Wall clock time and date at job start Tue Mar 31 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47077 * 2 1 4 4 C 1.42901 * 114.00130 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.94635 * 338.09687 * 4 3 2 6 6 C 1.53957 * 113.66237 * 109.50220 * 4 3 2 7 7 C 1.53945 * 87.29527 * 139.20974 * 6 4 3 8 8 H 1.09002 * 113.66835 * 89.73491 * 7 6 4 9 9 N 1.46502 * 113.66027 * 220.70212 * 7 6 4 10 10 C 1.34775 * 119.99774 * 255.48954 * 9 7 6 11 11 O 1.21280 * 119.99770 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00040 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47152 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47152 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00057 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99934 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99704 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99728 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47106 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47128 * 119.99932 * 18 16 14 21 21 H 1.48507 * 109.47007 * 240.00080 * 18 16 14 22 22 C 1.52906 * 113.66266 * 206.68494 * 4 3 2 23 23 C 1.52911 * 121.13708 * 94.91042 * 22 4 3 24 24 C 1.53953 * 86.78498 * 209.37459 * 23 22 4 25 25 C 1.52908 * 121.14322 * 346.34926 * 22 4 3 26 26 H 1.09003 * 109.46776 * 60.00771 * 1 2 3 27 27 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46975 * 300.00546 * 1 2 3 29 29 H 1.08992 * 109.47279 * 239.99729 * 2 1 3 30 30 H 1.09003 * 109.46776 * 119.99229 * 2 1 3 31 31 H 1.09004 * 113.57788 * 253.81104 * 6 4 3 32 32 H 1.08997 * 113.58156 * 24.52558 * 6 4 3 33 33 H 0.96995 * 120.00305 * 75.49593 * 9 7 6 34 34 H 1.08996 * 109.46921 * 300.00226 * 12 10 9 35 35 H 1.09000 * 109.47005 * 60.00368 * 12 10 9 36 36 H 1.09004 * 109.47381 * 299.99990 * 13 12 10 37 37 H 1.09002 * 109.47419 * 59.99730 * 13 12 10 38 38 H 0.97004 * 119.99468 * 180.02562 * 17 16 14 39 39 H 1.09001 * 113.66341 * 323.84544 * 23 22 4 40 40 H 1.08996 * 113.66624 * 94.90194 * 23 22 4 41 41 H 1.09002 * 113.58246 * 270.13531 * 24 23 22 42 42 H 1.08994 * 113.58138 * 139.33426 * 24 23 22 43 43 H 1.09003 * 113.66175 * 265.09643 * 25 22 4 44 44 H 1.09004 * 113.66268 * 36.05302 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9279 0.5654 0.3754 6 6 4.0102 1.9780 -1.3285 7 6 4.9831 2.8264 -0.4896 8 1 5.9164 2.3157 -0.2525 9 7 5.1909 4.1771 -1.0177 10 6 6.3349 4.4798 -1.6628 11 8 7.1920 3.6339 -1.8064 12 6 6.5489 5.8693 -2.2055 13 6 7.9166 5.9455 -2.8870 14 6 8.1310 7.3352 -3.4292 15 1 7.3678 8.0885 -3.3009 16 6 9.3014 7.6449 -4.0890 17 7 10.2304 6.7273 -4.2456 18 14 9.5667 9.3672 -4.7616 19 1 8.3792 10.2056 -4.4578 20 1 10.7702 9.9653 -4.1300 21 1 9.7612 9.2997 -6.2324 22 6 3.9435 2.7561 0.6296 23 6 4.3599 2.8107 2.0999 24 6 3.9358 4.2905 2.0752 25 6 3.0005 3.9273 0.9075 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 4.5031 1.2061 -1.9195 32 1 3.3041 2.5700 -1.9107 33 1 4.5052 4.8535 -0.9030 34 1 5.7687 6.1002 -2.9306 35 1 6.5095 6.5888 -1.3877 36 1 8.6972 5.7143 -2.1621 37 1 7.9557 5.2260 -3.7048 38 1 11.0540 6.9453 -4.7095 39 1 3.7451 2.1903 2.7520 40 1 5.4284 2.6645 2.2578 41 1 4.7403 4.9701 1.7943 42 1 3.4076 4.6077 2.9743 43 1 2.9831 4.6730 0.1127 44 1 2.0032 3.6206 1.2229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583905653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:30 Heat of formation + Delta-G solvation = -56.657545 kcal Electronic energy + Delta-G solvation = -22259.835771 eV Core-core repulsion = 18985.137617 eV Total energy + Delta-G solvation = -3274.698154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.12939 -38.68156 -37.47820 -34.89235 -33.42009 -32.84741 -31.16657 -30.66368 -26.09836 -25.95235 -24.82776 -24.06240 -22.98979 -21.54705 -20.98779 -19.70617 -18.40432 -17.19439 -16.83457 -16.16088 -16.00022 -15.68615 -15.44334 -14.75547 -14.70172 -14.40833 -13.79529 -13.42525 -13.10072 -12.95097 -12.73195 -12.48901 -12.31659 -12.22127 -12.09404 -11.81398 -11.69637 -11.43030 -11.23738 -11.12070 -10.93217 -10.62193 -10.50491 -10.48095 -10.36254 -9.93687 -9.64124 -9.43384 -9.14050 -8.96525 -8.69169 -8.30487 -5.94597 -3.98698 3.25123 3.25615 3.33694 3.40753 3.44208 3.77255 4.18184 4.32673 4.42794 4.49241 4.60123 4.69772 4.73284 4.80358 4.90394 5.07005 5.09333 5.27736 5.36054 5.40450 5.41981 5.49284 5.60215 5.63164 5.63571 5.74745 5.79191 5.81205 5.83392 5.89596 6.13874 6.20303 6.25709 6.27979 6.30859 6.80986 6.92548 7.06446 7.76759 7.88724 7.93984 8.09258 8.40911 8.81802 9.10288 9.64758 11.16429 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031249 B = 0.003032 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.801208 B = 9232.102286 C = 9490.605339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.078 3.922 5 H 0.089 0.911 6 C -0.167 4.167 7 C 0.153 3.847 8 H 0.115 0.885 9 N -0.729 5.729 10 C 0.511 3.489 11 O -0.535 6.535 12 C -0.131 4.131 13 C 0.037 3.963 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.103 4.103 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.398 0.602 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.531 -11.645 12.687 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.287 6.287 4 C 0.020 3.980 5 H 0.107 0.893 6 C -0.206 4.206 7 C 0.047 3.953 8 H 0.133 0.867 9 N -0.383 5.383 10 C 0.300 3.700 11 O -0.410 6.410 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.110 4.110 23 C -0.163 4.163 24 C -0.178 4.178 25 C -0.141 4.141 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.233 0.767 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.827 -12.116 12.490 25.637 hybrid contribution 0.033 0.893 -0.394 0.977 sum -18.794 -11.223 12.096 25.010 Atomic orbital electron populations 1.21740 0.93897 1.02111 1.03076 1.22493 0.95472 0.84244 0.99953 1.87927 1.20329 1.25871 1.94568 1.23249 0.81087 0.97133 0.96566 0.89340 1.23968 0.98964 1.00330 0.97340 1.21712 0.96824 0.84715 0.92096 0.86731 1.46118 1.20521 1.12231 1.59396 1.21591 0.80264 0.91734 0.76435 1.90658 1.43120 1.50578 1.56673 1.21869 1.03812 0.90585 1.00782 1.18899 0.88636 0.96764 0.95763 1.21268 1.02305 0.96589 1.36224 0.92566 1.25033 0.96126 0.97083 0.96219 1.70013 1.07429 1.33118 1.42309 0.86537 0.78085 0.84659 0.78689 1.19752 1.21027 1.21033 1.23248 0.97026 0.95850 0.94880 1.22747 1.01438 0.97246 0.94913 1.22859 0.99607 0.96617 0.98677 1.22408 0.97928 0.95731 0.98019 0.91837 0.91281 0.91962 0.93408 0.93557 0.90811 0.88909 0.76696 0.90280 0.90274 0.95839 0.95836 0.93032 0.89939 0.91093 0.89860 0.91468 0.91496 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.44 6.51 37.16 0.24 0.68 16 3 O -0.37 -3.79 9.66 -35.23 -0.34 -4.13 16 4 C 0.08 0.79 4.17 -26.28 -0.11 0.68 16 5 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 6 C -0.17 -1.97 7.71 -25.75 -0.20 -2.16 16 7 C 0.15 1.97 4.08 -67.48 -0.28 1.70 16 8 H 0.11 1.67 7.54 -51.93 -0.39 1.28 16 9 N -0.73 -10.48 5.31 -53.37 -0.28 -10.76 16 10 C 0.51 9.91 7.83 -10.99 -0.09 9.83 16 11 O -0.54 -12.66 15.62 5.56 0.09 -12.57 16 12 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 14 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.11 -1.12 1.07 -154.71 -0.17 -1.29 16 23 C -0.13 -1.19 7.84 -26.28 -0.21 -1.39 16 24 C -0.14 -1.30 8.08 -25.75 -0.21 -1.51 16 25 C -0.10 -0.99 7.08 -26.28 -0.19 -1.17 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.40 4.76 6.68 -40.82 -0.27 4.49 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 44 H 0.09 0.87 7.84 -51.93 -0.41 0.47 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -33.59 358.34 -8.61 -42.20 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.69 Total: 0.96 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.50 Total: -11.00 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.45 Total: -37.68 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.25 Total: -16.70 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.59 -8.61 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583905653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.456 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds