Wall clock time and date at job start Tue Mar 31 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99910 * 2 1 4 4 N 1.46496 * 109.47495 * 125.48619 * 3 2 1 5 5 C 1.46499 * 119.99575 * 269.40756 * 4 3 2 6 6 C 1.50695 * 109.47268 * 274.03661 * 5 4 3 7 7 H 1.08007 * 119.99875 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00216 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00073 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00157 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46699 * 60.00063 * 10 8 6 12 12 H 1.48494 * 109.47152 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47144 * 300.00481 * 10 8 6 14 14 C 1.34773 * 120.00303 * 89.40397 * 4 3 2 15 15 O 1.21283 * 119.99584 * 5.26306 * 14 4 3 16 16 C 1.50694 * 120.00574 * 185.26124 * 14 4 3 17 17 C 1.52995 * 109.47607 * 154.40656 * 16 14 4 18 18 C 1.53002 * 109.47138 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47241 * 299.99874 * 18 17 16 20 20 O 1.42898 * 109.46974 * 179.97438 * 19 18 17 21 21 C 1.42900 * 113.99412 * 90.00400 * 20 19 18 22 22 C 1.53005 * 109.46642 * 60.00213 * 19 18 17 23 23 C 1.52998 * 109.47394 * 299.99625 * 22 19 18 24 24 H 1.07997 * 120.00404 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.99711 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00404 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46743 * 5.48136 * 3 2 1 28 28 H 1.09004 * 109.46726 * 245.49070 * 3 2 1 29 29 H 1.08997 * 109.47221 * 34.04354 * 5 4 3 30 30 H 1.09007 * 109.46734 * 154.04401 * 5 4 3 31 31 H 0.97002 * 120.00142 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46885 * 34.40461 * 16 14 4 33 33 H 1.09002 * 109.46954 * 300.00037 * 17 16 14 34 34 H 1.09005 * 109.46860 * 60.00430 * 17 16 14 35 35 H 1.08995 * 109.46809 * 60.00422 * 18 17 16 36 36 H 1.08997 * 109.47120 * 179.97438 * 18 17 16 37 37 H 1.08994 * 109.47102 * 300.00527 * 19 18 17 38 38 H 1.09002 * 109.47476 * 60.00500 * 21 20 19 39 39 H 1.09007 * 109.46630 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47623 * 299.99495 * 21 20 19 41 41 H 1.09002 * 109.46644 * 180.02562 * 22 19 18 42 42 H 1.08995 * 109.47543 * 60.00011 * 22 19 18 43 43 H 1.09005 * 109.47167 * 300.00628 * 23 22 19 44 44 H 1.08997 * 109.47385 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0020 1.3273 1.1246 5 6 2.5806 1.8668 2.4198 6 6 2.7863 3.3596 2.4331 7 1 3.1902 3.8568 1.5635 8 6 2.4590 4.0907 3.5553 9 7 1.9676 3.4852 4.6143 10 14 2.7133 5.9412 3.5715 11 1 1.9051 6.5613 2.4909 12 1 2.2874 6.4879 4.8848 13 1 4.1501 6.2454 3.3516 14 6 4.2531 0.8512 0.9678 15 8 4.6328 0.4931 -0.1270 16 6 5.1803 0.7639 2.1525 17 6 6.2217 -0.3294 1.9058 18 6 7.1634 -0.4174 3.1085 19 6 7.8701 0.9256 3.3024 20 8 8.7491 0.8435 4.4260 21 6 10.0725 0.4152 4.0984 22 6 6.8285 2.0189 3.5491 23 6 5.8869 2.1071 2.3465 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3592 2.1312 0.0982 28 1 2.6143 1.4066 -0.9351 29 1 1.5258 1.6439 2.5804 30 1 3.1732 1.4113 3.2133 31 1 1.7377 3.9995 5.4040 32 1 4.6054 0.5230 3.0468 33 1 5.7182 -1.2861 1.7672 34 1 6.7966 -0.0883 1.0116 35 1 6.5888 -0.6582 4.0029 36 1 7.9050 -1.1966 2.9329 37 1 8.4445 1.1663 2.4079 38 1 10.5173 1.1168 3.3927 39 1 10.6774 0.3792 5.0045 40 1 10.0324 -0.5767 3.6483 41 1 7.3320 2.9759 3.6868 42 1 6.2540 1.7783 4.4435 43 1 6.4614 2.3478 1.4520 44 1 5.1452 2.8863 2.5221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590040635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:26 Heat of formation + Delta-G solvation = -82.954210 kcal Electronic energy + Delta-G solvation = -23287.138720 eV Core-core repulsion = 20011.300256 eV Total energy + Delta-G solvation = -3275.838463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.81262 -38.39653 -36.01443 -35.30777 -33.44516 -32.15511 -30.47169 -29.95893 -27.49659 -26.61389 -25.50033 -23.07647 -22.32145 -22.18577 -20.08755 -19.41529 -18.15612 -16.57626 -16.47986 -16.22607 -15.79960 -15.33653 -15.00681 -14.60887 -14.47880 -14.17372 -13.62261 -13.27011 -13.14135 -12.71331 -12.60792 -12.29607 -12.07373 -11.85830 -11.65272 -11.53379 -11.33055 -11.13842 -10.91364 -10.89004 -10.86369 -10.72227 -10.57824 -10.24380 -10.14066 -9.97200 -9.74760 -9.24457 -9.17720 -8.80712 -8.52086 -7.73220 -6.19247 -4.25948 2.57251 3.23334 3.29138 3.30198 3.41947 3.83766 4.06455 4.33057 4.94762 4.99387 5.13708 5.18921 5.25577 5.32823 5.37968 5.48415 5.51559 5.54947 5.60170 5.63064 5.76037 5.80210 5.84790 5.95434 6.14365 6.18062 6.22849 6.25027 6.34652 6.36558 6.50685 6.56407 6.70506 6.83432 6.92848 6.94797 7.06842 7.22470 7.34809 7.55685 7.75079 8.04871 8.35806 8.78001 9.02849 9.40832 10.87249 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.006694 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.039757 B = 4181.786826 C = 6020.674024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C 0.142 3.858 4 N -0.591 5.591 5 C 0.236 3.764 6 C -0.536 4.536 7 H 0.061 0.939 8 C 0.068 3.932 9 N -0.888 5.888 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.521 3.479 15 O -0.576 6.576 16 C -0.100 4.100 17 C -0.097 4.097 18 C -0.137 4.137 19 C 0.088 3.912 20 O -0.387 6.387 21 C 0.032 3.968 22 C -0.109 4.109 23 C -0.112 4.112 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.266 0.734 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.535 -5.907 -2.421 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.174 4.174 3 C 0.019 3.981 4 N -0.320 5.320 5 C 0.116 3.884 6 C -0.575 4.575 7 H 0.079 0.921 8 C -0.136 4.136 9 N -0.526 5.526 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.309 3.691 15 O -0.458 6.458 16 C -0.121 4.121 17 C -0.135 4.135 18 C -0.175 4.175 19 C 0.031 3.969 20 O -0.306 6.306 21 C -0.065 4.065 22 C -0.147 4.147 23 C -0.149 4.149 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.578 -5.989 -2.586 9.999 hybrid contribution 0.094 0.901 -0.028 0.907 sum 7.672 -5.088 -2.614 9.569 Atomic orbital electron populations 1.23759 0.95778 1.01524 1.02024 1.23389 0.96079 0.99307 0.98608 1.20394 0.92166 0.94647 0.90905 1.48231 1.10807 1.59156 1.13856 1.19497 0.96569 0.93806 0.78532 1.21395 1.43742 0.92123 1.00208 0.92089 1.24912 0.94704 0.98635 0.95300 1.69908 1.42459 1.36190 1.04024 0.86637 0.78899 0.85157 0.77311 1.20185 1.21143 1.19946 1.20517 0.82339 0.76448 0.89773 1.90568 1.76151 1.51666 1.27401 1.21262 0.95861 0.97219 0.97796 1.21330 0.96386 0.98165 0.97634 1.22008 0.98866 0.97204 0.99373 1.22283 0.90862 0.95585 0.88207 1.87923 1.20917 1.88220 1.33501 1.22731 0.84438 0.98221 1.01133 1.21544 0.96011 0.97414 0.99718 1.21588 0.98997 0.97323 0.97035 0.88432 0.88960 0.87981 0.89879 0.90218 0.94870 0.93868 0.92425 0.88530 0.91887 0.91189 0.91009 0.92208 0.92408 0.94325 0.90072 0.94329 0.91438 0.90626 0.92487 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.32 29.01 0.42 -2.41 16 2 C -0.15 -2.58 9.84 -36.02 -0.35 -2.93 16 3 C 0.14 2.66 5.90 -5.19 -0.03 2.63 16 4 N -0.59 -12.32 2.44 -176.44 -0.43 -12.75 16 5 C 0.24 5.44 4.90 -5.20 -0.03 5.42 16 6 C -0.54 -13.35 7.39 -34.44 -0.25 -13.61 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -23.85 13.29 55.43 0.74 -23.11 16 10 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 C 0.52 10.71 6.76 -10.99 -0.07 10.63 16 15 O -0.58 -12.85 15.67 5.55 0.09 -12.76 16 16 C -0.10 -1.81 1.76 -91.77 -0.16 -1.97 16 17 C -0.10 -1.51 4.74 -26.73 -0.13 -1.64 16 18 C -0.14 -1.89 5.54 -26.73 -0.15 -2.04 16 19 C 0.09 1.26 2.61 -26.73 -0.07 1.19 16 20 O -0.39 -5.57 10.35 -35.23 -0.36 -5.94 16 21 C 0.03 0.33 10.82 101.05 1.09 1.43 16 22 C -0.11 -1.75 5.57 -26.73 -0.15 -1.90 16 23 C -0.11 -1.99 5.14 -26.73 -0.14 -2.13 16 24 H 0.10 1.38 7.84 -52.49 -0.41 0.97 16 25 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 26 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.08 1.55 7.72 -51.93 -0.40 1.15 16 28 H 0.08 1.51 7.37 -51.93 -0.38 1.13 16 29 H 0.03 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.04 1.03 5.67 -51.93 -0.29 0.73 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.10 1.80 6.18 -51.93 -0.32 1.48 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.13 7.87 -51.93 -0.41 0.72 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.73 7.87 -51.93 -0.41 0.32 16 37 H 0.06 0.78 7.79 -51.93 -0.40 0.38 16 38 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.11 2.26 5.76 -51.93 -0.30 1.96 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -27.75 352.57 -7.31 -35.06 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.51 Total: 4.79 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.12 Total: -5.69 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.31 Total: -35.86 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.28 Total: -18.70 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.75 -7.31 -35.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590040635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.897 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds