Wall clock time and date at job start Tue Mar 31 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42905 * 109.47266 * 2 1 4 4 C 1.42897 * 113.99891 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55310 * 4.41527 * 4 3 2 6 6 C 1.53005 * 117.49626 * 218.74342 * 4 3 2 7 7 C 1.52999 * 59.99973 * 252.48831 * 6 4 3 8 8 H 1.08995 * 117.49529 * 107.48826 * 7 6 4 9 9 C 1.50693 * 117.50064 * 252.51042 * 7 6 4 10 10 O 1.21280 * 119.99991 * 68.62189 * 9 7 6 11 11 N 1.34778 * 120.00264 * 248.62816 * 9 7 6 12 12 C 1.46929 * 120.62505 * 359.71222 * 11 9 7 13 13 C 1.52759 * 109.00668 * 233.58590 * 12 11 9 14 14 C 1.53043 * 109.38595 * 305.59154 * 13 12 11 15 15 C 1.52996 * 109.45945 * 181.26226 * 14 13 12 16 16 C 1.50697 * 109.47581 * 64.93363 * 15 14 13 17 17 H 1.08005 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00754 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99714 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00444 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47168 * 89.99934 * 20 18 16 22 22 H 1.48502 * 109.46903 * 209.99488 * 20 18 16 23 23 H 1.48490 * 109.46900 * 329.99623 * 20 18 16 24 24 C 1.53042 * 109.53648 * 61.24043 * 14 13 12 25 25 C 1.46927 * 120.63413 * 180.02562 * 11 9 7 26 26 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47422 * 300.00207 * 1 2 3 28 28 H 1.09003 * 109.46721 * 60.00393 * 1 2 3 29 29 H 1.08999 * 109.47422 * 239.99793 * 2 1 3 30 30 H 1.09003 * 109.46721 * 119.99607 * 2 1 3 31 31 H 1.09004 * 117.49602 * 359.97438 * 6 4 3 32 32 H 1.09004 * 117.49360 * 144.99883 * 6 4 3 33 33 H 1.08996 * 109.58888 * 353.42567 * 12 11 9 34 34 H 1.09004 * 109.58129 * 113.85374 * 12 11 9 35 35 H 1.09000 * 109.56220 * 185.55599 * 13 12 11 36 36 H 1.09002 * 109.38944 * 65.52129 * 13 12 11 37 37 H 1.08999 * 109.45947 * 301.22274 * 14 13 12 38 38 H 1.09001 * 109.47132 * 184.93685 * 15 14 13 39 39 H 1.09005 * 109.47182 * 304.93444 * 15 14 13 40 40 H 0.96992 * 120.00307 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.49381 * 178.68217 * 24 14 13 42 42 H 1.09004 * 109.49477 * 58.58732 * 24 14 13 43 43 H 1.09005 * 109.58247 * 246.15732 * 25 11 9 44 44 H 1.08999 * 109.58253 * 6.43030 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9771 0.5198 -0.0748 6 6 4.0512 2.5712 0.8501 7 6 4.0430 2.6886 -0.6754 8 1 3.3591 3.4110 -1.1208 9 6 5.3547 2.5060 -1.3944 10 8 5.8848 1.4155 -1.4214 11 7 5.9390 3.5546 -2.0074 12 6 5.3059 4.8804 -1.9885 13 6 5.1744 5.3893 -3.4229 14 6 6.5459 5.3567 -4.1012 15 6 6.4218 5.8956 -5.5277 16 6 6.0320 7.3506 -5.4830 17 1 5.8867 7.8418 -4.5322 18 6 5.8596 8.0546 -6.6559 19 7 6.0360 7.4565 -7.8138 20 14 5.3757 9.8580 -6.6004 21 1 6.5996 10.6982 -6.5669 22 1 4.5778 10.1937 -7.8070 23 1 4.5649 10.1156 -5.3833 24 6 7.0620 3.9165 -4.1433 25 6 7.2175 3.3921 -2.7129 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.3726 3.2164 1.4081 32 1 5.0055 2.3618 1.3336 33 1 4.3170 4.8067 -1.5362 34 1 5.9225 5.5715 -1.4137 35 1 4.7970 6.4118 -3.4141 36 1 4.4820 4.7506 -3.9713 37 1 7.2441 5.9763 -3.5386 38 1 7.3783 5.7913 -6.0400 39 1 5.6589 5.3314 -6.0643 40 1 5.9151 7.9517 -8.6389 41 1 8.0281 3.8909 -4.6474 42 1 6.3519 3.2913 -4.6846 43 1 7.9933 3.9590 -2.1983 44 1 7.4905 2.3371 -2.7360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572288788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:59 Heat of formation + Delta-G solvation = -72.169101 kcal Electronic energy + Delta-G solvation = -22184.537757 eV Core-core repulsion = 18909.166971 eV Total energy + Delta-G solvation = -3275.370786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32189 -38.59528 -37.32094 -35.23265 -33.99865 -32.14331 -31.12995 -30.74567 -28.13581 -25.36563 -23.76309 -23.15626 -22.76915 -22.29205 -21.40835 -19.66077 -18.62954 -17.80149 -16.37451 -16.28956 -16.03711 -15.79417 -15.23835 -14.66040 -14.53029 -14.01267 -13.70356 -13.41028 -13.21547 -12.97529 -12.83818 -12.74278 -12.55813 -12.31385 -12.12628 -11.83198 -11.46689 -11.20958 -11.18754 -10.99556 -10.80843 -10.72998 -10.69193 -10.46614 -10.13475 -9.82877 -9.58651 -9.36686 -9.26947 -8.98243 -8.38250 -8.35134 -6.01032 -4.03224 2.49311 2.89451 3.30107 3.37003 3.38978 3.39677 3.71608 4.44106 4.51925 4.56888 4.73625 4.80593 4.84468 5.01401 5.10283 5.16270 5.28058 5.34021 5.37024 5.45376 5.50600 5.52046 5.56952 5.62205 5.69110 5.76258 5.81767 5.84256 5.98694 6.06673 6.36321 6.38644 6.51112 6.67211 6.95025 6.96618 6.98427 7.09829 7.55115 7.65609 7.80276 7.98636 8.25077 8.40801 9.03326 9.60689 11.10269 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.003346 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.670896 B = 8366.287068 C = 9011.428617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.356 6.356 4 C 0.052 3.948 5 H 0.124 0.876 6 C -0.155 4.155 7 C -0.192 4.192 8 H 0.132 0.868 9 C 0.545 3.455 10 O -0.555 6.555 11 N -0.598 5.598 12 C 0.103 3.897 13 C -0.121 4.121 14 C -0.080 4.080 15 C 0.027 3.973 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.130 4.130 25 C 0.112 3.888 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.024 -11.635 16.935 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.275 6.275 4 C -0.007 4.007 5 H 0.141 0.859 6 C -0.192 4.192 7 C -0.214 4.214 8 H 0.150 0.850 9 C 0.333 3.667 10 O -0.435 6.435 11 N -0.330 5.330 12 C -0.020 4.020 13 C -0.159 4.159 14 C -0.099 4.099 15 C -0.010 4.010 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.168 4.168 25 C -0.010 4.010 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.876 -12.008 16.717 21.405 hybrid contribution -0.151 1.076 -0.300 1.127 sum -6.027 -10.932 16.417 20.624 Atomic orbital electron populations 1.21759 0.93513 1.02392 1.03257 1.22570 0.95548 0.83243 1.00541 1.87817 1.18580 1.27103 1.93976 1.22588 0.81924 0.94354 1.01831 0.85890 1.23420 1.02904 1.02056 0.90851 1.22717 0.97779 1.04296 0.96558 0.84981 1.19503 0.84984 0.83726 0.78455 1.90646 1.65467 1.25318 1.62040 1.48077 1.22971 1.09608 1.52314 1.21912 0.97785 0.82822 0.99446 1.21847 0.98985 1.02211 0.92851 1.21190 0.94964 0.93353 1.00404 1.19123 0.97116 0.95471 0.89241 1.21234 1.46464 0.95596 0.92174 0.92589 1.25028 0.95654 0.98157 0.95655 1.69963 1.49897 1.36366 0.97260 0.86639 0.78524 0.85597 0.77504 1.20747 1.21310 1.19879 1.22022 1.01886 0.98304 0.94556 1.21683 0.84102 1.02182 0.93055 0.90930 0.91825 0.91671 0.92868 0.93027 0.87156 0.87595 0.90170 0.91421 0.89576 0.92282 0.92320 0.96600 0.96639 0.93036 0.91069 0.92078 0.91744 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.51 6.53 37.16 0.24 0.75 16 3 O -0.36 -4.12 10.60 -35.23 -0.37 -4.49 16 4 C 0.05 0.59 5.96 -26.73 -0.16 0.44 16 5 H 0.12 1.43 7.45 -51.93 -0.39 1.05 16 6 C -0.15 -1.55 10.18 -26.73 -0.27 -1.82 16 7 C -0.19 -2.36 5.08 -91.77 -0.47 -2.83 16 8 H 0.13 1.56 6.55 -51.93 -0.34 1.22 16 9 C 0.55 8.26 7.48 -10.99 -0.08 8.18 16 10 O -0.56 -9.89 15.67 5.56 0.09 -9.80 16 11 N -0.60 -8.91 2.98 -173.06 -0.52 -9.43 16 12 C 0.10 1.41 6.32 -3.93 -0.02 1.39 16 13 C -0.12 -2.08 5.17 -26.83 -0.14 -2.22 16 14 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 15 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 16 C -0.52 -13.94 8.39 -34.44 -0.29 -14.23 16 17 H 0.06 1.45 7.06 -52.48 -0.37 1.08 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.13 -2.20 5.36 -26.64 -0.14 -2.34 16 25 C 0.11 1.69 6.43 -3.74 -0.02 1.67 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 0.94 5.51 -51.93 -0.29 0.66 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.32 7.00 -51.93 -0.36 0.95 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -31.40 353.50 -8.73 -40.12 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.58 Total: -0.62 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -1.39 Total: -11.44 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.22 Total: -35.29 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.29 Total: -14.30 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.40 -8.73 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572288788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.045 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds