Wall clock time and date at job start Tue Mar 31 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46900 * 2 1 4 4 C 1.42905 * 113.99615 * 180.02562 * 3 2 1 5 5 C 1.53781 * 113.61093 * 247.49599 * 4 3 2 6 6 C 1.53777 * 87.07977 * 220.01856 * 5 4 3 7 7 C 1.50705 * 113.61417 * 139.98264 * 6 5 4 8 8 O 1.21278 * 119.99864 * 262.50615 * 7 6 5 9 9 N 1.34778 * 120.00285 * 82.50257 * 7 6 5 10 10 C 1.46932 * 120.62571 * 359.72328 * 9 7 6 11 11 C 1.53617 * 108.54217 * 126.36761 * 10 9 7 12 12 C 1.53042 * 109.24204 * 54.85658 * 11 10 9 13 13 C 1.50705 * 109.44927 * 178.49917 * 12 11 10 14 14 H 1.07993 * 120.00210 * 120.05857 * 13 12 11 15 15 C 1.37877 * 119.99515 * 300.05550 * 13 12 11 16 16 N 1.31510 * 120.00486 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99595 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47181 * 90.00270 * 17 15 13 19 19 H 1.48507 * 109.47079 * 210.00240 * 17 15 13 20 20 H 1.48498 * 109.47482 * 329.99912 * 17 15 13 21 21 C 1.53040 * 109.53590 * 298.50812 * 12 11 10 22 22 C 1.46923 * 120.63331 * 180.02562 * 9 7 6 23 23 C 1.53780 * 87.08217 * 25.43602 * 6 5 4 24 24 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47353 * 300.00157 * 1 2 3 26 26 H 1.09009 * 109.47187 * 60.00209 * 1 2 3 27 27 H 1.09007 * 109.47201 * 239.99839 * 2 1 3 28 28 H 1.09001 * 109.46794 * 120.00320 * 2 1 3 29 29 H 1.08993 * 112.85007 * 18.80154 * 4 3 2 30 30 H 1.08993 * 113.61733 * 334.56970 * 5 4 3 31 31 H 1.09001 * 113.61258 * 105.47714 * 5 4 3 32 32 H 1.09001 * 113.69684 * 270.87006 * 6 5 4 33 33 H 1.09002 * 109.58521 * 246.20230 * 10 9 7 34 34 H 1.08998 * 109.58461 * 6.62252 * 10 9 7 35 35 H 1.09001 * 109.63971 * 294.86422 * 11 10 9 36 36 H 1.09005 * 109.43265 * 174.72238 * 11 10 9 37 37 H 1.08993 * 109.46395 * 58.52949 * 12 11 10 38 38 H 0.97002 * 120.00416 * 179.97438 * 16 15 13 39 39 H 1.09006 * 109.50182 * 301.41432 * 21 12 11 40 40 H 1.08996 * 109.49883 * 181.31783 * 21 12 11 41 41 H 1.09000 * 109.58550 * 353.37430 * 22 9 7 42 42 H 1.08998 * 109.58245 * 113.65497 * 22 9 7 43 43 H 1.09000 * 113.61269 * 220.01900 * 23 6 5 44 44 H 1.08997 * 113.69385 * 89.12846 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 4.0028 2.0461 1.3010 6 6 4.9899 2.8312 0.4212 7 6 5.2278 4.2428 0.8926 8 8 4.6196 5.1618 0.3863 9 7 6.1165 4.4839 1.8768 10 6 6.8565 3.3803 2.5040 11 6 8.3583 3.6945 2.4294 12 6 8.6190 5.0642 3.0604 13 6 10.0960 5.3611 3.0229 14 1 10.4589 6.2300 2.4942 15 6 10.9840 4.5233 3.6637 16 7 10.5421 3.4649 4.3072 17 14 12.8147 4.8916 3.6179 18 1 13.1758 5.7511 4.7738 19 1 13.5776 3.6195 3.6895 20 1 13.1463 5.5970 2.3539 21 6 7.8627 6.1403 2.2780 22 6 6.3589 5.8544 2.3474 23 6 3.9483 2.7253 -0.7051 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9277 0.5457 -0.3246 30 1 3.2993 2.6801 1.8406 31 1 4.4822 1.3046 1.9401 32 1 5.9147 2.2931 0.2129 33 1 6.5522 3.2820 3.5461 34 1 6.6490 2.4521 1.9716 35 1 8.6787 3.7070 1.3876 36 1 8.9159 2.9316 2.9729 37 1 8.2758 5.0587 4.0949 38 1 11.1669 2.8752 4.7577 39 1 8.1877 6.1298 1.2376 40 1 8.0674 7.1183 2.7136 41 1 5.8230 6.5592 1.7116 42 1 6.0126 5.9541 3.3761 43 1 4.3835 2.5320 -1.6855 44 1 3.2293 3.5445 -0.7153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580609315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:26 Heat of formation + Delta-G solvation = -75.526946 kcal Electronic energy + Delta-G solvation = -22588.594363 eV Core-core repulsion = 19313.077971 eV Total energy + Delta-G solvation = -3275.516393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40095 -38.66392 -36.90728 -35.92111 -33.49662 -31.42714 -31.03839 -30.06317 -26.78574 -25.76398 -25.37004 -23.09036 -22.81438 -22.24018 -20.56748 -19.26571 -18.41110 -17.41182 -16.53928 -16.07534 -15.84849 -15.70059 -15.23558 -14.58280 -14.40853 -13.96145 -13.35495 -13.14190 -13.07832 -12.87274 -12.72135 -12.62320 -12.42118 -12.23271 -11.75685 -11.63930 -11.51525 -11.30041 -11.09083 -10.96049 -10.91096 -10.68881 -10.63706 -10.38815 -10.10894 -9.66955 -9.57278 -9.29601 -9.17908 -8.92877 -8.39829 -7.98189 -6.05287 -4.11300 2.97536 3.26600 3.33664 3.36263 3.37480 3.69928 4.39043 4.41782 4.51691 4.70122 4.73318 4.85513 4.95264 5.04557 5.13352 5.23597 5.27947 5.43157 5.62162 5.65905 5.67226 5.74359 5.81727 5.85369 5.92076 5.95654 6.01384 6.10491 6.16028 6.24323 6.27606 6.46177 6.65757 6.89770 7.03215 7.13628 7.15326 7.26661 7.64668 7.90094 7.95633 8.02156 8.38322 8.60237 8.92169 9.53863 11.00161 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.003388 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.734046 B = 8261.800916 C = 8779.694476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.063 3.937 5 C -0.135 4.135 6 C -0.135 4.135 7 C 0.523 3.477 8 O -0.558 6.558 9 N -0.598 5.598 10 C 0.104 3.896 11 C -0.124 4.124 12 C 0.048 3.952 13 C -0.511 4.511 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.123 4.123 22 C 0.111 3.889 23 C -0.112 4.112 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.104 0.896 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.113 -8.257 -6.270 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.292 6.292 4 C 0.005 3.995 5 C -0.174 4.174 6 C -0.157 4.157 7 C 0.311 3.689 8 O -0.437 6.437 9 N -0.329 5.329 10 C -0.018 4.018 11 C -0.163 4.163 12 C 0.030 3.970 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.161 4.161 22 C -0.011 4.011 23 C -0.150 4.150 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.122 0.878 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.473 -7.763 -6.413 17.631 hybrid contribution 1.437 -0.191 0.145 1.457 sum -13.035 -7.954 -6.268 16.507 Atomic orbital electron populations 1.21750 0.93939 1.02078 1.03163 1.22507 0.95547 0.84231 0.99942 1.87988 1.20672 1.25996 1.94552 1.23679 0.81015 0.98070 0.96729 1.23413 0.97536 0.99335 0.97073 1.22453 0.99318 0.94771 0.99121 1.20196 0.79009 0.90346 0.79351 1.90626 1.49622 1.45978 1.57503 1.48228 1.39775 1.08914 1.36033 1.22132 0.94922 0.87770 0.96996 1.22102 0.90643 1.03128 1.00379 1.18636 0.94440 0.89625 0.94327 1.21213 0.91423 1.09681 1.32629 0.92706 1.24957 0.98746 0.95120 0.95154 1.69832 1.34386 1.14328 1.34584 0.86618 0.85432 0.77664 0.78430 1.20709 1.21255 1.19990 1.22009 0.92398 1.00615 1.01077 1.21698 0.98151 0.82504 0.98763 1.23102 0.97119 0.97809 0.96978 0.91268 0.91836 0.91896 0.93471 0.93381 0.89270 0.88858 0.90395 0.86680 0.91989 0.91430 0.94244 0.87808 0.95471 0.92991 0.92974 0.92184 0.90416 0.92307 0.90671 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.48 6.50 37.16 0.24 0.72 16 3 O -0.37 -4.46 10.35 -35.23 -0.36 -4.82 16 4 C 0.06 0.69 4.31 -25.92 -0.11 0.58 16 5 C -0.14 -1.61 7.30 -25.92 -0.19 -1.80 16 6 C -0.14 -1.83 2.74 -90.96 -0.25 -2.08 16 7 C 0.52 9.21 7.22 -10.98 -0.08 9.13 16 8 O -0.56 -11.46 15.31 5.56 0.09 -11.37 16 9 N -0.60 -10.79 2.97 -172.48 -0.51 -11.30 16 10 C 0.10 1.82 6.37 -3.49 -0.02 1.80 16 11 C -0.12 -2.69 5.17 -26.39 -0.14 -2.82 16 12 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 13 C -0.51 -13.55 8.56 -34.44 -0.29 -13.84 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -24.19 11.30 55.43 0.63 -23.57 16 17 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.12 -2.53 5.30 -26.59 -0.14 -2.67 16 22 C 0.11 2.07 6.43 -3.69 -0.02 2.04 16 23 C -0.11 -1.42 7.23 -25.92 -0.19 -1.60 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 30 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.12 1.40 7.22 -51.93 -0.37 1.03 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.00 5.68 -51.93 -0.30 0.70 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 2.50 6.03 -51.93 -0.31 2.18 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.45 7.01 -51.93 -0.36 1.09 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.54 7.44 -51.93 -0.39 1.15 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -29.53 346.81 -8.65 -38.19 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.60 Total: 0.76 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.10 Total: -8.82 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.12 Total: -34.87 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.28 Total: -16.19 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.53 -8.65 -38.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580609315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.338 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds