.5991 30 1 3.0582 2.8584 1.5219 31 1 1.7456 2.0639 3.4406 32 1 2.2484 3.7452 3.7420 33 1 4.1712 2.9159 5.0866 34 1 1.7239 5.5369 5.9262 35 1 2.9045 0.1874 4.5672 36 1 4.2509 0.5026 5.6889 37 1 5.0139 -0.3254 3.4340 38 1 5.6608 1.2844 3.8429 39 1 5.0857 0.1070 -1.1548 40 1 3.4016 -0.0823 -1.8099 41 1 3.2514 2.3008 -2.3622 42 1 5.0636 2.1942 -2.4391 43 1 3.6736 3.3833 -0.2043 44 1 5.2769 2.5494 -0.0223 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552418192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:29 Heat of formation + Delta-G solvation = -84.252161 kcal Electronic energy + Delta-G solvation = -23846.298947 eV Core-core repulsion = 20570.404201 eV Total energy + Delta-G solvation = -3275.894747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.98570 -39.53167 -38.34603 -37.85768 -35.32521 -33.10408 -31.80958 -29.97051 -28.19939 -27.19602 -26.57494 -25.57367 -24.35430 -23.77760 -21.87892 -20.33775 -19.48611 -18.55225 -18.05942 -17.39035 -17.13011 -16.81432 -16.50861 -16.32629 -15.62933 -15.37066 -15.08892 -14.85706 -14.62005 -14.36256 -14.01545 -13.57942 -13.38330 -13.26182 -13.19443 -13.01621 -12.84031 -12.77733 -12.48306 -12.29435 -12.17157 -12.15444 -11.89687 -11.50536 -11.39990 -11.26634 -11.01549 -10.86971 -10.77240 -10.43179 -10.30793 -9.52605 -8.08284 -6.21245 1.42137 1.42770 1.50147 1.64612 2.10692 2.43752 2.66016 3.17948 3.34904 3.67915 3.70268 3.83971 3.91736 4.10913 4.23866 4.31266 4.32848 4.40962 4.46340 4.50997 4.52963 4.55774 4.60690 4.69736 4.80099 4.81491 4.82213 4.86863 4.96572 5.06287 5.14182 5.16301 5.20662 5.24405 5.41254 5.46172 5.56258 5.65452 5.97479 6.11455 6.16979 6.38794 6.54895 6.86760 7.22215 7.46013 8.95090 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020848 B = 0.005090 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.753447 B = 5499.893776 C = 5792.988559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.085 3.915 4 C -0.113 4.113 5 C 0.526 3.474 6 O -0.589 6.589 7 N -0.603 5.603 8 C 0.111 3.889 9 C -0.112 4.112 10 C 0.047 3.953 11 C -0.537 4.537 12 H 0.044 0.956 13 C 0.021 3.979 14 N -0.909 5.909 15 Si 0.947 3.053 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.277 1.277 19 C -0.113 4.113 20 C 0.115 3.885 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.119 4.119 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.021 0.979 32 H 0.083 0.917 33 H 0.006 0.994 34 H 0.263 0.737 35 H 0.034 0.966 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -0.926 -15.525 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.009 3.991 4 C -0.116 4.116 5 C 0.316 3.684 6 O -0.470 6.470 7 N -0.334 5.334 8 C -0.010 4.010 9 C -0.151 4.151 10 C 0.029 3.971 11 C -0.575 4.575 12 H 0.062 0.938 13 C -0.178 4.178 14 N -0.549 5.549 15 Si 0.773 3.227 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.202 1.202 19 C -0.151 4.151 20 C -0.008 4.008 21 C -0.146 4.146 22 C -0.158 4.158 23 C -0.156 4.156 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.040 0.960 32 H 0.101 0.899 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.793 -1.487 -15.516 15.607 hybrid contribution -0.902 0.081 1.533 1.781 sum -0.108 -1.405 -13.982 14.053 Atomic orbital electron populations 1.22911 0.79446 1.03683 1.00902 1.87915 1.21415 1.28270 1.95577 1.22397 0.89543 0.85101 1.02107 1.22258 0.95627 1.00942 0.92765 1.20928 0.77160 0.85289 0.85065 1.90585 1.51688 1.18791 1.85936 1.48262 1.57771 1.16855 1.10539 1.22179 0.97180 0.81466 1.00197 1.21853 0.96433 1.02542 0.94246 1.18589 0.94513 0.90816 0.93218 1.21486 1.27635 0.94058 1.14340 0.93792 1.25587 0.97892 0.95582 0.98746 1.69920 1.44941 0.99548 1.40459 0.85786 0.79500 0.77063 0.80317 1.20079 1.20549 1.20211 1.21843 0.97537 0.98965 0.96740 1.21576 0.95613 0.99182 0.84384 1.22723 1.00716 0.98138 0.93072 1.22855 1.04184 0.93551 0.95235 1.23098 1.00718 0.94602 0.97217 0.91567 0.88895 0.94516 0.93142 0.88811 0.91197 0.88195 0.95993 0.89887 0.97573 0.92798 0.94678 0.91895 0.90805 0.90855 0.90947 0.90876 0.87888 0.89170 0.88511 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -12.51 10.39 -148.98 -1.55 -14.05 16 3 C 0.09 2.19 4.78 71.98 0.34 2.54 16 4 C -0.11 -3.07 0.41 -52.40 -0.02 -3.09 16 5 C 0.53 19.32 6.48 87.66 0.57 19.89 16 6 O -0.59 -25.95 15.85 -3.04 -0.05 -26.00 16 7 N -0.60 -22.17 2.97 -818.05 -2.43 -24.60 16 8 C 0.11 3.87 5.20 86.51 0.45 4.31 16 9 C -0.11 -4.96 5.17 30.82 0.16 -4.80 16 10 C 0.05 2.29 2.06 -11.51 -0.02 2.27 16 11 C -0.54 -29.18 8.56 25.60 0.22 -28.96 16 12 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 13 C 0.02 1.13 5.30 84.66 0.45 1.58 16 14 N -0.91 -49.45 11.30 21.45 0.24 -49.21 16 15 Si 0.95 42.63 29.54 68.60 2.03 44.65 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 C -0.11 -4.86 5.30 30.67 0.16 -4.69 16 20 C 0.12 4.40 6.44 86.36 0.56 4.96 16 21 C -0.11 -2.61 6.82 31.12 0.21 -2.39 16 22 C -0.12 -1.93 7.73 31.12 0.24 -1.69 16 23 C -0.12 -2.38 5.53 31.12 0.17 -2.20 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.05 1.43 6.34 -2.39 -0.02 1.41 16 28 H 0.09 1.74 7.31 -2.39 -0.02 1.72 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.10 2.87 3.24 -2.39 -0.01 2.87 16 31 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 4.04 6.03 -2.39 -0.01 4.03 16 33 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 35 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.07 2.89 7.00 -2.39 -0.02 2.87 16 38 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.07 1.94 7.92 -2.39 -0.02 1.92 16 40 H 0.07 1.78 8.00 -2.39 -0.02 1.76 16 41 H 0.10 1.26 7.61 -2.39 -0.02 1.24 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.10 1.62 7.17 -2.39 -0.02 1.61 16 44 H 0.09 1.84 8.09 -2.38 -0.02 1.82 16 Total: -1.00 -66.47 338.36 3.95 -62.52 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.97 Total: 17.13 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 4.74 Total: -10.44 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -2.18 Total: -73.81 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.60 Total: -40.06 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -66.47 3.95 -62.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552418192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.734 kcal (2) G-P(sol) polarization free energy of solvation -66.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds