Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99959 * 2 1 4 4 C 1.53005 * 109.46979 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46753 * 64.62751 * 4 3 2 6 6 C 1.46902 * 110.99642 * 72.23650 * 5 4 3 7 7 C 1.50699 * 109.47146 * 62.23952 * 6 5 4 8 8 C 1.34518 * 125.78828 * 95.36846 * 7 6 5 9 9 C 1.41378 * 106.84256 * 180.02562 * 8 7 6 10 10 C 1.34512 * 106.84040 * 359.97438 * 9 8 7 11 11 O 1.34304 * 125.79113 * 275.05534 * 7 6 5 12 12 C 1.46902 * 110.99859 * 196.18815 * 5 4 3 13 13 C 1.52997 * 109.46961 * 165.80523 * 12 5 4 14 14 H 1.08994 * 109.47139 * 54.56683 * 13 12 5 15 15 C 1.53006 * 109.46951 * 174.56358 * 13 12 5 16 16 C 1.52998 * 109.47186 * 294.56488 * 13 12 5 17 17 C 1.50696 * 109.47293 * 175.00455 * 16 13 12 18 18 H 1.08003 * 119.99656 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99954 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00336 * 359.71698 * 19 17 16 21 21 Si 1.86803 * 119.99843 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47145 * 179.72335 * 21 19 17 23 23 H 1.48507 * 109.46955 * 299.72336 * 21 19 17 24 24 H 1.48499 * 109.47220 * 59.72278 * 21 19 17 25 25 H 1.08996 * 109.47230 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46709 * 299.99526 * 1 2 3 27 27 H 1.09005 * 109.46925 * 59.99410 * 1 2 3 28 28 H 1.09003 * 109.46925 * 60.00553 * 3 2 1 29 29 H 1.08991 * 109.47800 * 300.00375 * 3 2 1 30 30 H 1.09001 * 109.47206 * 304.62888 * 4 3 2 31 31 H 1.08999 * 109.46777 * 184.63024 * 4 3 2 32 32 H 1.08997 * 109.46984 * 182.23953 * 6 5 4 33 33 H 1.09003 * 109.47367 * 302.24053 * 6 5 4 34 34 H 1.07999 * 126.57783 * 0.02782 * 8 7 6 35 35 H 1.07996 * 126.58508 * 179.97438 * 9 8 7 36 36 H 1.08001 * 125.79272 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.46881 * 45.80339 * 12 5 4 38 38 H 1.09001 * 109.46776 * 285.80483 * 12 5 4 39 39 H 1.08999 * 109.47083 * 295.80989 * 15 13 12 40 40 H 1.09003 * 109.46879 * 55.80794 * 15 13 12 41 41 H 1.08997 * 109.46787 * 175.80405 * 15 13 12 42 42 H 1.08996 * 109.46787 * 54.99921 * 16 13 12 43 43 H 1.09003 * 109.47229 * 295.00257 * 16 13 12 44 44 H 0.97003 * 119.99642 * 0.28153 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9772 0.5541 -1.2505 6 6 3.8310 1.4761 -2.3848 7 6 4.7087 2.6818 -2.1685 8 6 5.9507 2.8485 -2.6574 9 6 6.4001 4.1128 -2.2118 10 6 5.4055 4.6433 -1.4778 11 8 4.3813 3.7747 -1.4598 12 6 5.3607 0.0733 -1.1379 13 6 5.6678 -0.8735 -2.2998 14 1 5.4507 -0.3730 -3.2434 15 6 7.1457 -1.2676 -2.2597 16 6 4.8017 -2.1288 -2.1773 17 6 5.0136 -3.0051 -3.3848 18 1 5.6973 -2.6972 -4.1621 19 6 4.3339 -4.1994 -3.4978 20 7 3.5048 -4.5764 -2.5491 21 14 4.5960 -5.2853 -4.9950 22 1 3.7602 -6.5065 -4.8731 23 1 4.2091 -4.5408 -6.2203 24 1 6.0273 -5.6716 -5.0818 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8900 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8465 -0.8898 30 1 3.8513 0.5739 0.8465 31 1 3.9785 2.1771 0.0836 32 1 4.1275 0.9710 -3.3041 33 1 2.7910 1.7931 -2.4636 34 1 6.4994 2.1505 -3.2723 35 1 7.3579 4.5658 -2.4206 36 1 5.4253 5.6065 -0.9896 37 1 5.4852 -0.4575 -0.1940 38 1 6.0440 0.9219 -1.1703 39 1 7.7620 -0.3832 -2.4214 40 1 7.3799 -1.7008 -1.2873 41 1 7.3478 -1.9994 -3.0417 42 1 3.7521 -1.8415 -2.1165 43 1 5.0812 -2.6767 -1.2773 44 1 3.3684 -4.0124 -1.7718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590593855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = -58.047858 kcal Electronic energy + Delta-G solvation = -23216.500348 eV Core-core repulsion = 19941.741906 eV Total energy + Delta-G solvation = -3274.758443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.56583 -39.76555 -38.37967 -36.34716 -34.16918 -33.93517 -31.77531 -30.21804 -28.55754 -27.52265 -27.20534 -25.62893 -24.45084 -22.71975 -22.49504 -21.35440 -20.51466 -18.79466 -18.13987 -17.77729 -17.43701 -17.05769 -16.27099 -16.03376 -15.75225 -15.57862 -15.40233 -15.22820 -14.93891 -14.16145 -13.93443 -13.75896 -13.58108 -13.49747 -13.30079 -12.97584 -12.89389 -12.85833 -12.59398 -12.55462 -12.46217 -12.09167 -11.93299 -11.61365 -11.52567 -11.13295 -10.81573 -10.54386 -10.46000 -10.39734 -9.48669 -9.24385 -8.53510 -6.21142 0.77421 1.54077 1.63533 1.69438 1.81756 2.08359 2.64162 2.89214 2.98372 3.30388 3.73190 3.93279 3.99218 4.13659 4.17121 4.22834 4.27057 4.34663 4.40772 4.48191 4.49120 4.53899 4.60258 4.69797 4.70043 4.80098 4.85131 4.86288 4.91440 4.91971 5.03003 5.14148 5.21053 5.34801 5.46244 5.58884 5.62831 5.76902 6.03006 6.06229 6.19109 6.24653 6.37035 6.39799 6.75559 7.60199 8.86479 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.005543 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.927235 B = 5049.857048 C = 6496.967450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.070 3.930 4 C 0.054 3.946 5 N -0.524 5.524 6 C 0.133 3.867 7 C -0.055 4.055 8 C -0.210 4.210 9 C -0.226 4.226 10 C -0.041 4.041 11 O -0.186 6.186 12 C 0.069 3.931 13 C -0.065 4.065 14 H 0.055 0.945 15 C -0.128 4.128 16 C 0.033 3.967 17 C -0.603 4.603 18 H 0.049 0.951 19 C -0.044 4.044 20 N -0.943 5.943 21 Si 1.113 2.887 22 H -0.287 1.287 23 H -0.270 1.270 24 H -0.270 1.270 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.143 0.857 35 H 0.166 0.834 36 H 0.239 0.761 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.046 0.954 42 H -0.001 1.001 43 H -0.032 1.032 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 20.426 3.978 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.006 4.006 4 C -0.074 4.074 5 N -0.246 5.246 6 C 0.005 3.995 7 C -0.106 4.106 8 C -0.230 4.230 9 C -0.245 4.245 10 C -0.108 4.108 11 O -0.082 6.082 12 C -0.058 4.058 13 C -0.084 4.084 14 H 0.073 0.927 15 C -0.186 4.186 16 C -0.004 4.004 17 C -0.641 4.641 18 H 0.067 0.933 19 C -0.240 4.240 20 N -0.581 5.581 21 Si 0.935 3.065 22 H -0.213 1.213 23 H -0.196 1.196 24 H -0.196 1.196 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.017 0.983 43 H -0.013 1.013 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.316 18.446 3.364 18.753 hybrid contribution 0.858 1.982 0.918 2.346 sum 1.174 20.428 4.282 20.905 Atomic orbital electron populations 1.22834 0.80355 1.02944 1.00676 1.88048 1.20682 1.28622 1.95417 1.22585 0.92722 0.84567 1.00751 1.22251 0.94688 0.98420 0.92000 1.62209 1.22882 1.35575 1.03890 1.20954 0.98364 0.84453 0.95742 1.23533 0.98032 0.89776 0.99282 1.21887 0.96044 0.99495 1.05618 1.22125 1.02442 0.96152 1.03733 1.24819 0.85913 0.96738 1.03356 1.84069 1.40998 1.24826 1.58300 1.22161 0.87845 0.97109 0.98707 1.20912 0.95396 0.95321 0.96763 0.92709 1.21632 0.95165 1.00695 1.01063 1.18978 0.94821 0.92648 0.93920 1.22501 1.27372 1.07117 1.07081 0.93309 1.27292 0.93194 0.99152 1.04380 1.70876 1.36696 1.40490 1.10086 0.82995 0.76817 0.74493 0.72174 1.21288 1.19569 1.19561 0.90276 0.92333 0.93647 0.90996 0.93067 0.91039 0.91622 0.88474 0.89029 0.83904 0.81618 0.74537 0.92558 0.93237 0.91715 0.94016 0.93507 0.98282 1.01336 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -13.95 10.64 -148.98 -1.59 -15.54 16 3 C 0.07 1.90 6.09 71.98 0.44 2.34 16 4 C 0.05 1.57 5.23 86.30 0.45 2.03 16 5 N -0.52 -18.02 3.97 -900.77 -3.57 -21.59 16 6 C 0.13 4.05 5.60 85.56 0.48 4.53 16 7 C -0.05 -1.47 4.94 24.83 0.12 -1.34 16 8 C -0.21 -5.38 9.45 22.19 0.21 -5.17 16 9 C -0.23 -4.59 10.91 22.19 0.24 -4.35 16 10 C -0.04 -0.74 12.09 66.97 0.81 0.07 16 11 O -0.19 -4.45 9.38 -2.55 -0.02 -4.47 16 12 C 0.07 2.46 4.18 86.30 0.36 2.82 16 13 C -0.07 -2.72 2.33 -10.79 -0.03 -2.74 16 14 H 0.05 2.29 6.46 -2.39 -0.02 2.28 16 15 C -0.13 -4.85 9.07 71.98 0.65 -4.20 16 16 C 0.03 1.81 3.71 29.85 0.11 1.92 16 17 C -0.60 -35.32 8.35 25.60 0.21 -35.10 16 18 H 0.05 2.76 7.07 -2.91 -0.02 2.74 16 19 C -0.04 -2.63 5.46 84.66 0.46 -2.17 16 20 N -0.94 -61.59 13.65 21.45 0.29 -61.30 16 21 Si 1.11 52.37 29.90 68.60 2.05 54.42 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.31 6.58 -2.39 -0.02 1.30 16 30 H 0.07 2.19 7.74 -2.39 -0.02 2.17 16 31 H 0.07 1.72 5.85 -2.39 -0.01 1.71 16 32 H 0.10 3.22 6.46 -2.39 -0.02 3.21 16 33 H 0.09 2.62 6.56 -2.39 -0.02 2.60 16 34 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.24 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.06 2.11 7.76 -2.39 -0.02 2.09 16 38 H 0.05 1.58 5.84 -2.39 -0.01 1.57 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.94 6.84 -2.39 -0.02 1.93 16 42 H 0.00 -0.07 7.50 -2.39 -0.02 -0.09 16 43 H -0.03 -1.89 8.00 -2.39 -0.02 -1.91 16 44 H 0.25 17.05 7.22 -92.71 -0.67 16.38 16 Total: -1.00 -73.35 350.21 4.00 -69.35 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.06 Total: 18.51 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 5.78 Total: -39.39 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.28 Total: -82.89 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -1.61 Total: -20.01 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 2.05 Total: 54.42 kcal Total: -73.35 4.00 -69.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590593855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.300 kcal (2) G-P(sol) polarization free energy of solvation -73.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds