Wall clock time and date at job start Tue Mar 31 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99818 * 2 1 4 4 H 1.08997 * 109.47595 * 357.72963 * 3 2 1 5 5 C 1.50696 * 109.47140 * 117.73471 * 3 2 1 6 6 O 1.21281 * 120.00094 * 4.99342 * 5 3 2 7 7 N 1.34776 * 120.00047 * 184.99677 * 5 3 2 8 8 C 1.46928 * 120.62986 * 359.71817 * 7 5 3 9 9 C 1.53624 * 108.54435 * 126.37021 * 8 7 5 10 10 C 1.53035 * 109.24491 * 54.85510 * 9 8 7 11 11 C 1.52996 * 109.46100 * 178.49275 * 10 9 8 12 12 C 1.50697 * 109.47170 * 295.06847 * 11 10 9 13 13 H 1.07991 * 120.00021 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99949 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00055 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99904 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47284 * 90.00329 * 16 14 12 18 18 H 1.48508 * 109.46977 * 210.00124 * 16 14 12 19 19 H 1.48497 * 109.47222 * 329.99999 * 16 14 12 20 20 C 1.53042 * 109.53775 * 298.51459 * 10 9 8 21 21 C 1.46931 * 120.63600 * 179.97438 * 7 5 3 22 22 C 1.53009 * 109.46736 * 237.73109 * 3 2 1 23 23 C 1.52996 * 117.49833 * 351.72560 * 22 3 2 24 24 C 1.53000 * 117.49991 * 60.35180 * 22 3 2 25 25 H 1.08993 * 109.47014 * 173.43609 * 1 2 3 26 26 H 1.08998 * 109.47034 * 293.43760 * 1 2 3 27 27 H 1.09002 * 109.46862 * 53.43682 * 1 2 3 28 28 H 1.09004 * 109.58692 * 246.20100 * 8 7 5 29 29 H 1.08997 * 109.58534 * 6.62665 * 8 7 5 30 30 H 1.09005 * 109.63324 * 294.86160 * 9 8 7 31 31 H 1.09003 * 109.46227 * 174.74246 * 9 8 7 32 32 H 1.08995 * 109.45032 * 58.52614 * 10 9 8 33 33 H 1.08999 * 109.47369 * 55.07376 * 11 10 9 34 34 H 1.09005 * 109.47487 * 175.06870 * 11 10 9 35 35 H 0.96995 * 119.99867 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.49538 * 301.41235 * 20 10 9 37 37 H 1.09001 * 109.52473 * 181.33236 * 20 10 9 38 38 H 1.09008 * 109.57754 * 353.37400 * 21 7 5 39 39 H 1.08996 * 109.58736 * 113.65165 * 21 7 5 40 40 H 1.09003 * 115.56072 * 206.03842 * 22 3 2 41 41 H 1.08999 * 117.49733 * 214.97397 * 23 22 3 42 42 H 1.08998 * 117.50176 * 0.02562 * 23 22 3 43 43 H 1.09000 * 117.49546 * 359.97438 * 24 22 3 44 44 H 1.08992 * 117.49972 * 145.02260 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2200 2.0550 -0.0407 5 6 2.8186 1.4954 1.2575 6 8 2.9648 0.5718 2.0298 7 7 3.3789 2.6918 1.5242 8 6 3.2157 3.8185 0.5953 9 6 2.6640 5.0203 1.3772 10 6 3.5827 5.3138 2.5654 11 6 3.0584 6.5334 3.3261 12 6 3.1447 7.7515 2.4430 13 1 3.5348 7.6645 1.4398 14 6 2.7265 8.9771 2.9163 15 7 2.8022 10.0402 2.1458 16 14 2.0523 9.1276 4.6519 17 1 3.1641 9.4228 5.5910 18 1 1.0563 10.2280 4.7023 19 1 1.4004 7.8517 5.0420 20 6 3.6119 4.1031 3.5011 21 6 4.1693 2.8927 2.7464 22 6 2.9212 1.4581 -1.2198 23 6 3.1960 0.2074 -2.0571 24 6 2.2825 1.3073 -2.6019 25 1 -0.3633 -1.0209 -0.1175 26 1 -0.3633 0.4087 0.9429 27 1 -0.3633 0.6122 -0.8254 28 1 4.1810 4.0751 0.1589 29 1 2.5170 3.5427 -0.1944 30 1 1.6616 4.7924 1.7400 31 1 2.6248 5.8918 0.7237 32 1 4.5904 5.5173 2.2034 33 1 2.0202 6.3646 3.6120 34 1 3.6607 6.6901 4.2210 35 1 2.5077 10.9024 2.4786 36 1 2.6006 3.8838 3.8439 37 1 4.2476 4.3212 4.3593 38 1 4.0999 2.0057 3.3762 39 1 5.2114 3.0726 2.4822 40 1 3.7299 2.1815 -1.1153 41 1 4.1854 0.1081 -2.5036 42 1 2.7275 -0.7240 -1.7394 43 1 1.2133 1.0990 -2.6421 44 1 2.6709 1.9314 -3.4066 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575184438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:47 Heat of formation + Delta-G solvation = -63.311543 kcal Electronic energy + Delta-G solvation = -23032.442442 eV Core-core repulsion = 19757.455749 eV Total energy + Delta-G solvation = -3274.986693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51852 -38.52987 -37.18132 -36.14429 -34.07835 -32.25175 -31.08787 -29.24625 -28.26197 -26.35649 -24.58162 -22.96523 -22.52310 -21.93917 -20.83260 -19.93353 -18.95574 -17.30340 -16.90952 -16.71338 -16.28092 -15.62761 -15.02749 -14.66443 -14.48082 -14.35321 -13.82972 -13.66447 -13.31403 -13.27146 -12.97344 -12.82209 -12.35126 -12.14731 -11.80894 -11.71145 -11.57190 -11.48359 -11.16423 -10.96786 -10.71894 -10.69084 -10.48733 -10.35843 -10.24691 -9.88603 -9.74873 -9.52297 -9.22818 -9.09795 -8.56841 -8.43184 -6.07975 -4.05473 2.61624 2.86215 3.27902 3.36008 3.39490 3.53958 3.75432 4.33990 4.42261 4.52631 4.66065 4.85369 4.91181 5.04115 5.13378 5.15573 5.24900 5.28422 5.31356 5.40983 5.41846 5.44544 5.50176 5.58657 5.66736 5.70508 5.88209 5.89677 5.99089 6.07287 6.24929 6.25600 6.38727 6.55978 6.75254 6.81662 6.84704 6.92602 7.21561 7.40126 7.51112 7.76347 8.25786 8.49673 8.96359 9.55370 11.05196 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.003982 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.860004 B = 7029.518092 C = 7365.703828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.104 3.896 4 H 0.093 0.907 5 C 0.507 3.493 6 O -0.533 6.533 7 N -0.604 5.604 8 C 0.099 3.901 9 C -0.120 4.120 10 C -0.072 4.072 11 C -0.010 4.010 12 C -0.516 4.516 13 H 0.074 0.926 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.877 3.123 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.266 1.266 20 C -0.132 4.132 21 C 0.113 3.887 22 C -0.174 4.174 23 C -0.159 4.159 24 C -0.170 4.170 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.015 0.985 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.066 -17.307 -7.263 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.272 6.272 3 C 0.043 3.957 4 H 0.111 0.889 5 C 0.293 3.707 6 O -0.409 6.409 7 N -0.339 5.339 8 C -0.024 4.024 9 C -0.158 4.158 10 C -0.091 4.091 11 C -0.047 4.047 12 C -0.554 4.554 13 H 0.092 0.908 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.170 4.170 21 C -0.009 4.009 22 C -0.193 4.193 23 C -0.196 4.196 24 C -0.207 4.207 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.929 -17.796 -6.853 19.168 hybrid contribution -0.575 0.721 0.954 1.327 sum -2.504 -17.075 -5.900 18.238 Atomic orbital electron populations 1.22943 0.80763 1.03021 1.00253 1.87988 1.19634 1.25174 1.94434 1.21398 0.95596 0.86825 0.91917 0.88938 1.20726 0.80128 0.82364 0.87452 1.90670 1.60321 1.40536 1.49367 1.48175 1.51882 1.10604 1.23227 1.22179 1.01499 0.86788 0.91897 1.21998 0.98930 0.96642 0.98274 1.21003 0.99193 0.94208 0.94679 1.19619 0.95829 0.93421 0.95815 1.21128 1.42170 0.90993 1.01148 0.90835 1.25020 0.95304 0.95873 0.97240 1.69907 1.48236 0.99584 1.36575 0.86823 0.79245 0.77892 0.85569 1.20357 1.21479 1.19098 1.22055 1.01351 0.94892 0.98707 1.21634 0.94118 0.99393 0.85760 1.22620 1.02557 1.03467 0.90636 1.22892 1.00716 0.94027 1.01932 1.22958 0.99306 1.02962 0.95489 0.89246 0.93757 0.93756 0.91114 0.90105 0.92360 0.89092 0.91673 0.96706 0.97022 0.92780 0.92125 0.91077 0.89652 0.91623 0.86089 0.88872 0.87508 0.88859 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.73 101.05 1.08 1.33 16 2 O -0.36 -4.52 8.24 -55.09 -0.45 -4.98 16 3 C 0.10 1.27 2.17 -27.88 -0.06 1.20 16 4 H 0.09 0.99 6.89 -51.93 -0.36 0.63 16 5 C 0.51 7.75 7.11 -10.99 -0.08 7.67 16 6 O -0.53 -10.09 15.92 -14.30 -0.23 -10.32 16 7 N -0.60 -8.61 2.97 -172.52 -0.51 -9.12 16 8 C 0.10 1.27 4.95 -3.48 -0.02 1.26 16 9 C -0.12 -1.96 5.21 -26.39 -0.14 -2.09 16 10 C -0.07 -1.30 2.10 -90.58 -0.19 -1.49 16 11 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 12 C -0.52 -13.85 8.94 -34.44 -0.31 -14.15 16 13 H 0.07 2.09 7.30 -52.49 -0.38 1.71 16 14 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 15 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 16 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.25 6.54 56.52 0.37 -5.89 16 20 C -0.13 -2.07 5.36 -26.63 -0.14 -2.21 16 21 C 0.11 1.63 6.43 -3.73 -0.02 1.61 16 22 C -0.17 -1.81 4.56 -90.62 -0.41 -2.22 16 23 C -0.16 -1.54 9.87 -26.73 -0.26 -1.80 16 24 C -0.17 -1.44 10.19 -26.73 -0.27 -1.71 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.88 5.00 -51.93 -0.26 0.62 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.63 6.91 -51.93 -0.36 1.27 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 34 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.29 7.01 -51.92 -0.36 0.93 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.12 1.23 6.51 -51.93 -0.34 0.90 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.11 1.14 7.06 -51.93 -0.37 0.77 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -32.13 343.31 -8.37 -40.50 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.43 Total: -0.46 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -1.02 Total: -11.14 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.26 Total: -35.42 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.68 Total: -15.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.13 -8.37 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575184438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.816 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds