Wall clock time and date at job start Tue Mar 31 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.88115 * 18.65183 * 4 3 2 6 6 C 1.53948 * 113.66032 * 247.18465 * 4 3 2 7 7 C 1.53953 * 87.29149 * 220.79362 * 6 4 3 8 8 H 1.09002 * 113.65983 * 270.25842 * 7 6 4 9 9 N 1.46506 * 113.74195 * 139.22015 * 7 6 4 10 10 C 1.34780 * 119.99997 * 107.77274 * 9 7 6 11 11 O 1.21287 * 119.99625 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00015 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47059 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47295 * 179.97438 * 13 12 10 15 15 H 1.07998 * 119.99597 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00044 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99623 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00063 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.46817 * 90.00373 * 18 16 14 20 20 H 1.48498 * 109.47226 * 209.99914 * 18 16 14 21 21 H 1.48498 * 109.47475 * 330.00330 * 18 16 14 22 22 C 1.52904 * 86.78317 * 24.73395 * 7 6 4 23 23 C 1.52910 * 121.13299 * 100.82079 * 22 7 6 24 24 C 1.53949 * 86.78488 * 100.81624 * 23 22 7 25 25 C 1.52906 * 121.13451 * 209.37568 * 22 7 6 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.08998 * 113.58254 * 335.39365 * 6 4 3 32 32 H 1.08998 * 113.57774 * 106.19005 * 6 4 3 33 33 H 0.96996 * 119.99709 * 287.76669 * 9 7 6 34 34 H 1.08998 * 109.46777 * 299.99240 * 12 10 9 35 35 H 1.08996 * 109.46996 * 59.99609 * 12 10 9 36 36 H 1.09001 * 109.47600 * 300.00034 * 13 12 10 37 37 H 1.09005 * 109.47114 * 59.99962 * 13 12 10 38 38 H 0.97001 * 120.00054 * 180.02562 * 17 16 14 39 39 H 1.09004 * 113.66174 * 215.28918 * 23 22 7 40 40 H 1.08998 * 113.66596 * 346.34373 * 23 22 7 41 41 H 1.08992 * 113.58379 * 270.12997 * 24 23 22 42 42 H 1.09004 * 113.58214 * 139.33285 * 24 23 22 43 43 H 1.09004 * 113.66479 * 13.66038 * 25 22 7 44 44 H 1.09003 * 113.66263 * 144.61588 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9284 0.5451 -0.3221 6 6 4.0042 2.0537 1.2990 7 6 4.9809 2.8526 0.4170 8 1 5.9153 2.3292 0.2142 9 7 5.1864 4.2324 0.8647 10 6 6.3536 4.5885 1.4370 11 8 7.2336 3.7665 1.5817 12 6 6.5651 6.0079 1.8969 13 6 7.9619 6.1437 2.5062 14 6 8.1738 7.5633 2.9656 15 1 7.3906 8.2954 2.8356 16 6 9.3678 7.9275 3.5509 17 7 9.5524 9.1663 3.9523 18 14 10.7227 6.6613 3.7751 19 1 11.5983 6.6556 2.5756 20 1 11.5282 7.0053 4.9743 21 1 10.1188 5.3164 3.9536 22 6 3.9466 2.7177 -0.7009 23 6 3.0050 3.8707 -1.0502 24 6 3.9455 4.1661 -2.2326 25 6 4.3697 2.6875 -2.1700 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2959 2.6793 1.8422 32 1 4.4942 1.3172 1.9358 33 1 4.4824 4.8896 0.7491 34 1 6.4722 6.6830 1.0463 35 1 5.8158 6.2624 2.6465 36 1 8.0546 5.4685 3.3569 37 1 8.7115 5.8890 1.7569 38 1 10.3926 9.4227 4.3637 39 1 2.0096 3.5461 -1.3535 40 1 2.9840 4.6611 -0.2999 41 1 4.7488 4.8609 -1.9878 42 1 3.4215 4.4309 -3.1511 43 1 5.4390 2.5326 -2.3143 44 1 3.7589 2.0290 -2.7877 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583905654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:32 Heat of formation + Delta-G solvation = -53.984079 kcal Electronic energy + Delta-G solvation = -22326.427932 eV Core-core repulsion = 19051.845708 eV Total energy + Delta-G solvation = -3274.582224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18888 -38.81961 -37.51980 -34.97107 -33.45424 -32.93666 -31.31863 -30.89537 -26.46511 -26.02351 -24.87004 -24.08760 -23.02863 -21.35108 -20.95683 -19.76663 -18.48819 -17.25791 -17.11951 -16.23312 -16.11478 -15.87472 -15.51822 -14.87849 -14.81364 -14.07251 -13.85752 -13.49612 -13.16691 -13.04736 -12.79599 -12.57651 -12.52200 -12.44206 -12.18663 -11.91433 -11.74931 -11.49870 -11.38144 -11.27804 -10.94793 -10.63158 -10.54927 -10.40826 -10.13582 -10.02451 -9.76801 -9.46911 -9.21249 -9.13920 -8.79231 -8.49148 -6.01549 -4.00117 3.10909 3.18739 3.38950 3.45421 3.56602 3.69577 4.13155 4.27960 4.37828 4.52300 4.55979 4.65886 4.67799 4.75997 4.85722 5.02655 5.05009 5.22156 5.31803 5.33942 5.34717 5.44846 5.52482 5.56877 5.59854 5.70248 5.75969 5.77027 5.79081 5.83240 6.03690 6.11677 6.13130 6.16237 6.27062 6.69429 6.72389 7.01960 7.38333 7.45580 7.78598 7.83308 8.51888 8.67866 9.01747 9.61580 11.11329 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.003222 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.842343 B = 8688.752242 C = 8954.950207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.078 3.922 5 H 0.089 0.911 6 C -0.165 4.165 7 C 0.151 3.849 8 H 0.116 0.884 9 N -0.726 5.726 10 C 0.512 3.488 11 O -0.541 6.541 12 C -0.123 4.123 13 C 0.002 3.998 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.261 1.261 22 C -0.111 4.111 23 C -0.103 4.103 24 C -0.140 4.140 25 C -0.126 4.126 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.399 0.601 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.325 -17.666 -12.070 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.286 6.286 4 C 0.020 3.980 5 H 0.107 0.893 6 C -0.204 4.204 7 C 0.045 3.955 8 H 0.134 0.866 9 N -0.380 5.380 10 C 0.301 3.699 11 O -0.417 6.417 12 C -0.163 4.163 13 C -0.036 4.036 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.113 4.113 23 C -0.140 4.140 24 C -0.177 4.177 25 C -0.163 4.163 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.235 0.765 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.657 -17.968 -11.863 27.845 hybrid contribution 0.559 -0.530 0.142 0.783 sum -17.098 -18.498 -11.721 27.784 Atomic orbital electron populations 1.21739 0.93857 1.02134 1.03114 1.22503 0.95520 0.84211 0.99928 1.87934 1.20281 1.25895 1.94530 1.23242 0.81153 0.97159 0.96455 0.89313 1.23950 0.98908 1.00228 0.97358 1.21744 0.97004 0.84112 0.92637 0.86577 1.46075 1.17901 1.10803 1.63180 1.21573 0.80679 0.91915 0.75780 1.90643 1.42709 1.53465 1.54923 1.21672 1.02749 0.90146 1.01714 1.19363 0.90473 0.97562 0.96200 1.21122 1.01662 0.93925 1.39514 0.90942 1.24976 0.98381 0.95141 0.94793 1.69914 1.25615 1.17249 1.41510 0.86790 0.82090 0.82922 0.77711 1.20262 1.21471 1.18533 1.23289 0.97076 0.96258 0.94630 1.22404 0.97907 0.96048 0.97676 1.22856 0.99597 0.96675 0.98617 1.22742 1.01386 0.97373 0.94831 0.91926 0.91267 0.91826 0.93544 0.93431 0.88829 0.90796 0.76490 0.89636 0.89607 0.95843 0.96305 0.92739 0.88987 0.91477 0.89860 0.91440 0.91149 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.41 6.50 37.16 0.24 0.66 16 3 O -0.37 -3.63 9.66 -35.23 -0.34 -3.97 16 4 C 0.08 0.75 4.19 -26.29 -0.11 0.64 16 5 H 0.09 0.75 7.87 -51.93 -0.41 0.34 16 6 C -0.17 -1.82 7.72 -25.75 -0.20 -2.02 16 7 C 0.15 1.84 4.12 -67.48 -0.28 1.56 16 8 H 0.12 1.60 7.46 -51.93 -0.39 1.21 16 9 N -0.73 -9.86 5.28 -53.37 -0.28 -10.14 16 10 C 0.51 9.33 7.83 -10.99 -0.09 9.25 16 11 O -0.54 -11.96 15.58 5.55 0.09 -11.88 16 12 C -0.12 -2.40 5.64 -27.89 -0.16 -2.56 16 13 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 14 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 18 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 22 C -0.11 -1.09 1.07 -154.72 -0.17 -1.26 16 23 C -0.10 -0.95 7.10 -26.28 -0.19 -1.13 16 24 C -0.14 -1.27 8.08 -25.75 -0.21 -1.47 16 25 C -0.13 -1.14 7.84 -26.28 -0.21 -1.35 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.40 4.52 6.73 -40.82 -0.27 4.25 16 34 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 37 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.09 0.85 7.84 -51.93 -0.41 0.44 16 40 H 0.07 0.61 6.42 -51.93 -0.33 0.27 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -33.54 354.68 -8.24 -41.78 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.66 Total: 0.00 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.50 Total: -11.82 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.49 Total: -37.57 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.25 Total: -15.85 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.54 -8.24 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583905654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.202 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds