Wall clock time and date at job start Tue Mar 31 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 117.00117 * 2 1 4 4 O 1.20833 * 119.99771 * 354.76660 * 3 2 1 5 5 C 1.50699 * 119.99844 * 174.48901 * 3 2 1 6 6 C 1.53003 * 109.46716 * 199.20080 * 5 3 2 7 7 C 1.52997 * 115.55170 * 43.82618 * 6 5 3 8 8 N 1.46895 * 109.47437 * 66.41018 * 7 6 5 9 9 C 1.46851 * 110.99978 * 282.18922 * 8 7 6 10 10 C 1.53028 * 109.52531 * 174.16037 * 9 8 7 11 11 C 1.53114 * 109.28273 * 59.17628 * 10 9 8 12 12 C 1.50695 * 109.52748 * 182.44340 * 11 10 9 13 13 H 1.07998 * 120.00744 * 119.68364 * 12 11 10 14 14 C 1.37886 * 119.99651 * 299.68250 * 12 11 10 15 15 N 1.31506 * 120.00118 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99712 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47172 * 60.00267 * 16 14 12 18 18 H 1.48506 * 109.46877 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47079 * 299.99972 * 16 14 12 20 20 C 1.53123 * 109.16005 * 302.34809 * 11 10 9 21 21 C 1.46844 * 111.00297 * 157.97904 * 8 7 6 22 22 C 1.53005 * 117.49470 * 258.11713 * 6 5 3 23 23 C 1.53002 * 60.00038 * 252.51359 * 22 6 5 24 24 H 1.09001 * 109.47331 * 64.88334 * 1 2 3 25 25 H 1.08998 * 109.47545 * 184.88504 * 1 2 3 26 26 H 1.09005 * 109.47155 * 304.88311 * 1 2 3 27 27 H 1.09003 * 109.47039 * 319.19362 * 5 3 2 28 28 H 1.08991 * 109.47158 * 79.19907 * 5 3 2 29 29 H 1.09006 * 109.46658 * 186.40677 * 7 6 5 30 30 H 1.08995 * 109.47016 * 306.40397 * 7 6 5 31 31 H 1.09004 * 109.45492 * 294.17743 * 9 8 7 32 32 H 1.09001 * 109.46128 * 54.14078 * 9 8 7 33 33 H 1.09005 * 109.50616 * 299.23352 * 10 9 8 34 34 H 1.08998 * 109.50464 * 179.12051 * 10 9 8 35 35 H 1.08999 * 109.52396 * 62.24894 * 11 10 9 36 36 H 0.96999 * 120.00290 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.50403 * 297.70924 * 20 11 10 38 38 H 1.09001 * 109.50245 * 177.59434 * 20 11 10 39 39 H 1.09003 * 109.45830 * 305.84898 * 21 8 7 40 40 H 1.08991 * 109.46392 * 65.81822 * 21 8 7 41 41 H 1.09000 * 117.49917 * 0.02562 * 22 6 5 42 42 H 1.08997 * 117.49953 * 145.02515 * 22 6 5 43 43 H 1.09001 * 117.50072 * 252.51187 * 23 22 6 44 44 H 1.09000 * 117.50113 * 107.48923 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4072 2.2074 -0.0955 5 6 3.5610 1.2775 0.1253 6 6 3.9593 2.6848 0.5746 7 6 3.1104 3.2842 1.6974 8 7 3.3195 2.5168 2.9324 9 6 2.5662 1.2565 2.9028 10 6 2.9202 0.4200 4.1344 11 6 2.5769 1.2119 5.3991 12 6 2.9787 0.4177 6.6152 13 1 3.7037 0.8196 7.3074 14 6 2.4205 -0.8221 6.8442 15 7 1.5372 -1.3114 6.0016 16 14 2.9191 -1.8069 8.3512 17 1 2.5931 -1.0348 9.5771 18 1 2.1805 -3.0952 8.3672 19 1 4.3793 -2.0733 8.3076 20 6 3.3372 2.5409 5.3818 21 6 2.9710 3.3160 4.1140 22 6 4.4979 3.6408 -0.4918 23 6 5.4472 3.0404 0.5470 24 1 -0.3634 0.4362 -0.9305 25 1 -0.3634 -1.0239 0.0875 26 1 -0.3634 0.5878 0.8431 27 1 3.9041 0.5505 0.8614 28 1 4.0185 1.0611 -0.8399 29 1 3.4033 4.3214 1.8602 30 1 2.0576 3.2435 1.4182 31 1 1.4977 1.4721 2.9050 32 1 2.8227 0.7012 2.0006 33 1 3.9862 0.1925 4.1257 34 1 2.3493 -0.5083 4.1201 35 1 1.5047 1.4060 5.4276 36 1 1.1443 -2.1834 6.1629 37 1 4.4097 2.3468 5.3927 38 1 3.0641 3.1278 6.2588 39 1 3.5216 4.2564 4.0916 40 1 1.9007 3.5218 4.1105 41 1 4.5679 3.2672 -1.5134 42 1 4.2473 4.6970 -0.3936 43 1 5.8212 3.7017 1.3287 44 1 6.1422 2.2718 0.2090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570827708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:54 Heat of formation + Delta-G solvation = -56.832279 kcal Electronic energy + Delta-G solvation = -23717.588484 eV Core-core repulsion = 20442.882753 eV Total energy + Delta-G solvation = -3274.705731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71921 -38.66847 -37.16107 -36.14081 -33.59381 -31.22321 -30.63772 -29.42261 -27.29394 -26.79325 -24.39069 -22.37889 -21.98505 -21.56715 -21.25999 -18.91961 -18.51487 -17.50702 -16.55597 -16.36269 -16.21317 -15.31702 -15.07429 -14.64947 -14.41389 -13.80085 -13.51620 -13.42601 -13.12248 -12.79761 -12.51089 -12.27010 -12.14921 -11.96096 -11.68569 -11.42529 -11.20269 -10.99626 -10.92812 -10.77574 -10.61369 -10.58087 -10.51200 -10.15671 -9.97247 -9.90544 -9.68116 -9.29199 -8.90937 -8.62354 -8.24972 -7.61683 -5.93572 -3.98728 2.28945 2.82940 3.34947 3.39230 3.42288 3.81700 4.47743 4.51672 4.65750 4.77190 4.99745 5.02299 5.18712 5.26772 5.31001 5.36120 5.44188 5.59070 5.63086 5.69261 5.74973 5.85637 5.95376 5.99600 6.02299 6.17715 6.20931 6.26706 6.30159 6.37283 6.58549 6.65275 6.68288 6.90848 7.13432 7.22171 7.48908 7.67784 7.76582 7.87293 7.88636 8.09451 8.20390 8.52485 9.04669 9.65258 11.12559 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.005342 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.338165 B = 5240.382681 C = 6125.424669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.502 6.502 5 C -0.082 4.082 6 C -0.099 4.099 7 C 0.074 3.926 8 N -0.530 5.530 9 C 0.045 3.955 10 C -0.101 4.101 11 C 0.048 3.952 12 C -0.510 4.510 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.105 4.105 21 C 0.062 3.938 22 C -0.173 4.173 23 C -0.151 4.151 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.018 0.982 36 H 0.259 0.741 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.021 0.979 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 5.438 -14.128 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.390 6.390 5 C -0.119 4.119 6 C -0.100 4.100 7 C -0.054 4.054 8 N -0.255 5.255 9 C -0.082 4.082 10 C -0.139 4.139 11 C 0.030 3.970 12 C -0.548 4.548 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.143 4.143 21 C -0.066 4.066 22 C -0.210 4.210 23 C -0.188 4.188 24 H 0.077 0.923 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.879 5.449 -14.149 15.433 hybrid contribution -0.899 -0.362 0.743 1.221 sum 1.979 5.087 -13.406 14.475 Atomic orbital electron populations 1.23242 0.76319 1.03854 1.02199 1.86520 1.23479 1.33457 1.84109 1.23666 0.92078 0.81315 0.72104 1.90590 1.67372 1.36244 1.44814 1.21132 0.87783 0.98752 1.04230 1.20931 0.96816 0.93407 0.98856 1.21860 0.98673 0.96153 0.88742 1.61920 1.57575 1.05123 1.00879 1.22626 0.94032 0.90678 1.00857 1.21629 1.00356 0.99801 0.92152 1.18667 0.94762 0.90076 0.93501 1.21174 1.24038 1.01999 1.07572 0.92840 1.24961 0.95005 0.97634 0.96360 1.69867 1.28803 1.18348 1.36130 0.86707 0.78640 0.79316 0.83595 1.20429 1.21401 1.20310 1.21672 1.01000 0.98142 0.93511 1.22109 0.97387 0.95611 0.91498 1.23079 1.04232 0.98956 0.94780 1.22913 0.91627 1.03083 1.01215 0.92302 0.88076 0.91712 0.86420 0.88027 0.91591 0.92093 0.96653 0.91997 0.93814 0.89090 0.96371 0.93104 0.92456 0.93330 0.92563 0.96091 0.89043 0.88866 0.88263 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.58 101.05 1.07 1.53 16 2 O -0.36 -5.28 10.46 -39.26 -0.41 -5.69 16 3 C 0.46 7.02 5.37 36.01 0.19 7.21 16 4 O -0.50 -8.54 13.54 -18.76 -0.25 -8.79 16 5 C -0.08 -1.06 5.07 -27.88 -0.14 -1.20 16 6 C -0.10 -1.32 1.65 -154.50 -0.26 -1.58 16 7 C 0.07 1.17 4.68 -3.83 -0.02 1.15 16 8 N -0.53 -9.71 4.57 -234.68 -1.07 -10.78 16 9 C 0.05 0.91 4.46 -3.84 -0.02 0.89 16 10 C -0.10 -2.41 5.12 -26.66 -0.14 -2.55 16 11 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 12 C -0.51 -14.12 8.56 -34.44 -0.29 -14.41 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 15 N -0.89 -25.51 11.37 55.43 0.63 -24.88 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 21 C 0.06 1.16 5.42 -3.83 -0.02 1.14 16 22 C -0.17 -1.89 9.86 -26.73 -0.26 -2.15 16 23 C -0.15 -1.72 9.97 -26.73 -0.27 -1.99 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 27 H 0.12 1.61 6.38 -51.93 -0.33 1.28 16 28 H 0.10 1.02 7.99 -51.93 -0.42 0.61 16 29 H 0.07 0.98 7.70 -51.93 -0.40 0.58 16 30 H 0.06 1.09 5.23 -51.93 -0.27 0.82 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 1.14 2.98 -51.93 -0.15 0.99 16 33 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.88 8.11 -51.93 -0.42 0.45 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -30.12 340.54 -8.92 -39.04 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.34 Total: 1.33 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.59 Total: -11.73 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.44 Total: -35.66 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.66 Total: -14.49 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.12 -8.92 -39.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570827708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.790 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds