Wall clock time and date at job start Tue Mar 31 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.42902 * 114.00370 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55045 * 355.67091 * 4 3 2 6 6 C 1.53003 * 117.50014 * 141.37503 * 4 3 2 7 7 C 1.52996 * 60.00069 * 107.48923 * 6 4 3 8 8 H 1.08992 * 117.50425 * 252.51148 * 7 6 4 9 9 C 1.50701 * 117.51822 * 107.47540 * 7 6 4 10 10 O 1.21280 * 120.00601 * 291.38121 * 9 7 6 11 11 N 1.34781 * 119.99577 * 111.37185 * 9 7 6 12 12 C 1.46929 * 120.63093 * 359.72482 * 11 9 7 13 13 C 1.52761 * 109.00583 * 233.58350 * 12 11 9 14 14 C 1.53038 * 109.38367 * 305.58738 * 13 12 11 15 15 C 1.52997 * 109.44956 * 181.25508 * 14 13 12 16 16 C 1.50707 * 109.47163 * 64.94187 * 15 14 13 17 17 H 1.08005 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00053 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99913 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00210 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47271 * 89.99890 * 20 18 16 22 22 H 1.48500 * 109.47176 * 210.00312 * 20 18 16 23 23 H 1.48504 * 109.46766 * 329.99659 * 20 18 16 24 24 C 1.53037 * 109.53915 * 61.24106 * 14 13 12 25 25 C 1.46926 * 120.62760 * 180.02562 * 11 9 7 26 26 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 31 31 H 1.08995 * 117.50048 * 214.98018 * 6 4 3 32 32 H 1.09003 * 117.49687 * 0.02562 * 6 4 3 33 33 H 1.08996 * 109.58663 * 353.41684 * 12 11 9 34 34 H 1.08993 * 109.58285 * 113.84500 * 12 11 9 35 35 H 1.08999 * 109.55930 * 185.55532 * 13 12 11 36 36 H 1.08999 * 109.38832 * 65.51632 * 13 12 11 37 37 H 1.09000 * 109.46119 * 301.22094 * 14 13 12 38 38 H 1.08998 * 109.47343 * 184.93498 * 15 14 13 39 39 H 1.08999 * 109.47575 * 304.94386 * 15 14 13 40 40 H 0.96994 * 119.99832 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.49920 * 178.68048 * 24 14 13 42 42 H 1.09002 * 109.49432 * 58.58720 * 24 14 13 43 43 H 1.09000 * 109.58611 * 246.15534 * 25 11 9 44 44 H 1.08995 * 109.59209 * 6.43747 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9770 0.5197 0.0752 6 6 4.0519 2.5726 -0.8465 7 6 4.0421 2.6876 0.6791 8 1 3.3577 3.4091 1.1252 9 6 5.3529 2.5039 1.3996 10 8 5.8830 1.4134 1.4257 11 7 5.9363 3.5516 2.0149 12 6 5.3094 4.8801 1.9868 13 6 6.3227 5.8974 1.4654 14 6 7.5981 5.8215 2.3077 15 6 8.6023 6.8614 1.8066 16 6 8.0511 8.2447 2.0387 17 1 7.0813 8.3696 2.4975 18 6 8.7844 9.3507 1.6646 19 7 8.3031 10.5579 1.8668 20 14 10.4613 9.1347 0.8705 21 1 10.3036 9.0490 -0.6036 22 1 11.3228 10.2957 1.2097 23 1 11.0905 7.8875 1.3744 24 6 8.2088 4.4235 2.1870 25 6 7.2144 3.3882 2.7209 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 5.0065 2.3643 -1.3294 32 1 3.3737 3.2188 -1.4039 33 1 4.4412 4.8607 1.3282 34 1 5.0004 5.1596 2.9940 35 1 5.9010 6.9002 1.5333 36 1 6.5595 5.6719 0.4256 37 1 7.3567 6.0234 3.3513 38 1 9.5419 6.7493 2.3474 39 1 8.7767 6.7140 0.7408 40 1 8.8191 11.3360 1.6039 41 1 9.1296 4.3772 2.7684 42 1 8.4277 4.2113 1.1405 43 1 7.0641 3.5435 3.7893 44 1 7.6014 2.3840 2.5486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572288791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:06 Heat of formation + Delta-G solvation = -69.178674 kcal Electronic energy + Delta-G solvation = -22206.440068 eV Core-core repulsion = 18931.198957 eV Total energy + Delta-G solvation = -3275.241111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35908 -38.63341 -37.39266 -35.25204 -34.07101 -32.17533 -31.17592 -30.79462 -28.65194 -25.46830 -23.73771 -23.18893 -22.77965 -22.30099 -21.22207 -19.70278 -18.59262 -17.89575 -16.75877 -16.35045 -16.08486 -15.82323 -15.10939 -14.88167 -14.38169 -14.06533 -13.78744 -13.39827 -13.22854 -13.11931 -12.99557 -12.77574 -12.53352 -12.30832 -12.26398 -12.09052 -11.50959 -11.46719 -11.22330 -11.16837 -10.89524 -10.72943 -10.67325 -10.35201 -9.90456 -9.89053 -9.61639 -9.48798 -9.38419 -9.07727 -8.55325 -8.44121 -6.06189 -4.03642 2.47291 2.84058 3.29127 3.36479 3.37221 3.40621 3.72208 4.43710 4.50580 4.56561 4.70856 4.77755 4.81778 4.99875 5.07712 5.11650 5.24299 5.27444 5.28790 5.39047 5.45862 5.47869 5.57486 5.59065 5.61906 5.73795 5.78958 5.80070 5.90289 5.99843 6.25945 6.29242 6.41129 6.59288 6.77954 6.83839 6.94211 6.95148 7.24939 7.40562 7.51233 7.78059 8.21088 8.51548 8.98234 9.57015 11.07013 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030462 B = 0.003188 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.955125 B = 8779.691834 C = 9175.832984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.051 3.949 5 H 0.123 0.877 6 C -0.152 4.152 7 C -0.192 4.192 8 H 0.131 0.869 9 C 0.546 3.454 10 O -0.555 6.555 11 N -0.599 5.599 12 C 0.103 3.897 13 C -0.120 4.120 14 C -0.072 4.072 15 C -0.009 4.009 16 C -0.516 4.516 17 H 0.074 0.926 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.132 4.132 25 C 0.112 3.888 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.016 0.984 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.420 -18.946 -3.152 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.275 6.275 4 C -0.008 4.008 5 H 0.141 0.859 6 C -0.190 4.190 7 C -0.213 4.213 8 H 0.149 0.851 9 C 0.334 3.666 10 O -0.435 6.435 11 N -0.331 5.331 12 C -0.020 4.020 13 C -0.158 4.158 14 C -0.091 4.091 15 C -0.047 4.047 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.170 4.170 25 C -0.010 4.010 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.225 -19.160 -3.138 22.427 hybrid contribution 1.066 0.157 -0.356 1.135 sum -10.159 -19.003 -3.494 21.829 Atomic orbital electron populations 1.21758 0.93528 1.02376 1.03242 1.22562 0.95523 0.83289 1.00532 1.87814 1.18647 1.27051 1.93996 1.22604 0.81835 0.94333 1.02026 0.85911 1.23431 1.03005 1.01798 0.90784 1.22693 0.97650 1.04153 0.96830 0.85132 1.19530 0.85123 0.83779 0.78182 1.90646 1.65466 1.25462 1.61900 1.48083 1.22897 1.09392 1.52723 1.21904 0.96547 0.81671 1.01831 1.21835 0.95556 0.99020 0.99428 1.21010 0.95536 0.93035 0.99526 1.19618 0.94624 0.94724 0.95689 1.21133 1.05368 0.88603 1.40267 0.90835 1.25029 0.97813 0.95246 0.95448 1.69912 1.38357 0.97760 1.48289 0.86809 0.84840 0.77830 0.79968 1.20404 1.21485 1.19083 1.22054 0.97881 0.95666 1.01400 1.21656 0.83147 1.00605 0.95583 0.91765 0.91756 0.90941 0.92961 0.92983 0.87475 0.87025 0.90008 0.91354 0.89081 0.92301 0.91692 0.96604 0.97131 0.92791 0.91081 0.92092 0.91626 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.48 6.53 37.16 0.24 0.72 16 3 O -0.36 -3.98 10.60 -35.23 -0.37 -4.35 16 4 C 0.05 0.57 5.96 -26.73 -0.16 0.41 16 5 H 0.12 1.40 7.45 -51.93 -0.39 1.01 16 6 C -0.15 -1.61 10.18 -26.73 -0.27 -1.89 16 7 C -0.19 -2.31 4.90 -91.77 -0.45 -2.76 16 8 H 0.13 1.45 6.83 -51.93 -0.35 1.09 16 9 C 0.55 8.06 7.48 -10.98 -0.08 7.98 16 10 O -0.56 -9.65 15.67 5.56 0.09 -9.57 16 11 N -0.60 -8.65 2.98 -173.06 -0.52 -9.17 16 12 C 0.10 1.39 6.27 -3.93 -0.02 1.37 16 13 C -0.12 -2.01 5.17 -26.83 -0.14 -2.15 16 14 C -0.07 -1.33 2.10 -90.58 -0.19 -1.52 16 15 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 16 C -0.52 -13.98 8.94 -34.44 -0.31 -14.29 16 17 H 0.07 2.12 7.30 -52.48 -0.38 1.73 16 18 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 19 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 20 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 24 C -0.13 -2.08 5.36 -26.63 -0.14 -2.22 16 25 C 0.11 1.62 6.43 -3.73 -0.02 1.60 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.95 5.68 -51.93 -0.30 0.66 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.68 6.91 -51.93 -0.36 1.32 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 39 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -31.54 350.12 -8.36 -39.90 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.57 Total: -0.43 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.36 Total: -11.93 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.26 Total: -35.71 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.29 Total: -13.92 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.54 -8.36 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572288791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.281 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds