Wall clock time and date at job start Tue Mar 31 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 113.99863 * 2 1 4 4 C 1.50700 * 109.46760 * 179.97438 * 3 2 1 5 5 C 1.29453 * 117.69659 * 0.02562 * 4 3 2 6 6 C 1.50323 * 123.64941 * 181.13826 * 5 4 3 7 7 N 1.47128 * 109.10492 * 348.53758 * 6 5 4 8 8 C 1.34777 * 121.53297 * 223.15874 * 7 6 5 9 9 O 1.21275 * 119.99684 * 180.23383 * 8 7 6 10 10 C 1.50703 * 120.00229 * 0.23212 * 8 7 6 11 11 C 1.52993 * 109.47004 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47077 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47183 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.46935 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00343 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99893 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00026 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46969 * 89.99777 * 18 16 14 20 20 H 1.48496 * 109.47074 * 209.99752 * 18 16 14 21 21 H 1.48496 * 109.46992 * 329.99838 * 18 16 14 22 22 C 1.47338 * 117.08653 * 43.37899 * 7 6 5 23 23 C 1.49974 * 117.68933 * 180.02562 * 4 3 2 24 24 H 1.08998 * 109.47185 * 300.00386 * 1 2 3 25 25 H 1.09005 * 109.46816 * 59.99867 * 1 2 3 26 26 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46843 * 60.00180 * 3 2 1 28 28 H 1.08999 * 109.47122 * 299.99867 * 3 2 1 29 29 H 1.08002 * 118.17190 * 0.85003 * 5 4 3 30 30 H 1.08998 * 109.52211 * 108.64467 * 6 5 4 31 31 H 1.08995 * 109.52306 * 228.83000 * 6 5 4 32 32 H 1.09003 * 109.46510 * 300.00490 * 10 8 7 33 33 H 1.09003 * 109.46996 * 59.99577 * 10 8 7 34 34 H 1.08998 * 109.46937 * 299.99663 * 11 10 8 35 35 H 1.08996 * 109.47438 * 60.00188 * 11 10 8 36 36 H 1.09002 * 109.47249 * 300.00177 * 12 11 10 37 37 H 1.09003 * 109.46869 * 59.99526 * 12 11 10 38 38 H 1.08998 * 109.47128 * 299.99957 * 13 12 11 39 39 H 1.09001 * 109.46707 * 60.00488 * 13 12 11 40 40 H 0.96999 * 119.99814 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.77185 * 178.39726 * 22 7 6 42 42 H 1.08999 * 109.82370 * 57.62443 * 22 7 6 43 43 H 1.09000 * 109.31202 * 281.28990 * 23 4 3 44 44 H 1.08998 * 109.31475 * 40.72186 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.0218 -0.0037 0.0005 6 6 5.4997 -0.2773 0.0260 7 7 6.2261 0.9770 -0.2266 8 6 7.2887 1.0217 -1.0545 9 8 7.8696 2.0701 -1.2394 10 6 7.7550 -0.2311 -1.7505 11 6 8.9686 0.0925 -2.6240 12 6 9.4424 -1.1795 -3.3301 13 6 10.6558 -0.8558 -4.2041 14 6 11.1228 -2.1087 -4.8991 15 1 10.6056 -3.0425 -4.7342 16 6 12.2096 -2.0629 -5.7463 17 7 12.6169 -3.1562 -6.3532 18 14 13.1036 -0.4478 -6.0320 19 1 14.1911 -0.3003 -5.0316 20 1 13.6839 -0.4383 -7.3989 21 1 12.1466 0.6791 -5.8927 22 6 5.7444 2.1830 0.4693 23 6 4.3122 2.4552 0.0013 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8901 28 1 1.6886 1.8464 -0.8900 29 1 3.3472 -0.8470 -0.0141 30 1 5.7799 -0.6744 1.0016 31 1 5.7493 -1.0023 -0.7487 32 1 8.0318 -0.9782 -1.0067 33 1 6.9508 -0.6206 -2.3748 34 1 8.6921 0.8398 -3.3677 35 1 9.7725 0.4817 -1.9993 36 1 9.7190 -1.9265 -2.5861 37 1 8.6386 -1.5691 -3.9547 38 1 10.3787 -0.1089 -4.9482 39 1 11.4597 -0.4659 -3.5797 40 1 13.3817 -3.1240 -6.9489 41 1 6.3814 3.0317 0.2200 42 1 5.7556 2.0175 1.5465 43 1 4.3345 2.8678 -1.0073 44 1 3.8446 3.1757 0.6724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588687001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:20 Heat of formation + Delta-G solvation = -83.005137 kcal Electronic energy + Delta-G solvation = -21499.468974 eV Core-core repulsion = 18223.628303 eV Total energy + Delta-G solvation = -3275.840671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.35430 -38.79506 -37.27761 -35.01666 -33.71545 -32.58423 -31.56335 -30.03037 -28.53543 -26.65702 -25.75290 -24.38870 -23.56731 -21.80187 -20.01898 -19.83683 -17.71014 -17.23783 -16.83531 -16.56121 -16.36406 -15.91512 -15.77219 -15.56407 -14.78859 -14.22818 -14.16423 -13.69059 -13.59784 -13.44810 -13.14104 -12.79446 -12.61716 -12.43980 -12.13572 -12.07174 -11.90803 -11.71192 -11.46356 -11.07863 -11.02804 -10.68491 -10.50238 -10.29710 -9.91680 -9.77907 -9.61212 -9.38287 -9.15561 -9.08703 -8.82162 -8.46654 -5.97891 -3.95103 1.83370 2.67288 2.82017 3.26172 3.37562 3.44380 3.50823 4.27615 4.49335 4.52666 4.72729 4.74813 4.81688 4.83235 4.86034 4.94998 5.00001 5.09141 5.21403 5.23006 5.25233 5.30434 5.33193 5.37315 5.49260 5.58523 5.69187 5.82651 6.07226 6.14868 6.22249 6.28879 6.40752 6.46660 6.72426 6.80256 6.85940 7.02940 7.31303 7.41824 7.54568 7.87731 8.18458 8.61310 9.07283 9.65596 11.15623 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028496 B = 0.002635 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.346262 B =10624.746745 C =11229.903114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.095 3.905 4 C -0.130 4.130 5 C -0.150 4.150 6 C 0.137 3.863 7 N -0.623 5.623 8 C 0.520 3.480 9 O -0.538 6.538 10 C -0.138 4.138 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.016 4.016 14 C -0.518 4.518 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.264 1.264 22 C 0.113 3.887 23 C -0.095 4.095 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.029 9.296 17.429 31.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.019 3.981 4 C -0.130 4.130 5 C -0.168 4.168 6 C 0.015 3.985 7 N -0.358 5.358 8 C 0.309 3.691 9 O -0.414 6.414 10 C -0.178 4.178 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.556 4.556 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.010 4.010 23 C -0.132 4.132 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.151 0.849 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.453 9.628 17.184 31.400 hybrid contribution 0.091 0.889 -0.186 0.913 sum -24.362 10.517 16.998 31.513 Atomic orbital electron populations 1.22753 0.80675 1.03002 1.00029 1.87833 1.19862 1.27640 1.95490 1.21367 0.91531 0.84760 1.00462 1.20552 0.93529 0.95475 1.03487 1.22319 0.96042 0.98412 1.00047 1.20648 0.89035 0.86390 1.02468 1.48331 1.31136 1.09785 1.46590 1.21032 0.78603 0.91492 0.77931 1.90682 1.55481 1.32550 1.62680 1.21808 1.00763 0.95122 1.00096 1.21488 0.95270 0.99449 0.98187 1.21476 0.99075 0.95060 0.98379 1.19579 0.93368 0.97468 0.94895 1.21190 1.13632 0.95181 1.25623 0.91102 1.25048 0.96967 0.96232 0.95431 1.69923 1.26582 1.27579 1.30485 0.86769 0.80233 0.84952 0.77324 1.20327 1.21483 1.18900 1.21570 0.93999 0.89253 0.96194 1.20628 0.94732 0.95089 1.02799 0.94020 0.93957 0.89400 0.92307 0.92330 0.84875 0.90109 0.88317 0.88961 0.88976 0.91839 0.91806 0.92850 0.92855 0.96630 0.97055 0.92848 0.88517 0.91186 0.90275 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.21 8.79 -35.23 -0.31 -3.52 16 3 C 0.09 0.68 6.23 36.01 0.22 0.91 16 4 C -0.13 -1.09 5.86 -100.99 -0.59 -1.68 16 5 C -0.15 -1.30 9.31 -35.78 -0.33 -1.63 16 6 C 0.14 1.18 6.50 -5.03 -0.03 1.15 16 7 N -0.62 -6.95 2.97 -174.02 -0.52 -7.46 16 8 C 0.52 7.43 7.73 -10.98 -0.08 7.35 16 9 O -0.54 -9.71 15.47 5.56 0.09 -9.63 16 10 C -0.14 -1.85 4.14 -27.89 -0.12 -1.97 16 11 C -0.11 -1.84 4.50 -26.73 -0.12 -1.96 16 12 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 13 C -0.02 -0.39 4.04 -27.88 -0.11 -0.51 16 14 C -0.52 -15.23 9.66 -34.44 -0.33 -15.57 16 15 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.63 13.96 55.43 0.77 -27.85 16 18 Si 0.88 22.60 27.47 -169.99 -4.67 17.93 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 22 C 0.11 1.07 6.50 -3.53 -0.02 1.05 16 23 C -0.09 -0.75 5.97 -28.18 -0.17 -0.92 16 24 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.13 1.16 6.42 -52.49 -0.34 0.83 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.78 6.27 -51.93 -0.33 0.46 16 32 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 33 H 0.09 1.09 7.59 -51.93 -0.39 0.70 16 34 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 35 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 40 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 41 H 0.10 1.06 7.07 -51.93 -0.37 0.69 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -34.87 353.78 -7.81 -42.68 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -7.69 Total: -4.62 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -0.81 Total: -12.86 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.26 Total: -35.32 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.22 Total: -13.15 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.67 Total: 17.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.87 -7.81 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588687001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.323 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds