Wall clock time and date at job start Tue Mar 31 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47533 * 2 1 4 4 C 1.42902 * 114.00174 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.88449 * 21.84568 * 4 3 2 6 6 C 1.53952 * 113.66488 * 250.49722 * 4 3 2 7 7 C 1.53955 * 87.29427 * 220.79656 * 6 4 3 8 8 H 1.08991 * 113.66438 * 139.30140 * 7 6 4 9 9 N 1.46499 * 113.65676 * 270.26312 * 7 6 4 10 10 C 1.34784 * 119.99893 * 255.49407 * 9 7 6 11 11 O 1.21283 * 119.99649 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72962 * 10 9 7 13 13 C 1.53003 * 109.46624 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46956 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99792 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00025 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00107 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99859 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46826 * 60.00434 * 18 16 14 20 20 H 1.48507 * 109.47116 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47422 * 300.00242 * 18 16 14 22 22 C 1.52906 * 86.78171 * 24.73292 * 7 6 4 23 23 C 1.52913 * 121.13858 * 209.38002 * 22 7 6 24 24 C 1.53955 * 86.78283 * 209.38119 * 23 22 7 25 25 C 1.52912 * 121.13914 * 100.82004 * 22 7 6 26 26 H 1.09005 * 109.46895 * 59.99616 * 1 2 3 27 27 H 1.08998 * 109.47541 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46761 * 300.00376 * 1 2 3 29 29 H 1.08997 * 109.47270 * 239.99605 * 2 1 3 30 30 H 1.09005 * 109.46895 * 120.00384 * 2 1 3 31 31 H 1.08997 * 113.57823 * 106.18759 * 6 4 3 32 32 H 1.09001 * 113.57899 * 335.39371 * 6 4 3 33 33 H 0.97005 * 120.00261 * 75.49618 * 9 7 6 34 34 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 35 35 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 36 36 H 1.09001 * 109.46782 * 299.99104 * 13 12 10 37 37 H 1.08993 * 109.47555 * 59.99547 * 13 12 10 38 38 H 0.97000 * 119.99849 * 179.97438 * 17 16 14 39 39 H 1.08995 * 113.66578 * 323.85187 * 23 22 7 40 40 H 1.09002 * 113.66302 * 94.90976 * 23 22 7 41 41 H 1.09008 * 113.58018 * 270.13298 * 24 23 22 42 42 H 1.08992 * 113.57954 * 139.34343 * 24 23 22 43 43 H 1.08997 * 113.66355 * 265.09722 * 25 22 7 44 44 H 1.09005 * 113.66042 * 36.05611 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9272 0.5642 -0.3727 6 6 4.0092 1.9782 1.3299 7 6 4.9828 2.8265 0.4915 8 1 5.1372 3.8314 0.8842 9 7 6.2374 2.1398 0.1742 10 6 7.3688 2.4662 0.8299 11 8 7.3481 3.3280 1.6830 12 6 8.6581 1.7555 0.5077 13 6 9.7800 2.3107 1.3876 14 6 11.0692 1.5997 1.0659 15 1 11.0865 0.8286 0.3098 16 6 12.2265 1.9335 1.7368 17 7 12.2055 2.8728 2.6571 18 14 13.8244 1.0516 1.3385 19 1 14.1643 1.2648 -0.0913 20 1 14.9136 1.5914 2.1915 21 1 13.6657 -0.4019 1.5982 22 6 3.9442 2.7557 -0.6285 23 6 4.3616 2.8098 -2.0985 24 6 2.9922 3.4572 -2.3737 25 6 3.0013 3.9267 -0.9076 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 4.5015 1.2064 1.9216 32 1 3.3031 2.5716 1.9107 33 1 6.2538 1.4502 -0.5079 34 1 8.5421 0.6885 0.6978 35 1 8.9072 1.9127 -0.5416 36 1 9.8961 3.3778 1.1979 37 1 9.5306 2.1532 2.4369 38 1 13.0197 3.1073 3.1293 39 1 5.2053 3.4728 -2.2897 40 1 4.4809 1.8275 -2.5558 41 1 2.2056 2.7360 -2.5957 42 1 3.0332 4.2746 -3.0936 43 1 2.0340 3.8369 -0.4134 44 1 3.4623 4.9038 -0.7624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583905656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:37 Heat of formation + Delta-G solvation = -57.050413 kcal Electronic energy + Delta-G solvation = -22255.158178 eV Core-core repulsion = 18980.442987 eV Total energy + Delta-G solvation = -3274.715190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12898 -38.73297 -37.38407 -35.17968 -33.43748 -32.55206 -31.17556 -30.59810 -26.07464 -25.90411 -24.81685 -24.25868 -22.97792 -21.92388 -20.70747 -19.65778 -18.44885 -17.17862 -16.76630 -16.19493 -15.90647 -15.67526 -15.50766 -14.85145 -14.71232 -14.42713 -13.63774 -13.31065 -13.12069 -13.06815 -12.86947 -12.49530 -12.36151 -12.18966 -12.15844 -11.98126 -11.68686 -11.37137 -11.16128 -11.12869 -10.90867 -10.63705 -10.51568 -10.44907 -10.21090 -9.94683 -9.65564 -9.49220 -9.17873 -9.00803 -8.71783 -8.31151 -5.95369 -3.99926 3.23526 3.34076 3.34586 3.39377 3.40966 3.51100 4.17057 4.36224 4.46858 4.51890 4.59820 4.68986 4.75485 4.80297 4.92622 5.07266 5.08839 5.27488 5.35124 5.39378 5.48920 5.53057 5.60360 5.63416 5.66234 5.74129 5.76133 5.82537 5.88423 5.94794 6.05119 6.20619 6.22915 6.24873 6.32168 6.78790 6.89949 7.06723 7.74667 7.87200 7.90202 8.08065 8.39337 8.79569 9.08615 9.63496 11.15549 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028859 B = 0.003048 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.009760 B = 9185.022096 C = 9461.316410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.370 6.370 4 C 0.090 3.910 5 H 0.087 0.913 6 C -0.167 4.167 7 C 0.138 3.862 8 H 0.105 0.895 9 N -0.725 5.725 10 C 0.512 3.488 11 O -0.532 6.532 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.135 4.135 25 C -0.104 4.104 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.396 0.604 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.455 -4.447 -9.659 25.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.289 6.289 4 C 0.032 3.968 5 H 0.105 0.895 6 C -0.206 4.206 7 C 0.032 3.968 8 H 0.123 0.877 9 N -0.378 5.378 10 C 0.301 3.699 11 O -0.406 6.406 12 C -0.170 4.170 13 C 0.000 4.000 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.110 4.110 23 C -0.164 4.164 24 C -0.172 4.172 25 C -0.142 4.142 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.230 0.770 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.444 -3.550 -8.883 25.320 hybrid contribution 1.068 -1.151 -0.464 1.637 sum -22.376 -4.701 -9.347 24.702 Atomic orbital electron populations 1.21736 0.93891 1.02119 1.03040 1.22488 0.95484 0.84230 0.99969 1.87931 1.20507 1.25876 1.94558 1.23417 0.80941 0.96257 0.96203 0.89542 1.23960 0.98769 1.00777 0.97069 1.21385 0.82923 0.97609 0.94878 0.87704 1.45871 1.07698 1.41801 1.42387 1.21592 0.85199 0.82824 0.80321 1.90671 1.85971 1.32102 1.31900 1.21868 0.92139 1.00024 1.02925 1.18891 0.89892 0.96678 0.94551 1.21187 0.93600 1.20581 1.21255 0.92681 1.25025 0.99054 0.95190 0.95108 1.69989 1.28187 1.30266 1.24389 0.86654 0.83123 0.79886 0.78261 1.20254 1.21279 1.20262 1.23188 0.96599 0.96569 0.94607 1.22725 0.97868 1.01327 0.94453 1.22777 0.97428 1.00357 0.96650 1.22444 0.99237 0.96198 0.96272 0.91965 0.91277 0.91866 0.93567 0.93412 0.90742 0.88660 0.77041 0.90286 0.90241 0.95818 0.95829 0.92886 0.89369 0.91545 0.90188 0.91632 0.90385 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.05 0.44 6.51 37.16 0.24 0.68 16 3 O -0.37 -3.79 9.54 -35.23 -0.34 -4.12 16 4 C 0.09 0.91 4.10 -26.28 -0.11 0.80 16 5 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 6 C -0.17 -1.97 7.72 -25.75 -0.20 -2.17 16 7 C 0.14 1.80 4.08 -67.48 -0.28 1.52 16 8 H 0.10 1.59 7.54 -51.93 -0.39 1.20 16 9 N -0.73 -10.14 5.07 -53.37 -0.27 -10.41 16 10 C 0.51 9.82 7.83 -10.98 -0.09 9.73 16 11 O -0.53 -12.59 15.62 5.56 0.09 -12.50 16 12 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16 13 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 14 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 16 15 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.57 13.29 55.43 0.74 -26.84 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.11 -1.12 0.92 -154.71 -0.14 -1.26 16 23 C -0.13 -1.18 7.43 -26.28 -0.20 -1.37 16 24 C -0.13 -1.18 8.08 -25.75 -0.21 -1.38 16 25 C -0.10 -1.01 7.55 -26.28 -0.20 -1.21 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.40 4.42 8.54 -40.82 -0.35 4.07 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.78 7.65 -51.93 -0.40 0.39 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -33.44 361.21 -8.68 -42.13 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.85 Total: 0.50 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.47 Total: -10.90 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.47 Total: -37.25 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.25 Total: -16.62 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.44 -8.68 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583905656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.924 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds