Wall clock time and date at job start Tue Mar 31 2020 05:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.42907 * 114.00357 * 2 1 4 4 C 1.52998 * 109.47291 * 184.85679 * 3 2 1 5 5 N 1.46903 * 109.47296 * 62.09621 * 4 3 2 6 6 C 1.46898 * 110.99893 * 200.07500 * 5 4 3 7 7 C 1.50703 * 109.47433 * 72.16499 * 6 5 4 8 8 C 1.34514 * 125.78532 * 90.37575 * 7 6 5 9 9 C 1.41389 * 106.83626 * 180.02562 * 8 7 6 10 10 C 1.34518 * 106.83991 * 0.02562 * 9 8 7 11 11 O 1.34299 * 108.42115 * 359.73246 * 10 9 8 12 12 C 1.46897 * 110.99647 * 76.11918 * 5 4 3 13 13 C 1.53003 * 109.46841 * 200.27948 * 12 5 4 14 14 H 1.08995 * 109.47384 * 304.68281 * 13 12 5 15 15 C 1.53006 * 109.47101 * 184.68161 * 13 12 5 16 16 C 1.53002 * 109.46935 * 64.68449 * 13 12 5 17 17 C 1.50698 * 109.47307 * 184.99835 * 16 13 12 18 18 H 1.08003 * 119.99608 * 0.02562 * 17 16 13 19 19 C 1.37870 * 120.00268 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00135 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00251 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46989 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47356 * 119.99947 * 21 19 17 24 24 H 1.48497 * 109.46977 * 240.00220 * 21 19 17 25 25 H 1.09003 * 109.47306 * 64.86797 * 1 2 3 26 26 H 1.09002 * 109.47698 * 184.86911 * 1 2 3 27 27 H 1.09001 * 109.47385 * 304.87184 * 1 2 3 28 28 H 1.08993 * 109.46840 * 64.85326 * 3 2 1 29 29 H 1.08999 * 109.46690 * 304.85623 * 3 2 1 30 30 H 1.08998 * 109.46901 * 302.09814 * 4 3 2 31 31 H 1.08996 * 109.47359 * 182.09702 * 4 3 2 32 32 H 1.09000 * 109.47073 * 192.16307 * 6 5 4 33 33 H 1.08997 * 109.46999 * 312.16594 * 6 5 4 34 34 H 1.07996 * 126.58589 * 359.97138 * 8 7 6 35 35 H 1.08005 * 126.57617 * 179.97438 * 9 8 7 36 36 H 1.07997 * 125.78395 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.47009 * 80.29003 * 12 5 4 38 38 H 1.08989 * 109.47556 * 320.28131 * 12 5 4 39 39 H 1.08997 * 109.46879 * 294.63580 * 15 13 12 40 40 H 1.08998 * 109.46891 * 174.63556 * 15 13 12 41 41 H 1.08999 * 109.46891 * 54.63668 * 15 13 12 42 42 H 1.09001 * 109.46867 * 304.99478 * 16 13 12 43 43 H 1.08997 * 109.47444 * 64.99915 * 16 13 12 44 44 H 0.96996 * 120.00160 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1867 -0.1221 5 7 3.8708 0.5451 -1.3991 6 6 5.2287 -0.0141 -1.3621 7 6 5.2443 -1.2378 -0.4827 8 6 5.0261 -2.5014 -0.8892 9 6 5.1346 -3.3243 0.2553 10 6 5.4121 -2.5143 1.2928 11 8 5.4828 -1.2524 0.8389 12 6 3.7188 1.4852 -2.5175 13 6 3.5793 0.7036 -3.8254 14 1 4.4304 0.0324 -3.9402 15 6 3.5382 1.6810 -5.0018 16 6 2.2859 -0.1134 -3.7958 17 6 2.2086 -0.9765 -5.0286 18 1 3.0027 -0.9457 -5.7600 19 6 1.1246 -1.8061 -5.2225 20 7 0.1578 -1.8439 -4.3317 21 14 1.0290 -2.8765 -6.7504 22 1 2.2332 -2.6501 -7.5896 23 1 0.9652 -4.3053 -6.3508 24 1 -0.1874 -2.5246 -7.5260 25 1 -0.3634 0.4365 -0.9304 26 1 -0.3634 -1.0239 0.0872 27 1 -0.3634 0.5876 0.8431 28 1 1.7591 1.8150 0.9302 29 1 1.6214 1.8762 -0.8433 30 1 3.9153 0.5845 0.7009 31 1 3.9769 2.1804 -0.0847 32 1 5.5365 -0.2879 -2.3712 33 1 5.9171 0.7300 -0.9615 34 1 4.8088 -2.8251 -1.8964 35 1 5.0165 -4.3974 0.2901 36 1 5.5583 -2.8266 2.3163 37 1 4.5958 2.1302 -2.5717 38 1 2.8287 2.0945 -2.3617 39 1 2.6357 2.2887 -4.9379 40 1 3.5349 1.1228 -5.9380 41 1 4.4149 2.3278 -4.9675 42 1 2.2761 -0.7460 -2.9082 43 1 1.4304 0.5615 -3.7705 44 1 -0.6049 -2.4273 -4.4683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590593854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:19 Heat of formation + Delta-G solvation = -52.930060 kcal Electronic energy + Delta-G solvation = -23413.368555 eV Core-core repulsion = 20138.832037 eV Total energy + Delta-G solvation = -3274.536518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.35640 -39.63101 -38.14418 -36.06822 -34.06078 -33.82512 -32.01304 -30.18845 -28.88499 -27.23759 -27.14194 -25.38424 -24.54666 -22.66382 -22.15011 -21.28706 -20.40896 -18.50558 -18.17959 -17.42914 -17.18579 -16.81537 -16.49147 -16.33266 -15.96817 -15.47693 -15.22721 -14.93834 -14.46016 -14.01565 -13.90610 -13.68581 -13.60431 -13.42141 -13.28050 -13.10516 -12.82392 -12.79604 -12.65789 -12.47596 -12.43066 -12.20410 -11.81777 -11.77203 -11.36223 -10.85798 -10.81959 -10.72407 -10.44937 -10.39272 -9.31520 -9.00440 -8.05573 -6.13054 0.89339 1.38984 1.40038 1.51650 1.80190 2.18253 2.46578 2.99355 3.14563 3.26891 3.82735 4.02401 4.18226 4.22315 4.25212 4.30145 4.37177 4.40658 4.51180 4.56233 4.57441 4.59489 4.66867 4.68798 4.82759 4.91830 4.92587 4.96031 5.01404 5.04355 5.15292 5.31996 5.36346 5.50536 5.57626 5.68842 5.72875 6.00482 6.15099 6.16623 6.27704 6.34021 6.45006 6.50161 7.06820 7.53006 9.05224 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.005945 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.034813 B = 4708.356213 C = 5030.183506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.398 6.398 3 C 0.065 3.935 4 C 0.059 3.941 5 N -0.541 5.541 6 C 0.141 3.859 7 C -0.007 4.007 8 C -0.216 4.216 9 C -0.231 4.231 10 C -0.039 4.039 11 O -0.186 6.186 12 C 0.073 3.927 13 C -0.079 4.079 14 H 0.051 0.949 15 C -0.126 4.126 16 C 0.056 3.944 17 C -0.525 4.525 18 H 0.054 0.946 19 C 0.000 4.000 20 N -0.927 5.927 21 Si 0.949 3.051 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.281 1.281 25 H 0.022 0.978 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.128 0.872 35 H 0.159 0.841 36 H 0.241 0.759 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.003 0.997 43 H -0.029 1.029 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.762 6.183 11.786 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.317 6.317 3 C -0.011 4.011 4 C -0.069 4.069 5 N -0.266 5.266 6 C 0.014 3.986 7 C -0.057 4.057 8 C -0.236 4.236 9 C -0.250 4.250 10 C -0.106 4.106 11 O -0.083 6.083 12 C -0.054 4.054 13 C -0.098 4.098 14 H 0.070 0.930 15 C -0.183 4.183 16 C 0.019 3.981 17 C -0.563 4.563 18 H 0.072 0.928 19 C -0.197 4.197 20 N -0.569 5.569 21 Si 0.775 3.225 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.207 1.207 25 H 0.040 0.960 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.176 0.824 36 H 0.257 0.743 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.021 0.979 43 H -0.011 1.011 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.454 5.833 11.904 16.282 hybrid contribution -0.551 -0.460 -0.963 1.201 sum 8.903 5.373 10.941 15.094 Atomic orbital electron populations 1.22629 0.81068 1.02401 0.99510 1.87989 1.19843 1.28591 1.95266 1.22664 0.93872 0.84687 0.99917 1.22198 0.94245 0.98710 0.91736 1.61634 1.24817 1.36711 1.03433 1.20489 0.90150 0.90817 0.97121 1.22349 1.04768 0.97093 0.81528 1.21725 1.07441 0.93737 1.00710 1.22080 1.08513 1.01759 0.92682 1.24658 1.04987 0.79905 1.01025 1.83952 1.70051 1.31409 1.22859 1.22155 1.00580 0.92790 0.89900 1.21099 0.98628 0.96488 0.93542 0.93034 1.21616 1.00677 0.98196 0.97853 1.18737 0.91161 0.93266 0.94913 1.21766 1.04681 1.22934 1.06910 0.92796 1.25831 0.95920 0.98708 0.99232 1.70143 1.10110 1.40005 1.36592 0.85645 0.78153 0.78561 0.80157 1.18725 1.21085 1.20707 0.95970 0.90746 0.91952 0.91027 0.94389 0.90745 0.90583 0.88183 0.91259 0.85441 0.82368 0.74279 0.92474 0.91691 0.94129 0.93896 0.91387 0.97861 1.01056 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 11.01 113.37 1.25 2.65 16 2 O -0.40 -15.69 10.60 -148.98 -1.58 -17.27 16 3 C 0.07 2.01 6.11 71.98 0.44 2.45 16 4 C 0.06 1.67 5.19 86.30 0.45 2.12 16 5 N -0.54 -18.22 3.56 -900.82 -3.21 -21.43 16 6 C 0.14 4.25 5.31 85.56 0.45 4.70 16 7 C -0.01 -0.24 6.14 24.83 0.15 -0.09 16 8 C -0.22 -7.74 10.81 22.19 0.24 -7.50 16 9 C -0.23 -6.85 10.91 22.19 0.24 -6.61 16 10 C -0.04 -0.97 12.09 66.97 0.81 -0.16 16 11 O -0.19 -5.51 9.78 -2.43 -0.02 -5.53 16 12 C 0.07 2.37 4.19 86.30 0.36 2.73 16 13 C -0.08 -3.17 2.39 -10.79 -0.03 -3.19 16 14 H 0.05 2.10 6.69 -2.39 -0.02 2.09 16 15 C -0.13 -4.50 8.91 71.98 0.64 -3.86 16 16 C 0.06 3.02 4.39 29.85 0.13 3.15 16 17 C -0.52 -30.37 8.47 25.60 0.22 -30.15 16 18 H 0.05 3.02 7.06 -2.91 -0.02 2.99 16 19 C 0.00 0.01 5.46 84.65 0.46 0.47 16 20 N -0.93 -58.34 13.29 21.44 0.28 -58.06 16 21 Si 0.95 46.04 29.54 68.60 2.03 48.06 16 22 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.23 6.73 -2.39 -0.02 1.22 16 30 H 0.07 2.20 6.45 -2.39 -0.02 2.19 16 31 H 0.08 1.67 7.99 -2.39 -0.02 1.65 16 32 H 0.10 3.07 6.52 -2.39 -0.02 3.06 16 33 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 34 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.24 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.06 1.48 7.99 -2.39 -0.02 1.46 16 38 H 0.06 2.17 6.49 -2.39 -0.02 2.16 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.04 1.67 7.11 -2.39 -0.02 1.65 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 42 H 0.00 0.18 7.61 -2.39 -0.02 0.16 16 43 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 44 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -73.29 357.65 4.27 -69.02 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.95 Total: 18.48 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 5.82 Total: -33.28 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -2.93 Total: -79.48 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.60 Total: -22.80 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.29 4.27 -69.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590593854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.090 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds