Wall clock time and date at job start Tue Mar 31 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47533 * 2 1 4 4 C 1.42902 * 114.00174 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.88449 * 21.84568 * 4 3 2 6 6 C 1.53952 * 113.66488 * 250.49722 * 4 3 2 7 7 C 1.53955 * 87.29427 * 220.79656 * 6 4 3 8 8 H 1.08991 * 113.66438 * 139.30140 * 7 6 4 9 9 N 1.46499 * 113.65676 * 270.26312 * 7 6 4 10 10 C 1.34784 * 119.99893 * 255.49407 * 9 7 6 11 11 O 1.21283 * 119.99649 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72962 * 10 9 7 13 13 C 1.53003 * 109.46624 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46956 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99792 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00025 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00107 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99859 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46826 * 60.00434 * 18 16 14 20 20 H 1.48507 * 109.47116 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47422 * 300.00242 * 18 16 14 22 22 C 1.52906 * 86.78171 * 24.73292 * 7 6 4 23 23 C 1.52913 * 121.13858 * 209.38002 * 22 7 6 24 24 C 1.53955 * 86.78283 * 209.38119 * 23 22 7 25 25 C 1.52912 * 121.13914 * 100.82004 * 22 7 6 26 26 H 1.09005 * 109.46895 * 59.99616 * 1 2 3 27 27 H 1.08998 * 109.47541 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46761 * 300.00376 * 1 2 3 29 29 H 1.08997 * 109.47270 * 239.99605 * 2 1 3 30 30 H 1.09005 * 109.46895 * 120.00384 * 2 1 3 31 31 H 1.08997 * 113.57823 * 106.18759 * 6 4 3 32 32 H 1.09001 * 113.57899 * 335.39371 * 6 4 3 33 33 H 0.97005 * 120.00261 * 75.49618 * 9 7 6 34 34 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 35 35 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 36 36 H 1.09001 * 109.46782 * 299.99104 * 13 12 10 37 37 H 1.08993 * 109.47555 * 59.99547 * 13 12 10 38 38 H 0.97000 * 119.99849 * 179.97438 * 17 16 14 39 39 H 1.08995 * 113.66578 * 323.85187 * 23 22 7 40 40 H 1.09002 * 113.66302 * 94.90976 * 23 22 7 41 41 H 1.09008 * 113.58018 * 270.13298 * 24 23 22 42 42 H 1.08992 * 113.57954 * 139.34343 * 24 23 22 43 43 H 1.08997 * 113.66355 * 265.09722 * 25 22 7 44 44 H 1.09005 * 113.66042 * 36.05611 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9272 0.5642 -0.3727 6 6 4.0092 1.9782 1.3299 7 6 4.9828 2.8265 0.4915 8 1 5.1372 3.8314 0.8842 9 7 6.2374 2.1398 0.1742 10 6 7.3688 2.4662 0.8299 11 8 7.3481 3.3280 1.6830 12 6 8.6581 1.7555 0.5077 13 6 9.7800 2.3107 1.3876 14 6 11.0692 1.5997 1.0659 15 1 11.0865 0.8286 0.3098 16 6 12.2265 1.9335 1.7368 17 7 12.2055 2.8728 2.6571 18 14 13.8244 1.0516 1.3385 19 1 14.1643 1.2648 -0.0913 20 1 14.9136 1.5914 2.1915 21 1 13.6657 -0.4019 1.5982 22 6 3.9442 2.7557 -0.6285 23 6 4.3616 2.8098 -2.0985 24 6 2.9922 3.4572 -2.3737 25 6 3.0013 3.9267 -0.9076 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 4.5015 1.2064 1.9216 32 1 3.3031 2.5716 1.9107 33 1 6.2538 1.4502 -0.5079 34 1 8.5421 0.6885 0.6978 35 1 8.9072 1.9127 -0.5416 36 1 9.8961 3.3778 1.1979 37 1 9.5306 2.1532 2.4369 38 1 13.0197 3.1073 3.1293 39 1 5.2053 3.4728 -2.2897 40 1 4.4809 1.8275 -2.5558 41 1 2.2056 2.7360 -2.5957 42 1 3.0332 4.2746 -3.0936 43 1 2.0340 3.8369 -0.4134 44 1 3.4623 4.9038 -0.7624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583905656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:36 Heat of formation + Delta-G solvation = -78.631684 kcal Electronic energy + Delta-G solvation = -22256.094012 eV Core-core repulsion = 18980.442987 eV Total energy + Delta-G solvation = -3275.651024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.08448 -40.20821 -38.13049 -36.25257 -35.53801 -33.80358 -32.77982 -31.60782 -27.90911 -26.73911 -25.77539 -25.33883 -23.69758 -23.52659 -21.80667 -21.15395 -19.40718 -18.79171 -17.93855 -17.43325 -17.03733 -16.69086 -16.46356 -16.43536 -16.33022 -15.64324 -14.96325 -14.46810 -14.28910 -14.08656 -13.96376 -13.69618 -13.61169 -13.26690 -13.23505 -13.02380 -12.79771 -12.76543 -12.50945 -12.38327 -12.10872 -11.91792 -11.90072 -11.64415 -11.35378 -11.32074 -11.29035 -11.04823 -10.71423 -10.55735 -10.27819 -9.96287 -8.17523 -6.31789 1.42225 1.46842 1.54538 1.69738 2.14442 2.44268 2.70494 3.15368 3.30446 3.48113 3.67816 3.77865 3.83889 3.95415 4.04873 4.21585 4.24682 4.38168 4.47169 4.53226 4.54183 4.55442 4.57010 4.76866 4.83945 4.88233 4.88425 4.94274 4.98565 5.07096 5.09484 5.10991 5.18052 5.30245 5.41847 5.48794 5.56243 5.58257 5.63792 5.86028 6.17869 6.33649 6.61045 6.86798 7.35301 7.38762 8.95012 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028859 B = 0.003048 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.009760 B = 9185.022096 C = 9461.316410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.381 6.381 4 C 0.102 3.898 5 H 0.104 0.896 6 C -0.167 4.167 7 C 0.126 3.874 8 H 0.076 0.924 9 N -0.697 5.697 10 C 0.514 3.486 11 O -0.588 6.588 12 C -0.118 4.118 13 C 0.042 3.958 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.974 3.026 19 H -0.262 1.262 20 H -0.288 1.288 21 H -0.262 1.262 22 C -0.101 4.101 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.108 4.108 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.415 0.585 34 H 0.105 0.895 35 H 0.106 0.894 36 H -0.019 1.019 37 H -0.019 1.019 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.111 -6.878 -12.210 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.300 6.300 4 C 0.044 3.956 5 H 0.122 0.878 6 C -0.207 4.207 7 C 0.020 3.980 8 H 0.094 0.906 9 N -0.349 5.349 10 C 0.303 3.697 11 O -0.467 6.467 12 C -0.158 4.158 13 C 0.005 3.995 14 C -0.581 4.581 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.102 4.102 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.146 4.146 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.252 0.748 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.000 1.000 37 H 0.000 1.000 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.155 -6.027 -11.492 27.420 hybrid contribution 1.174 -0.363 0.367 1.282 sum -22.981 -6.390 -11.125 26.320 Atomic orbital electron populations 1.21745 0.92977 1.03185 1.02650 1.22694 0.96295 0.83233 1.00659 1.87924 1.20181 1.27450 1.94483 1.23288 0.81364 0.96559 0.94360 0.87805 1.23940 0.98398 1.00338 0.97977 1.21480 0.82870 0.96416 0.97240 0.90572 1.45485 1.06684 1.41367 1.41379 1.21376 0.86239 0.82069 0.80000 1.90660 1.86815 1.34640 1.34613 1.21636 0.90411 1.01019 1.02706 1.18683 0.92669 0.94598 0.93596 1.21695 0.94090 1.20854 1.21490 0.90499 1.26154 1.03695 0.95939 0.94736 1.70177 1.29406 1.32345 1.25926 0.85372 0.77425 0.78888 0.78542 1.18635 1.21419 1.18641 1.23151 0.95470 0.97134 0.94466 1.22732 0.97992 1.02196 0.93202 1.22726 0.97107 1.00608 0.95756 1.22485 0.98802 0.95876 0.97408 0.91985 0.89508 0.92618 0.92205 0.93344 0.91514 0.88980 0.74766 0.87651 0.87587 1.00016 1.00046 0.92873 0.90057 0.89847 0.89575 0.90726 0.90739 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.65 6.51 71.98 0.47 1.12 16 3 O -0.38 -7.02 9.54 -148.98 -1.42 -8.44 16 4 C 0.10 1.86 4.10 30.89 0.13 1.99 16 5 H 0.10 1.55 7.90 -2.39 -0.02 1.53 16 6 C -0.17 -3.89 7.72 31.23 0.24 -3.65 16 7 C 0.13 3.26 4.08 45.28 0.18 3.44 16 8 H 0.08 2.45 7.54 -2.39 -0.02 2.43 16 9 N -0.70 -18.81 5.07 -441.15 -2.24 -21.05 16 10 C 0.51 19.95 7.83 87.65 0.69 20.63 16 11 O -0.59 -29.34 15.62 -3.04 -0.05 -29.39 16 12 C -0.12 -4.70 5.64 29.85 0.17 -4.53 16 13 C 0.04 2.36 4.26 29.85 0.13 2.49 16 14 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 15 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 16 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 17 N -0.94 -60.02 13.29 21.45 0.28 -59.74 16 18 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 22 C -0.10 -1.94 0.92 -52.31 -0.05 -1.99 16 23 C -0.12 -1.99 7.43 30.89 0.23 -1.76 16 24 C -0.12 -1.87 8.08 31.23 0.25 -1.62 16 25 C -0.11 -1.98 7.55 30.88 0.23 -1.75 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.42 8.13 8.54 -92.70 -0.79 7.34 16 34 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 35 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 36 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 37 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 38 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.43 7.65 -2.39 -0.02 1.41 16 44 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -76.04 361.21 2.88 -73.16 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.17 Total: 16.40 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 4.11 Total: -17.28 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.95 Total: -80.79 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.47 Total: -37.83 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -76.04 2.88 -73.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583905656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.473 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds