Wall clock time and date at job start Tue Mar 31 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99965 * 2 1 4 4 H 1.09004 * 109.46754 * 337.85939 * 3 2 1 5 5 C 1.50695 * 109.47065 * 217.85895 * 3 2 1 6 6 O 1.21278 * 120.00100 * 350.12213 * 5 3 2 7 7 N 1.34777 * 119.99653 * 170.12656 * 5 3 2 8 8 C 1.46920 * 120.63278 * 4.76182 * 7 5 3 9 9 C 1.53628 * 108.54346 * 126.36721 * 8 7 5 10 10 C 1.53043 * 109.24063 * 54.85648 * 9 8 7 11 11 C 1.52999 * 109.45929 * 178.48757 * 10 9 8 12 12 C 1.50697 * 109.47292 * 295.07000 * 11 10 9 13 13 H 1.08000 * 120.00085 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99909 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00329 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99786 * 179.97438 * 14 12 11 17 17 H 1.48511 * 109.47339 * 89.99631 * 16 14 12 18 18 H 1.48505 * 109.47146 * 209.99244 * 16 14 12 19 19 H 1.48500 * 109.47534 * 329.99921 * 16 14 12 20 20 C 1.53032 * 109.53801 * 298.51158 * 10 9 8 21 21 C 1.46933 * 120.62774 * 185.03779 * 7 5 3 22 22 C 1.53004 * 109.47061 * 97.85374 * 3 2 1 23 23 C 1.52995 * 117.50012 * 56.49799 * 22 3 2 24 24 C 1.53001 * 60.03352 * 252.49701 * 23 22 3 25 25 H 1.08995 * 109.47212 * 295.64373 * 1 2 3 26 26 H 1.09001 * 109.46594 * 55.64504 * 1 2 3 27 27 H 1.08998 * 109.46842 * 175.63905 * 1 2 3 28 28 H 1.08997 * 109.58633 * 246.19768 * 8 7 5 29 29 H 1.08997 * 109.59139 * 6.62924 * 8 7 5 30 30 H 1.08991 * 109.63800 * 294.86462 * 9 8 7 31 31 H 1.09000 * 109.42958 * 174.72109 * 9 8 7 32 32 H 1.09000 * 109.44847 * 58.52552 * 10 9 8 33 33 H 1.08999 * 109.47233 * 55.07298 * 11 10 9 34 34 H 1.09000 * 109.46847 * 175.06928 * 11 10 9 35 35 H 0.96999 * 120.00242 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.49637 * 301.41252 * 20 10 9 37 37 H 1.08999 * 109.52695 * 181.33427 * 20 10 9 38 38 H 1.09000 * 109.58531 * 353.37826 * 21 7 5 39 39 H 1.09001 * 109.58165 * 113.65679 * 21 7 5 40 40 H 1.08998 * 115.54794 * 202.16468 * 22 3 2 41 41 H 1.09003 * 117.49569 * 0.02562 * 23 22 3 42 42 H 1.08997 * 117.50192 * 144.98846 * 23 22 3 43 43 H 1.09000 * 117.49761 * 107.49638 * 24 23 22 44 44 H 1.08998 * 117.49842 * 252.52423 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2884 2.0246 -0.3873 5 6 3.2393 1.3081 -0.8720 6 8 3.6869 0.2623 -1.2923 7 7 3.8412 2.4728 -1.1846 8 6 3.3744 3.7373 -0.6000 9 6 4.5707 4.4433 0.0562 10 6 5.6897 4.6035 -0.9756 11 6 6.8694 5.3398 -0.3377 12 6 6.4516 6.7426 0.0207 13 1 5.4453 7.0759 -0.1861 14 6 7.3543 7.6010 0.6118 15 7 8.5798 7.1955 0.8632 16 14 6.8366 9.3401 1.0554 17 1 6.2931 9.3576 2.4374 18 1 8.0131 10.2427 0.9749 19 1 5.7918 9.8029 0.1070 20 6 6.1476 3.2234 -1.4524 21 6 4.9728 2.5028 -2.1213 22 6 2.3978 1.6912 1.4290 23 6 3.3447 0.7543 2.1815 24 6 1.8653 0.8164 2.5667 25 1 -0.3633 0.4447 0.9264 26 1 -0.3632 0.5800 -0.8484 27 1 -0.3633 -1.0247 -0.0781 28 1 2.9578 4.3703 -1.3835 29 1 2.6118 3.5329 0.1516 30 1 4.9319 3.8486 0.8951 31 1 4.2611 5.4257 0.4126 32 1 5.3202 5.1773 -1.8255 33 1 7.1826 4.8125 0.5634 34 1 7.6991 5.3770 -1.0437 35 1 9.2147 7.7993 1.2794 36 1 6.4939 2.6401 -0.5992 37 1 6.9606 3.3369 -2.1695 38 1 5.2652 1.4836 -2.3739 39 1 4.6831 3.0350 -3.0274 40 1 2.4924 2.7605 1.6180 41 1 3.6920 -0.1367 1.6584 42 1 4.0624 1.2072 2.8655 43 1 1.2389 -0.0339 2.2971 44 1 1.6096 1.3106 3.5040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575184439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:50 Heat of formation + Delta-G solvation = -63.556208 kcal Electronic energy + Delta-G solvation = -23194.180491 eV Core-core repulsion = 19919.183188 eV Total energy + Delta-G solvation = -3274.997303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50784 -38.49914 -37.07275 -35.98086 -34.00370 -32.21706 -31.00560 -29.10402 -27.86220 -26.29880 -24.57922 -22.85455 -22.49850 -22.01175 -20.97140 -19.94867 -18.63884 -17.31471 -16.85356 -16.45860 -16.26490 -15.49221 -15.00651 -14.61935 -14.51036 -14.42016 -13.72452 -13.66629 -13.23948 -12.99389 -12.86185 -12.74437 -12.26525 -11.92877 -11.72233 -11.55465 -11.45790 -11.20848 -11.00729 -10.86373 -10.71978 -10.66477 -10.53232 -10.37574 -10.12781 -9.98911 -9.69723 -9.31837 -9.23564 -8.98463 -8.38237 -8.33267 -6.02006 -4.04258 2.67692 2.85034 3.28472 3.35771 3.37678 3.60269 3.82488 4.42854 4.44617 4.59837 4.72498 4.88752 5.03628 5.12673 5.14207 5.20765 5.23762 5.32822 5.40089 5.43605 5.47609 5.52354 5.61291 5.65882 5.73273 5.84836 5.97685 6.02814 6.07689 6.16565 6.36647 6.37681 6.50828 6.64703 6.86829 6.95817 6.98274 7.09129 7.56399 7.65065 7.79813 7.97793 8.30731 8.39809 9.02341 9.59641 11.09228 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023810 B = 0.004138 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.705678 B = 6765.238582 C = 7270.805761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.104 3.896 4 H 0.088 0.912 5 C 0.519 3.481 6 O -0.531 6.531 7 N -0.601 5.601 8 C 0.095 3.905 9 C -0.117 4.117 10 C -0.080 4.080 11 C 0.028 3.972 12 C -0.517 4.517 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.129 4.129 21 C 0.113 3.887 22 C -0.188 4.188 23 C -0.161 4.161 24 C -0.166 4.166 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.015 0.985 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 -10.398 -0.443 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.273 6.273 3 C 0.043 3.957 4 H 0.106 0.894 5 C 0.305 3.695 6 O -0.408 6.408 7 N -0.336 5.336 8 C -0.027 4.027 9 C -0.155 4.155 10 C -0.099 4.099 11 C -0.009 4.009 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.167 4.167 21 C -0.008 4.008 22 C -0.206 4.206 23 C -0.198 4.198 24 C -0.203 4.203 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.142 0.858 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.329 -11.083 -0.607 18.925 hybrid contribution -0.344 1.466 0.344 1.545 sum -15.672 -9.617 -0.262 18.389 Atomic orbital electron populations 1.22935 0.80845 1.03036 1.00214 1.88016 1.19464 1.25236 1.94596 1.21396 0.94260 0.86404 0.93661 0.89425 1.20273 0.84906 0.83651 0.80654 1.90672 1.64970 1.31120 1.53999 1.48057 1.33220 1.06655 1.45680 1.22224 0.98166 0.84591 0.97767 1.21960 0.94378 1.00653 0.98526 1.21183 0.97499 0.93799 0.97404 1.19121 0.91900 0.94333 0.95591 1.21231 0.97500 0.97316 1.39452 0.92622 1.25019 0.94980 0.98431 0.95999 1.69960 1.04268 1.35977 1.43208 0.86658 0.78102 0.84836 0.78761 1.20745 1.21297 1.19915 1.22014 0.96539 0.97516 1.00607 1.21670 0.86122 1.01933 0.91118 1.22864 1.07900 0.98390 0.91487 1.22902 0.92803 1.01464 1.02648 1.22953 0.97736 1.02042 0.97551 0.93556 0.93891 0.89302 0.91524 0.90177 0.92098 0.89767 0.92373 0.96628 0.96593 0.93032 0.92007 0.91148 0.89691 0.91794 0.85843 0.88240 0.88495 0.88108 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.22 101.05 1.03 1.26 16 2 O -0.36 -4.58 8.58 -54.95 -0.47 -5.05 16 3 C 0.10 1.28 2.15 -27.88 -0.06 1.23 16 4 H 0.09 0.88 7.15 -51.93 -0.37 0.51 16 5 C 0.52 8.10 6.81 -10.99 -0.07 8.02 16 6 O -0.53 -10.25 15.95 -14.16 -0.23 -10.48 16 7 N -0.60 -8.85 2.97 -172.51 -0.51 -9.36 16 8 C 0.09 1.25 6.00 -3.49 -0.02 1.22 16 9 C -0.12 -1.94 5.21 -26.38 -0.14 -2.08 16 10 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 11 C 0.03 0.67 4.45 -27.89 -0.12 0.55 16 12 C -0.52 -13.77 8.39 -34.44 -0.29 -14.06 16 13 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 16 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.13 -2.17 5.36 -26.62 -0.14 -2.31 16 21 C 0.11 1.72 6.44 -3.71 -0.02 1.69 16 22 C -0.19 -2.13 4.94 -90.58 -0.45 -2.57 16 23 C -0.16 -1.98 9.85 -26.73 -0.26 -2.24 16 24 C -0.17 -1.67 9.59 -26.69 -0.26 -1.93 16 25 H 0.05 0.33 7.40 -51.93 -0.38 -0.06 16 26 H 0.04 0.32 8.01 -51.93 -0.42 -0.09 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.87 3.89 -51.93 -0.20 0.67 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.47 6.91 -51.93 -0.36 1.11 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.34 7.00 -51.93 -0.36 0.98 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.12 1.30 6.31 -51.93 -0.33 0.97 16 41 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.10 1.01 6.17 -51.93 -0.32 0.69 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 344.48 15.07 5.19 5.19 Total: -1.00 -31.93 344.48 -8.72 -40.65 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.32 Total: 0.17 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.09 Total: -11.46 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.22 Total: -34.98 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.70 Total: -15.53 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.93 -8.72 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575184439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.907 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds