Wall clock time and date at job start Tue Mar 31 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.42907 * 114.00357 * 2 1 4 4 C 1.52998 * 109.47291 * 184.85679 * 3 2 1 5 5 N 1.46903 * 109.47296 * 62.09621 * 4 3 2 6 6 C 1.46898 * 110.99893 * 200.07500 * 5 4 3 7 7 C 1.50703 * 109.47433 * 72.16499 * 6 5 4 8 8 C 1.34514 * 125.78532 * 90.37575 * 7 6 5 9 9 C 1.41389 * 106.83626 * 180.02562 * 8 7 6 10 10 C 1.34518 * 106.83991 * 0.02562 * 9 8 7 11 11 O 1.34299 * 108.42115 * 359.73246 * 10 9 8 12 12 C 1.46897 * 110.99647 * 76.11918 * 5 4 3 13 13 C 1.53003 * 109.46841 * 200.27948 * 12 5 4 14 14 H 1.08995 * 109.47384 * 304.68281 * 13 12 5 15 15 C 1.53006 * 109.47101 * 184.68161 * 13 12 5 16 16 C 1.53002 * 109.46935 * 64.68449 * 13 12 5 17 17 C 1.50698 * 109.47307 * 184.99835 * 16 13 12 18 18 H 1.08003 * 119.99608 * 0.02562 * 17 16 13 19 19 C 1.37870 * 120.00268 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00135 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00251 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46989 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47356 * 119.99947 * 21 19 17 24 24 H 1.48497 * 109.46977 * 240.00220 * 21 19 17 25 25 H 1.09003 * 109.47306 * 64.86797 * 1 2 3 26 26 H 1.09002 * 109.47698 * 184.86911 * 1 2 3 27 27 H 1.09001 * 109.47385 * 304.87184 * 1 2 3 28 28 H 1.08993 * 109.46840 * 64.85326 * 3 2 1 29 29 H 1.08999 * 109.46690 * 304.85623 * 3 2 1 30 30 H 1.08998 * 109.46901 * 302.09814 * 4 3 2 31 31 H 1.08996 * 109.47359 * 182.09702 * 4 3 2 32 32 H 1.09000 * 109.47073 * 192.16307 * 6 5 4 33 33 H 1.08997 * 109.46999 * 312.16594 * 6 5 4 34 34 H 1.07996 * 126.58589 * 359.97138 * 8 7 6 35 35 H 1.08005 * 126.57617 * 179.97438 * 9 8 7 36 36 H 1.07997 * 125.78395 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.47009 * 80.29003 * 12 5 4 38 38 H 1.08989 * 109.47556 * 320.28131 * 12 5 4 39 39 H 1.08997 * 109.46879 * 294.63580 * 15 13 12 40 40 H 1.08998 * 109.46891 * 174.63556 * 15 13 12 41 41 H 1.08999 * 109.46891 * 54.63668 * 15 13 12 42 42 H 1.09001 * 109.46867 * 304.99478 * 16 13 12 43 43 H 1.08997 * 109.47444 * 64.99915 * 16 13 12 44 44 H 0.96996 * 120.00160 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1867 -0.1221 5 7 3.8708 0.5451 -1.3991 6 6 5.2287 -0.0141 -1.3621 7 6 5.2443 -1.2378 -0.4827 8 6 5.0261 -2.5014 -0.8892 9 6 5.1346 -3.3243 0.2553 10 6 5.4121 -2.5143 1.2928 11 8 5.4828 -1.2524 0.8389 12 6 3.7188 1.4852 -2.5175 13 6 3.5793 0.7036 -3.8254 14 1 4.4304 0.0324 -3.9402 15 6 3.5382 1.6810 -5.0018 16 6 2.2859 -0.1134 -3.7958 17 6 2.2086 -0.9765 -5.0286 18 1 3.0027 -0.9457 -5.7600 19 6 1.1246 -1.8061 -5.2225 20 7 0.1578 -1.8439 -4.3317 21 14 1.0290 -2.8765 -6.7504 22 1 2.2332 -2.6501 -7.5896 23 1 0.9652 -4.3053 -6.3508 24 1 -0.1874 -2.5246 -7.5260 25 1 -0.3634 0.4365 -0.9304 26 1 -0.3634 -1.0239 0.0872 27 1 -0.3634 0.5876 0.8431 28 1 1.7591 1.8150 0.9302 29 1 1.6214 1.8762 -0.8433 30 1 3.9153 0.5845 0.7009 31 1 3.9769 2.1804 -0.0847 32 1 5.5365 -0.2879 -2.3712 33 1 5.9171 0.7300 -0.9615 34 1 4.8088 -2.8251 -1.8964 35 1 5.0165 -4.3974 0.2901 36 1 5.5583 -2.8266 2.3163 37 1 4.5958 2.1302 -2.5717 38 1 2.8287 2.0945 -2.3617 39 1 2.6357 2.2887 -4.9379 40 1 3.5349 1.1228 -5.9380 41 1 4.4149 2.3278 -4.9675 42 1 2.2761 -0.7460 -2.9082 43 1 1.4304 0.5615 -3.7705 44 1 -0.6049 -2.4273 -4.4683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590593854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:20 Heat of formation + Delta-G solvation = -32.540624 kcal Electronic energy + Delta-G solvation = -23412.484403 eV Core-core repulsion = 20138.832037 eV Total energy + Delta-G solvation = -3273.652366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16890 -38.29941 -36.72627 -34.34866 -32.63118 -31.98712 -30.81363 -28.84251 -26.90300 -25.90796 -25.79554 -23.92365 -22.68997 -21.42339 -20.90231 -20.01790 -18.81669 -17.12973 -16.26597 -16.06074 -15.90435 -15.51296 -15.04350 -14.69355 -14.44945 -14.08077 -13.91507 -13.37924 -12.94507 -12.52986 -12.42776 -12.32623 -12.23398 -11.98211 -11.89763 -11.51984 -11.40478 -11.21707 -11.11311 -10.80519 -10.75593 -10.46680 -10.26967 -10.09486 -9.59144 -9.49041 -9.07783 -8.99411 -8.76388 -8.17315 -8.11166 -7.76928 -5.81378 -3.81126 2.07229 3.03089 3.32319 3.38954 3.46745 3.49871 4.24976 4.37369 4.58986 4.97239 5.20752 5.35813 5.42364 5.46578 5.53824 5.55390 5.60705 5.63447 5.74529 5.79796 5.85031 5.95621 5.99046 6.08559 6.18531 6.20389 6.29519 6.31046 6.38624 6.41538 6.46767 6.53653 6.91571 7.00651 7.06595 7.33897 7.39927 7.53309 7.56277 7.77734 7.92910 8.15766 8.35798 8.64960 9.27590 9.80270 11.29307 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.005945 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.034813 B = 4708.356213 C = 5030.183506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.362 6.362 3 C 0.071 3.929 4 C 0.055 3.945 5 N -0.511 5.511 6 C 0.139 3.861 7 C 0.001 3.999 8 C -0.182 4.182 9 C -0.210 4.210 10 C -0.055 4.055 11 O -0.184 6.184 12 C 0.063 3.937 13 C -0.083 4.083 14 H 0.055 0.945 15 C -0.132 4.132 16 C 0.038 3.962 17 C -0.511 4.511 18 H 0.050 0.950 19 C 0.057 3.943 20 N -0.891 5.891 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.287 1.287 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.025 0.975 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.041 0.959 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.195 0.805 37 H 0.022 0.978 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.027 0.973 42 H 0.041 0.959 43 H 0.004 0.996 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.203 5.159 10.967 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C -0.007 4.007 4 C -0.073 4.073 5 N -0.235 5.235 6 C 0.012 3.988 7 C -0.049 4.049 8 C -0.202 4.202 9 C -0.229 4.229 10 C -0.123 4.123 11 O -0.080 6.080 12 C -0.064 4.064 13 C -0.102 4.102 14 H 0.073 0.927 15 C -0.190 4.190 16 C 0.001 3.999 17 C -0.549 4.549 18 H 0.068 0.932 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.709 3.291 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.214 1.214 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.212 0.788 37 H 0.040 0.960 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.022 0.978 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.880 4.796 11.091 14.427 hybrid contribution -0.055 -0.111 -0.763 0.773 sum 7.825 4.685 10.328 13.779 Atomic orbital electron populations 1.22642 0.81713 1.02325 0.99205 1.88042 1.18818 1.26115 1.95050 1.22435 0.93410 0.86035 0.98809 1.22167 0.94802 0.97328 0.93047 1.61778 1.23470 1.35757 1.02495 1.20491 0.90354 0.90591 0.97393 1.22219 1.04745 0.97084 0.80901 1.21636 1.05725 0.92175 1.00692 1.21818 1.07386 1.00687 0.92994 1.23804 1.07734 0.81100 0.99613 1.83943 1.70163 1.30393 1.23532 1.22349 0.99252 0.93120 0.91701 1.21238 1.02220 0.96302 0.90471 0.92699 1.21703 0.99037 0.98438 0.99799 1.19030 0.89273 0.94118 0.97473 1.21347 1.04735 1.22722 1.06131 0.93153 1.24956 0.96161 0.97150 0.96029 1.69992 1.09458 1.39052 1.34544 0.86727 0.77698 0.80713 0.83948 1.19984 1.21270 1.21356 0.93623 0.89998 0.95663 0.94186 0.93326 0.90243 0.93838 0.87491 0.94056 0.83192 0.83955 0.78815 0.96029 0.91222 0.93619 0.92029 0.95391 0.94060 0.97762 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 11.01 101.05 1.11 1.75 16 2 O -0.36 -7.01 10.60 -35.23 -0.37 -7.39 16 3 C 0.07 1.12 6.11 37.16 0.23 1.34 16 4 C 0.05 0.83 5.19 -3.82 -0.02 0.81 16 5 N -0.51 -8.77 3.56 -236.08 -0.84 -9.61 16 6 C 0.14 2.16 5.31 -4.98 -0.03 2.13 16 7 C 0.00 0.01 6.14 -35.62 -0.22 -0.21 16 8 C -0.18 -3.16 10.81 -39.70 -0.43 -3.59 16 9 C -0.21 -3.14 10.91 -39.70 -0.43 -3.57 16 10 C -0.05 -0.75 12.09 29.42 0.36 -0.39 16 11 O -0.18 -2.87 9.78 5.72 0.06 -2.81 16 12 C 0.06 1.06 4.19 -3.82 -0.02 1.05 16 13 C -0.08 -1.68 2.39 -90.61 -0.22 -1.90 16 14 H 0.05 1.12 6.69 -51.93 -0.35 0.77 16 15 C -0.13 -2.44 8.91 37.16 0.33 -2.11 16 16 C 0.04 0.98 4.39 -27.88 -0.12 0.86 16 17 C -0.51 -14.38 8.47 -34.44 -0.29 -14.67 16 18 H 0.05 1.39 7.06 -52.48 -0.37 1.02 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.88 22.03 29.54 -169.99 -5.02 17.01 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.79 6.73 -51.93 -0.35 0.44 16 30 H 0.08 1.25 6.45 -51.93 -0.34 0.91 16 31 H 0.04 0.56 7.99 -51.93 -0.42 0.14 16 32 H 0.11 1.65 6.52 -51.93 -0.34 1.31 16 33 H 0.04 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.15 2.71 8.06 -52.49 -0.42 2.28 16 35 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.20 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.02 0.32 7.99 -51.93 -0.41 -0.10 16 38 H 0.07 1.19 6.49 -51.94 -0.34 0.86 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.22 7.11 -51.93 -0.37 0.85 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.04 1.18 7.61 -51.93 -0.40 0.79 16 43 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -32.39 357.65 -7.35 -39.74 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.45 Total: 0.87 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 0.16 Total: -16.93 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.11 Total: -35.89 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.32 Total: -10.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.39 -7.35 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590593854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.202 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds