Wall clock time and date at job start Tue Mar 31 2020 05:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99959 * 2 1 4 4 C 1.53005 * 109.46979 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46753 * 64.62751 * 4 3 2 6 6 C 1.46902 * 110.99642 * 72.23650 * 5 4 3 7 7 C 1.50699 * 109.47146 * 62.23952 * 6 5 4 8 8 C 1.34518 * 125.78828 * 95.36846 * 7 6 5 9 9 C 1.41378 * 106.84256 * 180.02562 * 8 7 6 10 10 C 1.34512 * 106.84040 * 359.97438 * 9 8 7 11 11 O 1.34304 * 125.79113 * 275.05534 * 7 6 5 12 12 C 1.46902 * 110.99859 * 196.18815 * 5 4 3 13 13 C 1.52997 * 109.46961 * 165.80523 * 12 5 4 14 14 H 1.08994 * 109.47139 * 54.56683 * 13 12 5 15 15 C 1.53006 * 109.46951 * 174.56358 * 13 12 5 16 16 C 1.52998 * 109.47186 * 294.56488 * 13 12 5 17 17 C 1.50696 * 109.47293 * 175.00455 * 16 13 12 18 18 H 1.08003 * 119.99656 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99954 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00336 * 359.71698 * 19 17 16 21 21 Si 1.86803 * 119.99843 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47145 * 179.72335 * 21 19 17 23 23 H 1.48507 * 109.46955 * 299.72336 * 21 19 17 24 24 H 1.48499 * 109.47220 * 59.72278 * 21 19 17 25 25 H 1.08996 * 109.47230 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46709 * 299.99526 * 1 2 3 27 27 H 1.09005 * 109.46925 * 59.99410 * 1 2 3 28 28 H 1.09003 * 109.46925 * 60.00553 * 3 2 1 29 29 H 1.08991 * 109.47800 * 300.00375 * 3 2 1 30 30 H 1.09001 * 109.47206 * 304.62888 * 4 3 2 31 31 H 1.08999 * 109.46777 * 184.63024 * 4 3 2 32 32 H 1.08997 * 109.46984 * 182.23953 * 6 5 4 33 33 H 1.09003 * 109.47367 * 302.24053 * 6 5 4 34 34 H 1.07999 * 126.57783 * 0.02782 * 8 7 6 35 35 H 1.07996 * 126.58508 * 179.97438 * 9 8 7 36 36 H 1.08001 * 125.79272 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.46881 * 45.80339 * 12 5 4 38 38 H 1.09001 * 109.46776 * 285.80483 * 12 5 4 39 39 H 1.08999 * 109.47083 * 295.80989 * 15 13 12 40 40 H 1.09003 * 109.46879 * 55.80794 * 15 13 12 41 41 H 1.08997 * 109.46787 * 175.80405 * 15 13 12 42 42 H 1.08996 * 109.46787 * 54.99921 * 16 13 12 43 43 H 1.09003 * 109.47229 * 295.00257 * 16 13 12 44 44 H 0.97003 * 119.99642 * 0.28153 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9772 0.5541 -1.2505 6 6 3.8310 1.4761 -2.3848 7 6 4.7087 2.6818 -2.1685 8 6 5.9507 2.8485 -2.6574 9 6 6.4001 4.1128 -2.2118 10 6 5.4055 4.6433 -1.4778 11 8 4.3813 3.7747 -1.4598 12 6 5.3607 0.0733 -1.1379 13 6 5.6678 -0.8735 -2.2998 14 1 5.4507 -0.3730 -3.2434 15 6 7.1457 -1.2676 -2.2597 16 6 4.8017 -2.1288 -2.1773 17 6 5.0136 -3.0051 -3.3848 18 1 5.6973 -2.6972 -4.1621 19 6 4.3339 -4.1994 -3.4978 20 7 3.5048 -4.5764 -2.5491 21 14 4.5960 -5.2853 -4.9950 22 1 3.7602 -6.5065 -4.8731 23 1 4.2091 -4.5408 -6.2203 24 1 6.0273 -5.6716 -5.0818 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8900 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8465 -0.8898 30 1 3.8513 0.5739 0.8465 31 1 3.9785 2.1771 0.0836 32 1 4.1275 0.9710 -3.3041 33 1 2.7910 1.7931 -2.4636 34 1 6.4994 2.1505 -3.2723 35 1 7.3579 4.5658 -2.4206 36 1 5.4253 5.6065 -0.9896 37 1 5.4852 -0.4575 -0.1940 38 1 6.0440 0.9219 -1.1703 39 1 7.7620 -0.3832 -2.4214 40 1 7.3799 -1.7008 -1.2873 41 1 7.3478 -1.9994 -3.0417 42 1 3.7521 -1.8415 -2.1165 43 1 5.0812 -2.6767 -1.2773 44 1 3.3684 -4.0124 -1.7718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590593855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:22 Heat of formation + Delta-G solvation = -36.824954 kcal Electronic energy + Delta-G solvation = -23215.580054 eV Core-core repulsion = 19941.741906 eV Total energy + Delta-G solvation = -3273.838149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.60258 -38.48923 -37.08979 -34.56933 -33.00188 -32.08674 -30.72339 -28.98196 -26.63116 -26.19512 -26.11038 -24.10020 -22.52210 -21.68451 -21.46638 -20.13398 -18.96308 -17.19416 -16.76758 -16.49783 -16.19552 -15.98558 -15.06208 -14.79135 -14.52327 -14.23773 -13.66424 -13.55086 -13.33893 -12.87544 -12.78404 -12.68043 -12.48882 -12.03943 -11.75850 -11.54303 -11.44728 -11.35298 -11.24834 -10.91149 -10.82346 -10.61863 -10.12475 -9.97244 -9.87828 -9.70109 -9.42664 -9.25324 -8.51245 -8.27710 -8.12607 -7.96518 -6.13825 -3.80575 1.72681 2.63368 3.02101 3.52891 3.55282 3.73656 4.01083 4.17166 4.69634 4.71987 5.01537 5.05214 5.14650 5.24681 5.34222 5.44356 5.51019 5.53378 5.60745 5.63041 5.69270 5.79607 5.84195 5.89073 5.94038 5.99604 6.01087 6.07295 6.15853 6.24513 6.34724 6.48634 6.51568 6.92028 6.99754 7.14319 7.22491 7.28550 7.43356 7.48581 7.76716 7.96004 8.46902 8.71049 9.12873 9.90696 11.27045 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.005543 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.927235 B = 5049.857048 C = 6496.967450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.070 3.930 4 C 0.050 3.950 5 N -0.499 5.499 6 C 0.127 3.873 7 C -0.038 4.038 8 C -0.201 4.201 9 C -0.212 4.212 10 C -0.054 4.054 11 O -0.177 6.177 12 C 0.055 3.945 13 C -0.073 4.073 14 H 0.055 0.945 15 C -0.133 4.133 16 C 0.022 3.978 17 C -0.595 4.595 18 H 0.044 0.956 19 C 0.013 3.987 20 N -0.917 5.917 21 Si 1.063 2.937 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.291 1.291 25 H 0.086 0.914 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.197 0.803 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.028 0.972 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.028 0.972 43 H -0.002 1.002 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 18.200 4.382 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.008 4.008 4 C -0.078 4.078 5 N -0.220 5.220 6 C -0.001 4.001 7 C -0.090 4.090 8 C -0.222 4.222 9 C -0.232 4.232 10 C -0.122 4.122 11 O -0.073 6.073 12 C -0.072 4.072 13 C -0.092 4.092 14 H 0.074 0.926 15 C -0.191 4.191 16 C -0.015 4.015 17 C -0.633 4.633 18 H 0.062 0.938 19 C -0.190 4.190 20 N -0.554 5.554 21 Si 0.893 3.107 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.218 1.218 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.214 0.786 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.017 0.983 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.625 16.188 3.764 16.632 hybrid contribution 1.154 2.576 0.766 2.925 sum 0.529 18.765 4.529 19.311 Atomic orbital electron populations 1.22707 0.81982 1.02761 0.99023 1.88108 1.18611 1.26648 1.95084 1.22488 0.93585 0.85390 0.99296 1.22246 0.93820 0.98254 0.93443 1.62269 1.23480 1.33855 1.02383 1.21191 0.97720 0.84084 0.97124 1.23943 0.98002 0.89437 0.97630 1.21729 0.96126 0.98493 1.05812 1.21831 1.01087 0.96858 1.03396 1.23976 0.87235 0.96260 1.04758 1.84085 1.40044 1.24801 1.58373 1.22434 0.86524 0.97399 1.00889 1.21064 0.95470 0.97318 0.95356 0.92634 1.21710 0.95794 0.99722 1.01878 1.19165 0.95432 0.90759 0.96131 1.22091 1.28000 1.06819 1.06433 0.93806 1.25682 0.93957 0.97085 1.02288 1.70721 1.34699 1.40333 1.09627 0.83637 0.75816 0.76218 0.75073 1.21003 1.21724 1.21764 0.89596 0.94918 0.94482 0.93688 0.93540 0.90048 0.92989 0.86802 0.89540 0.83438 0.83789 0.78608 0.91397 0.95089 0.95252 0.93906 0.91466 0.95409 0.98347 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.17 10.64 -35.23 -0.38 -6.54 16 3 C 0.07 0.97 6.09 37.16 0.23 1.19 16 4 C 0.05 0.74 5.23 -3.82 -0.02 0.72 16 5 N -0.50 -8.46 3.97 -236.06 -0.94 -9.39 16 6 C 0.13 1.93 5.60 -4.97 -0.03 1.91 16 7 C -0.04 -0.54 4.94 -35.62 -0.18 -0.71 16 8 C -0.20 -2.75 9.45 -39.70 -0.38 -3.13 16 9 C -0.21 -2.48 10.91 -39.71 -0.43 -2.92 16 10 C -0.05 -0.59 12.09 29.42 0.36 -0.24 16 11 O -0.18 -2.34 9.38 5.69 0.05 -2.29 16 12 C 0.05 0.97 4.18 -3.82 -0.02 0.95 16 13 C -0.07 -1.51 2.33 -90.62 -0.21 -1.72 16 14 H 0.06 1.15 6.46 -51.93 -0.34 0.81 16 15 C -0.13 -2.56 9.07 37.16 0.34 -2.23 16 16 C 0.02 0.58 3.71 -27.89 -0.10 0.47 16 17 C -0.59 -17.08 8.35 -34.44 -0.29 -17.37 16 18 H 0.04 1.23 7.07 -52.48 -0.37 0.86 16 19 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 20 N -0.92 -29.01 13.65 55.43 0.76 -28.25 16 21 Si 1.06 26.05 29.90 -169.99 -5.08 20.96 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.62 6.58 -51.93 -0.34 0.28 16 30 H 0.08 1.23 7.74 -51.93 -0.40 0.83 16 31 H 0.05 0.72 5.85 -51.93 -0.30 0.42 16 32 H 0.11 1.83 6.46 -51.93 -0.34 1.50 16 33 H 0.09 1.23 6.56 -51.93 -0.34 0.89 16 34 H 0.15 2.01 8.06 -52.49 -0.42 1.58 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.20 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.07 1.25 7.76 -51.93 -0.40 0.84 16 38 H 0.03 0.51 5.84 -51.93 -0.30 0.21 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.41 6.84 -51.93 -0.36 1.06 16 42 H 0.03 0.78 7.50 -51.93 -0.39 0.39 16 43 H 0.00 -0.05 8.00 -51.93 -0.42 -0.47 16 44 H 0.27 8.67 7.22 -40.82 -0.29 8.38 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -33.04 350.21 -7.22 -40.26 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.19 Total: 1.21 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 0.28 Total: -21.23 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.18 Total: -37.65 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.32 Total: -8.83 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.04 -7.22 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590593855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.436 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds