Wall clock time and date at job start Tue Mar 31 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47183 * 2 1 4 4 C 1.42900 * 114.00043 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.54828 * 4.32986 * 4 3 2 6 6 C 1.52999 * 117.49651 * 218.62625 * 4 3 2 7 7 C 1.52993 * 117.50169 * 150.00321 * 4 3 2 8 8 H 1.09007 * 117.50079 * 214.99761 * 7 4 3 9 9 C 1.50697 * 117.50018 * 359.97438 * 7 4 3 10 10 O 1.21283 * 119.99688 * 0.02562 * 9 7 4 11 11 N 1.34777 * 120.00266 * 180.02562 * 9 7 4 12 12 C 1.46926 * 120.62991 * 179.97438 * 11 9 7 13 13 C 1.53193 * 108.77606 * 233.58412 * 12 11 9 14 14 C 1.53039 * 109.31412 * 305.36714 * 13 12 11 15 15 C 1.52997 * 109.46328 * 181.38421 * 14 13 12 16 16 C 1.50701 * 109.47212 * 174.99782 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 C 1.53039 * 109.53715 * 61.36221 * 14 13 12 25 25 C 1.46921 * 120.63026 * 359.97438 * 11 9 7 26 26 H 1.09003 * 109.46648 * 299.99824 * 1 2 3 27 27 H 1.08998 * 109.47097 * 59.99704 * 1 2 3 28 28 H 1.08996 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46648 * 240.00176 * 2 1 3 30 30 H 1.08998 * 109.47097 * 120.00295 * 2 1 3 31 31 H 1.09010 * 117.49796 * 145.02119 * 6 4 3 32 32 H 1.08992 * 117.50341 * 359.97438 * 6 4 3 33 33 H 1.08999 * 109.58855 * 113.79670 * 12 11 9 34 34 H 1.08997 * 109.59121 * 353.37250 * 12 11 9 35 35 H 1.08997 * 109.50261 * 185.41379 * 13 12 11 36 36 H 1.09006 * 109.49504 * 65.31718 * 13 12 11 37 37 H 1.09002 * 109.45651 * 301.35856 * 14 13 12 38 38 H 1.09002 * 109.47153 * 54.99784 * 15 14 13 39 39 H 1.09001 * 109.46832 * 294.99975 * 15 14 13 40 40 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 41 41 H 1.08991 * 109.50034 * 58.59144 * 24 14 13 42 42 H 1.09010 * 109.49923 * 178.68737 * 24 14 13 43 43 H 1.09003 * 109.58847 * 246.20363 * 25 11 9 44 44 H 1.08999 * 109.58748 * 6.62380 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9769 0.5197 -0.0752 6 6 4.0517 2.5727 0.8465 7 6 4.0421 2.6876 -0.6791 8 1 4.9903 2.5548 -1.2002 9 6 3.0958 3.6849 -1.2963 10 8 1.8986 3.4982 -1.2429 11 7 3.5799 4.7843 -1.9075 12 6 2.6699 5.7653 -2.5142 13 6 3.0858 5.9882 -3.9717 14 6 4.5627 6.3861 -4.0214 15 6 4.9729 6.6431 -5.4728 16 6 6.3905 7.1529 -5.5114 17 1 6.9438 7.2804 -4.5927 18 6 6.9815 7.4556 -6.7198 19 7 6.3080 7.2998 -7.8385 20 14 8.7390 8.0868 -6.7677 21 1 9.6452 7.0742 -6.1688 22 1 9.1370 8.3364 -8.1765 23 1 8.8317 9.3522 -5.9961 24 6 5.4170 5.2559 -3.4427 25 6 5.0275 5.0245 -1.9796 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.0065 2.3643 1.3295 32 1 3.3737 3.2188 1.4039 33 1 2.7312 6.7069 -1.9687 34 1 1.6484 5.3866 -2.4796 35 1 2.4799 6.7837 -4.4054 36 1 2.9377 5.0680 -4.5370 37 1 4.7145 7.2924 -3.4352 38 1 4.3074 7.3862 -5.9123 39 1 4.9051 5.7144 -6.0393 40 1 6.7237 7.5131 -8.6886 41 1 5.2470 4.3427 -4.0129 42 1 6.4705 5.5302 -3.4997 43 1 5.2816 5.9056 -1.3904 44 1 5.5616 4.1569 -1.5922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572288790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:04 Heat of formation + Delta-G solvation = -66.912771 kcal Electronic energy + Delta-G solvation = -22435.920391 eV Core-core repulsion = 19160.777537 eV Total energy + Delta-G solvation = -3275.142854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18271 -38.44192 -37.04654 -35.18722 -33.90429 -32.09659 -30.94903 -30.65739 -28.06503 -25.31142 -23.71683 -23.00620 -22.69186 -22.27233 -21.35192 -19.59879 -18.61707 -17.59531 -16.33279 -16.19401 -15.70109 -15.62362 -15.14843 -14.56485 -14.47649 -13.91671 -13.65346 -13.42260 -13.04623 -12.82566 -12.70616 -12.65514 -12.49694 -12.25604 -12.09154 -11.78078 -11.32054 -11.16947 -11.10887 -10.97266 -10.76399 -10.67014 -10.60680 -10.43557 -10.10213 -9.70271 -9.43781 -9.21786 -9.17311 -8.96588 -8.35578 -8.22659 -5.99994 -4.02135 2.68548 3.19621 3.31335 3.36679 3.37905 3.38151 3.76544 4.44626 4.48979 4.63381 4.77421 4.90471 4.93094 5.07852 5.19398 5.21620 5.29618 5.35051 5.41254 5.50016 5.55482 5.56804 5.61655 5.74235 5.76975 5.81571 5.84346 6.01304 6.04605 6.13972 6.42141 6.44123 6.55944 6.75975 6.99920 7.02335 7.12701 7.16608 7.66888 7.70765 7.82562 7.99973 8.42225 8.49465 9.04292 9.61501 11.11272 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031397 B = 0.003250 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.586209 B = 8614.189901 C = 8913.115125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.324 6.324 4 C 0.049 3.951 5 H 0.116 0.884 6 C -0.160 4.160 7 C -0.195 4.195 8 H 0.130 0.870 9 C 0.540 3.460 10 O -0.525 6.525 11 N -0.606 5.606 12 C 0.114 3.886 13 C -0.129 4.129 14 C -0.080 4.080 15 C 0.028 3.972 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.120 4.120 25 C 0.105 3.895 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 -12.329 16.925 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.241 6.241 4 C -0.011 4.011 5 H 0.134 0.866 6 C -0.198 4.198 7 C -0.216 4.216 8 H 0.147 0.853 9 C 0.328 3.672 10 O -0.401 6.401 11 N -0.340 5.340 12 C -0.008 4.008 13 C -0.167 4.167 14 C -0.099 4.099 15 C -0.009 4.009 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.158 4.158 25 C -0.018 4.018 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.884 -12.244 16.751 21.567 hybrid contribution 1.418 0.279 -0.334 1.483 sum -4.466 -11.965 16.417 20.800 Atomic orbital electron populations 1.21700 0.93647 1.01831 1.03472 1.22534 0.95873 0.84107 0.99655 1.88178 1.17089 1.25277 1.93574 1.22545 0.83558 0.92982 1.01969 0.86647 1.23397 1.02877 1.02453 0.91080 1.22822 1.01583 1.00120 0.97069 0.85253 1.19432 0.88335 0.81098 0.78371 1.90717 1.15485 1.75394 1.58540 1.48114 1.07711 1.22317 1.55823 1.21622 0.94086 0.91077 0.94037 1.22025 0.98507 1.01679 0.94518 1.21181 0.91638 0.96457 1.00605 1.19120 0.96022 0.96789 0.88992 1.21205 0.98520 1.43481 0.92297 0.92655 1.25026 0.97748 0.95850 0.95858 1.69954 1.37005 1.48921 0.97615 0.86705 0.85225 0.79402 0.76925 1.20290 1.21378 1.20300 1.21906 1.01548 0.99552 0.92788 1.21920 0.79633 1.01189 0.99028 0.91963 0.91535 0.91335 0.93434 0.93627 0.87234 0.87757 0.92032 0.89780 0.91230 0.92154 0.92393 0.96620 0.96677 0.92988 0.92363 0.89793 0.91700 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.06 0.55 6.53 37.16 0.24 0.79 16 3 O -0.32 -4.41 8.48 -57.36 -0.49 -4.89 16 4 C 0.05 0.53 6.40 -26.74 -0.17 0.36 16 5 H 0.12 0.91 7.93 -51.93 -0.41 0.50 16 6 C -0.16 -1.57 10.18 -26.73 -0.27 -1.84 16 7 C -0.19 -2.32 5.13 -91.78 -0.47 -2.79 16 8 H 0.13 1.29 6.57 -51.93 -0.34 0.95 16 9 C 0.54 8.61 7.48 -10.99 -0.08 8.53 16 10 O -0.53 -10.11 14.34 -16.58 -0.24 -10.35 16 11 N -0.61 -9.36 2.97 -172.80 -0.51 -9.87 16 12 C 0.11 1.81 6.43 -3.71 -0.02 1.78 16 13 C -0.13 -2.26 5.36 -26.61 -0.14 -2.40 16 14 C -0.08 -1.57 2.10 -90.58 -0.19 -1.76 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 16 C -0.52 -14.01 8.39 -34.44 -0.29 -14.30 16 17 H 0.06 1.43 7.05 -52.49 -0.37 1.06 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.12 -2.08 5.19 -26.63 -0.14 -2.21 16 25 C 0.10 1.46 6.34 -3.73 -0.02 1.44 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.39 7.01 -51.93 -0.36 1.02 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.53 6.91 -51.92 -0.36 1.17 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.88 5.51 -51.93 -0.29 0.59 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -32.77 351.07 -9.24 -42.01 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.61 Total: -1.11 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -1.40 Total: -11.35 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.22 Total: -35.80 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.72 Total: -15.24 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.77 -9.24 -42.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572288790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.905 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds