Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34227 * 117.00175 * 2 1 4 4 O 1.20827 * 119.99651 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00375 * 179.97438 * 3 2 1 6 6 C 1.53001 * 115.55053 * 293.92495 * 5 3 2 7 7 N 1.46900 * 109.47236 * 57.04623 * 6 5 3 8 8 C 1.46846 * 111.00057 * 51.74916 * 7 6 5 9 9 C 1.53041 * 109.52606 * 185.84053 * 8 7 6 10 10 C 1.53111 * 109.27696 * 300.82271 * 9 8 7 11 11 C 1.52999 * 109.52461 * 177.55484 * 10 9 8 12 12 C 1.50703 * 109.46708 * 65.31751 * 11 10 9 13 13 H 1.08001 * 120.00565 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00041 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99912 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99928 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47429 * 89.99552 * 16 14 12 18 18 H 1.48495 * 109.47327 * 210.00047 * 16 14 12 19 19 H 1.48504 * 109.46928 * 329.99781 * 16 14 12 20 20 C 1.53122 * 109.16535 * 57.65300 * 10 9 8 21 21 C 1.46841 * 111.00276 * 175.95844 * 7 6 5 22 22 C 1.52997 * 117.49748 * 79.59209 * 5 3 2 23 23 C 1.53000 * 117.50100 * 148.25392 * 5 3 2 24 24 H 1.09006 * 109.47301 * 299.99954 * 1 2 3 25 25 H 1.08998 * 109.47241 * 60.00189 * 1 2 3 26 26 H 1.09005 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47216 * 177.04542 * 6 5 3 28 28 H 1.08995 * 109.47473 * 297.04547 * 6 5 3 29 29 H 1.09004 * 109.46229 * 305.85505 * 8 7 6 30 30 H 1.09003 * 109.46336 * 65.82620 * 8 7 6 31 31 H 1.09003 * 109.50428 * 180.88053 * 9 8 7 32 32 H 1.09000 * 109.49982 * 60.76125 * 9 8 7 33 33 H 1.09006 * 109.52332 * 297.74875 * 10 9 8 34 34 H 1.09002 * 109.47332 * 185.31005 * 11 10 9 35 35 H 1.08991 * 109.47352 * 305.31767 * 11 10 9 36 36 H 0.96998 * 119.99597 * 180.02562 * 15 14 12 37 37 H 1.08992 * 109.50561 * 182.40469 * 20 10 9 38 38 H 1.08998 * 109.50270 * 62.28226 * 20 10 9 39 39 H 1.09000 * 109.46246 * 294.17931 * 21 7 6 40 40 H 1.09001 * 109.46008 * 54.14596 * 21 7 6 41 41 H 1.09002 * 117.50300 * 215.00521 * 22 5 3 42 42 H 1.09004 * 117.50105 * 0.02562 * 22 5 3 43 43 H 1.08999 * 117.49689 * 359.97143 * 23 5 3 44 44 H 1.08994 * 117.50200 * 144.97989 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.2541 0.7507 1.2627 7 7 3.8580 -0.6452 1.4924 8 6 4.0645 -1.4562 0.2857 9 6 3.5083 -2.8635 0.5140 10 6 4.2222 -3.5016 1.7087 11 6 3.6283 -4.8853 1.9799 12 6 3.9235 -5.7956 0.8158 13 1 4.4788 -5.4243 -0.0329 14 6 3.4838 -7.1023 0.8335 15 7 3.7410 -7.8965 -0.1826 16 14 2.5215 -7.7440 2.3003 17 1 1.0706 -7.5199 2.0770 18 1 2.7785 -9.1974 2.4635 19 1 2.9503 -7.0248 3.5267 20 6 4.0323 -2.6129 2.9411 21 6 4.5734 -1.2128 2.6424 22 6 4.2851 1.0668 -1.3339 23 6 4.2116 2.4642 -0.7135 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 5.3354 0.8055 1.1367 28 1 3.9567 1.3580 2.1175 29 1 3.5481 -0.9936 -0.5554 30 1 5.1307 -1.5180 0.0677 31 1 3.6757 -3.4698 -0.3763 32 1 2.4393 -2.8036 0.7184 33 1 5.2856 -3.5973 1.4890 34 1 4.0706 -5.2993 2.8861 35 1 2.5495 -4.7987 2.1090 36 1 3.4313 -8.8157 -0.1702 37 1 4.5741 -3.0400 3.7848 38 1 2.9716 -2.5490 3.1837 39 1 5.6372 -1.2757 2.4133 40 1 4.4267 -0.5734 3.5129 41 1 5.2480 0.5564 -1.3127 42 1 3.6695 0.8732 -2.2124 43 1 3.5477 3.1894 -1.1841 44 1 5.1260 2.8734 -0.2839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567790079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = -65.824065 kcal Electronic energy + Delta-G solvation = -23313.918986 eV Core-core repulsion = 20038.823342 eV Total energy + Delta-G solvation = -3275.095644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80261 -38.93047 -37.34847 -36.14941 -34.17752 -32.15223 -30.35498 -29.08327 -28.01125 -26.26499 -23.92136 -23.25974 -22.73099 -22.19755 -20.44316 -19.70233 -18.94103 -17.35705 -16.89047 -16.65100 -16.34184 -15.30829 -14.99104 -14.56307 -14.43285 -14.24385 -13.76033 -13.52323 -13.13455 -12.88930 -12.79116 -12.49932 -12.45600 -12.00306 -11.95217 -11.82403 -11.72229 -11.33316 -10.94707 -10.77695 -10.68932 -10.65292 -10.55614 -10.48605 -10.20343 -10.04177 -9.71946 -9.50345 -9.17107 -8.94281 -8.48181 -8.07534 -5.99220 -3.95580 2.15054 2.66513 3.34046 3.34800 3.41452 3.45756 3.99965 4.41804 4.50014 4.52700 4.64801 4.72213 5.15055 5.22326 5.24969 5.29069 5.34016 5.34829 5.43058 5.45789 5.53731 5.60333 5.64379 5.67290 5.74719 5.79412 5.89575 6.02241 6.13578 6.26758 6.39160 6.44205 6.56642 6.63988 6.91442 7.02406 7.13792 7.27812 7.34384 7.44081 7.56301 7.80566 7.86903 8.60625 9.06470 9.64495 11.14302 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.004395 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.438092 B = 6369.228656 C = 6659.209746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.324 6.324 3 C 0.510 3.490 4 O -0.518 6.518 5 C -0.132 4.132 6 C 0.098 3.902 7 N -0.530 5.530 8 C 0.058 3.942 9 C -0.097 4.097 10 C -0.073 4.073 11 C -0.008 4.008 12 C -0.512 4.512 13 H 0.072 0.928 14 C 0.065 3.935 15 N -0.907 5.907 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.266 1.266 20 C -0.113 4.113 21 C 0.060 3.940 22 C -0.153 4.153 23 C -0.142 4.142 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.261 0.739 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.029 0.971 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 19.586 1.083 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.238 6.238 3 C 0.353 3.647 4 O -0.407 6.407 5 C -0.134 4.134 6 C -0.030 4.030 7 N -0.255 5.255 8 C -0.069 4.069 9 C -0.135 4.135 10 C -0.092 4.092 11 C -0.046 4.046 12 C -0.550 4.550 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.191 1.191 20 C -0.151 4.151 21 C -0.067 4.067 22 C -0.190 4.190 23 C -0.179 4.179 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.122 0.878 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.073 19.658 1.139 19.720 hybrid contribution 0.088 -0.464 0.580 0.748 sum -0.985 19.194 1.719 19.296 Atomic orbital electron populations 1.23276 0.76843 1.03932 1.01824 1.86682 1.22541 1.31873 1.82713 1.22204 0.89684 0.81476 0.71315 1.90635 1.66813 1.36876 1.46403 1.20979 0.88482 1.06818 0.97109 1.21532 0.96424 0.90944 0.94116 1.61970 1.57417 1.00300 1.05788 1.22285 0.97921 0.95009 0.91701 1.21507 1.00146 0.92415 0.99404 1.21061 0.99381 0.95530 0.93229 1.19603 0.95523 0.92234 0.97209 1.21165 1.35238 0.94928 1.03636 0.90974 1.25026 0.95842 0.96963 0.95739 1.69919 1.47238 1.06696 1.30767 0.86809 0.80687 0.77806 0.84150 1.20402 1.21602 1.19084 1.21702 1.01334 0.93225 0.98801 1.22071 0.95135 0.96777 0.92742 1.23248 1.02263 0.99199 0.94312 1.23168 1.02125 0.91328 1.01292 0.92163 0.92455 0.87821 0.93629 0.90213 0.90460 0.95911 0.90703 0.91801 0.92578 0.96916 0.97049 0.92908 0.92242 0.91654 0.95263 0.91730 0.87200 0.87869 0.87596 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.55 101.05 1.07 1.46 16 2 O -0.32 -4.52 8.52 -39.25 -0.33 -4.85 16 3 C 0.51 7.02 7.05 36.00 0.25 7.27 16 4 O -0.52 -8.10 16.46 -18.75 -0.31 -8.41 16 5 C -0.13 -1.49 1.32 -155.66 -0.21 -1.69 16 6 C 0.10 1.11 5.02 -3.82 -0.02 1.09 16 7 N -0.53 -7.31 4.13 -234.67 -0.97 -8.27 16 8 C 0.06 0.86 4.16 -3.83 -0.02 0.85 16 9 C -0.10 -1.78 5.15 -26.65 -0.14 -1.92 16 10 C -0.07 -1.43 2.20 -90.50 -0.20 -1.63 16 11 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 12 C -0.51 -14.33 9.00 -34.44 -0.31 -14.64 16 13 H 0.07 2.16 7.32 -52.49 -0.38 1.78 16 14 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 15 N -0.91 -27.90 13.96 55.43 0.77 -27.13 16 16 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 20 C -0.11 -1.83 5.38 -26.65 -0.14 -1.97 16 21 C 0.06 0.83 5.46 -3.83 -0.02 0.80 16 22 C -0.15 -1.43 7.92 -26.69 -0.21 -1.64 16 23 C -0.14 -1.24 9.78 -26.69 -0.26 -1.50 16 24 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 25 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.10 4.48 -51.93 -0.23 0.87 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 1.53 7.05 -51.93 -0.37 1.16 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 35 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 41 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.11 0.96 8.01 -51.93 -0.42 0.55 16 44 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -31.98 345.21 -8.37 -40.36 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.67 Total: -2.04 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.40 Total: -12.03 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.19 Total: -35.40 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.64 Total: -13.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.98 -8.37 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567790079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.469 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds