Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.20764 * 119.99831 * 2 1 4 4 C 1.50702 * 120.00472 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47531 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47098 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46931 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 C 1.50701 * 109.47085 * 295.13082 * 13 12 11 15 15 H 1.07998 * 120.00293 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99472 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99503 * 180.02562 * 16 14 13 18 18 Si 1.86791 * 120.00349 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47408 * 90.00025 * 18 16 14 20 20 H 1.48502 * 109.47396 * 210.00023 * 18 16 14 21 21 H 1.48495 * 109.47355 * 329.99898 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 23 23 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 24 24 H 1.09000 * 109.47058 * 269.99763 * 1 2 3 25 25 H 1.08999 * 109.47283 * 29.99389 * 1 2 3 26 26 H 1.09004 * 109.47509 * 149.99809 * 1 2 3 27 27 H 1.09005 * 109.46790 * 59.99011 * 4 2 1 28 28 H 1.09001 * 109.46888 * 299.99837 * 4 2 1 29 29 H 1.08996 * 109.46993 * 60.00050 * 5 4 2 30 30 H 1.09001 * 109.47240 * 300.00036 * 5 4 2 31 31 H 1.09001 * 109.46646 * 60.00027 * 6 5 4 32 32 H 1.09001 * 109.47188 * 300.00170 * 6 5 4 33 33 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 34 34 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 35 35 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 36 36 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 37 37 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 38 38 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 39 39 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 40 40 H 0.97004 * 120.00347 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.50232 * 301.42239 * 22 12 11 42 42 H 1.09007 * 109.52628 * 181.33900 * 22 12 11 43 43 H 1.08994 * 109.58580 * 353.38021 * 23 9 7 44 44 H 1.09006 * 109.57831 * 113.65514 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0255 -0.0011 6 6 4.5298 -2.3505 -0.0011 7 6 6.0114 -2.0751 -0.0009 8 8 6.4156 -0.9316 -0.0004 9 7 6.8873 -3.0994 -0.0014 10 6 8.3346 -2.8469 -0.0018 11 6 8.9713 -3.6079 1.1653 12 6 8.5888 -5.0897 1.0680 13 6 9.2487 -5.8617 2.2124 14 6 10.7461 -5.8213 2.0477 15 1 11.1834 -5.2979 1.2104 16 6 11.5578 -6.4528 2.9661 17 7 12.8646 -6.4171 2.8226 18 14 10.8015 -7.3587 4.4139 19 1 10.5495 -8.7726 4.0363 20 1 11.7346 -7.3136 5.5683 21 1 9.5192 -6.7103 4.7885 22 6 7.0684 -5.2351 1.1650 23 6 6.4127 -4.4900 -0.0026 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8900 -0.5139 27 1 1.9971 -1.8763 -0.8908 28 1 1.9972 -1.8770 0.8892 29 1 4.0284 -0.4541 0.8889 30 1 4.0278 -0.4537 -0.8911 31 1 4.2661 -2.9222 -0.8909 32 1 4.2667 -2.9219 0.8891 33 1 8.7655 -3.1921 -0.9417 34 1 8.5192 -1.7790 0.1142 35 1 10.0554 -3.5048 1.1188 36 1 8.6067 -3.1997 2.1079 37 1 8.9318 -5.4907 0.1142 38 1 8.9753 -5.4051 3.1637 39 1 8.9090 -6.8972 2.1955 40 1 13.4358 -6.8616 3.4685 41 1 6.7218 -4.8118 2.1076 42 1 6.7997 -6.2906 1.1196 43 1 5.3293 -4.5065 0.1154 44 1 6.6851 -4.9681 -0.9436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576229641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = -104.591569 kcal Electronic energy + Delta-G solvation = -21896.960185 eV Core-core repulsion = 18620.183456 eV Total energy + Delta-G solvation = -3276.776729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18494 -39.64524 -37.48041 -34.53349 -34.07471 -32.15028 -31.29865 -30.69715 -28.94814 -27.79866 -24.70499 -23.34435 -22.32336 -21.32857 -19.91524 -19.68427 -18.63188 -17.10337 -16.64826 -16.38998 -16.19825 -15.45313 -15.37646 -15.09584 -14.37436 -14.22392 -13.99106 -13.48123 -13.36005 -13.06973 -13.00662 -12.85672 -12.53541 -12.39913 -12.29291 -12.07426 -11.94989 -11.58352 -11.49065 -11.16102 -10.99981 -10.87276 -10.66757 -10.38250 -10.00488 -9.82090 -9.76277 -9.62539 -9.47201 -9.07563 -8.54754 -8.40390 -6.05249 -4.02804 1.65916 2.72826 3.10182 3.28472 3.36739 3.39603 3.72277 4.39571 4.43751 4.62047 4.68657 4.79972 4.86853 4.95752 4.98310 5.14773 5.21383 5.24773 5.26524 5.29953 5.35695 5.38213 5.53084 5.60814 5.67119 5.76122 5.87640 5.90524 6.02717 6.14402 6.22441 6.30317 6.42008 6.56603 6.81884 6.85692 7.00685 7.21251 7.21451 7.41303 7.56244 7.78491 8.29355 8.52625 8.99614 9.57506 11.08044 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034238 B = 0.002849 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.602385 B = 9824.215309 C =10154.606856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.454 6.454 4 C -0.173 4.173 5 C -0.097 4.097 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.546 6.546 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.118 4.118 12 C -0.072 4.072 13 C -0.009 4.009 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.133 4.133 23 C 0.107 3.893 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.798 5.128 -6.649 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.225 3.775 3 O -0.327 6.327 4 C -0.211 4.211 5 C -0.135 4.135 6 C -0.179 4.179 7 C 0.298 3.702 8 O -0.424 6.424 9 N -0.341 5.341 10 C -0.014 4.014 11 C -0.156 4.156 12 C -0.091 4.091 13 C -0.046 4.046 14 C -0.554 4.554 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.543 5.543 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.172 4.172 23 C -0.015 4.015 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.082 6.239 -6.571 25.730 hybrid contribution -0.283 -0.917 0.876 1.300 sum -24.365 5.322 -5.694 25.582 Atomic orbital electron populations 1.22306 0.94620 1.04695 1.04628 1.24655 0.91879 0.90465 0.70484 1.90458 1.71940 1.35204 1.35088 1.22191 0.96684 0.97517 1.04691 1.21161 0.91484 0.96071 1.04825 1.21700 0.92275 0.99792 1.04158 1.20617 0.88613 0.84822 0.76132 1.90695 1.80214 1.21191 1.50312 1.48217 1.07141 1.06191 1.72598 1.21761 0.78540 1.01665 0.99418 1.21949 1.01915 0.95091 0.96688 1.21059 0.91874 0.95286 1.00892 1.19615 0.96722 0.94582 0.93699 1.21137 0.89104 1.33898 1.11276 0.90845 1.25041 0.94718 0.96060 0.97787 1.69915 1.03160 1.44438 1.36761 0.86797 0.79463 0.80421 0.82674 1.20405 1.21489 1.19110 1.22074 0.97792 0.99809 0.97488 1.21816 0.98692 0.81341 0.99699 0.88727 0.89838 0.89696 0.88317 0.88251 0.90615 0.90665 0.89005 0.88867 0.91812 0.89605 0.89273 0.92480 0.91746 0.96720 0.97086 0.92792 0.92000 0.91054 0.90394 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.90 10.25 36.00 0.37 -0.53 16 2 C 0.35 2.77 7.27 -29.04 -0.21 2.56 16 3 O -0.45 -5.81 16.72 6.00 0.10 -5.71 16 4 C -0.17 -1.06 5.62 -27.88 -0.16 -1.22 16 5 C -0.10 -0.98 3.79 -26.73 -0.10 -1.08 16 6 C -0.14 -1.29 4.05 -27.88 -0.11 -1.41 16 7 C 0.51 7.25 7.70 -10.99 -0.08 7.16 16 8 O -0.55 -9.99 15.39 5.56 0.09 -9.91 16 9 N -0.61 -8.49 2.97 -172.74 -0.51 -9.00 16 10 C 0.11 1.70 6.42 -3.71 -0.02 1.68 16 11 C -0.12 -2.13 5.21 -26.45 -0.14 -2.27 16 12 C -0.07 -1.32 2.10 -90.42 -0.19 -1.51 16 13 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 14 C -0.52 -14.14 8.94 -34.44 -0.31 -14.45 16 15 H 0.07 2.15 7.30 -52.49 -0.38 1.77 16 16 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 18 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 22 C -0.13 -1.87 5.37 -26.59 -0.14 -2.01 16 23 C 0.11 1.22 6.34 -3.68 -0.02 1.19 16 24 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.19 8.12 -51.93 -0.42 -0.24 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 30 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 31 H 0.09 0.64 7.94 -51.93 -0.41 0.22 16 32 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 35 H 0.09 1.79 6.93 -51.93 -0.36 1.43 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 39 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -34.69 350.86 -7.90 -42.59 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.65 Total: -2.84 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.32 Total: -10.42 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.26 Total: -35.78 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.19 Total: -15.62 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.69 -7.90 -42.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576229641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.005 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds