Wall clock time and date at job start Tue Mar 31 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00136 * 2 1 4 4 C 1.53000 * 109.47332 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47329 * 64.99591 * 4 3 2 6 6 C 1.46503 * 119.99373 * 90.00331 * 5 4 3 7 7 C 1.50699 * 109.46825 * 269.99940 * 6 5 4 8 8 H 1.07999 * 120.00803 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00186 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00030 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 89.99863 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00044 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00037 * 11 9 7 15 15 C 1.34770 * 120.00642 * 270.00466 * 5 4 3 16 16 O 1.21286 * 119.99615 * 0.02562 * 15 5 4 17 17 C 1.50696 * 120.00499 * 179.97438 * 15 5 4 18 18 C 1.53002 * 109.47241 * 179.97438 * 17 15 5 19 19 H 1.09001 * 110.43258 * 52.46542 * 18 17 15 20 20 C 1.54885 * 110.48624 * 289.77740 * 18 17 15 21 21 C 1.54898 * 102.74875 * 203.37913 * 20 18 17 22 22 C 1.54269 * 104.19309 * 37.94327 * 21 20 18 23 23 H 1.08996 * 117.76176 * 116.74870 * 22 21 20 24 24 C 1.55468 * 118.30059 * 272.80460 * 22 21 20 25 25 C 1.53003 * 59.84120 * 93.29590 * 24 22 21 26 26 H 1.09000 * 119.29997 * 111.70714 * 25 24 22 27 27 H 1.09001 * 109.47252 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47045 * 299.99532 * 1 2 3 29 29 H 1.08998 * 109.47435 * 59.99688 * 1 2 3 30 30 H 1.09005 * 109.47230 * 60.00577 * 3 2 1 31 31 H 1.08999 * 109.47578 * 300.00063 * 3 2 1 32 32 H 1.09010 * 109.46897 * 305.00133 * 4 3 2 33 33 H 1.09003 * 109.47457 * 185.00327 * 4 3 2 34 34 H 1.09004 * 109.46958 * 150.00352 * 6 5 4 35 35 H 1.08997 * 109.47731 * 30.00028 * 6 5 4 36 36 H 0.96998 * 120.00124 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.47088 * 300.00425 * 17 15 5 38 38 H 1.09006 * 109.46626 * 60.00159 * 17 15 5 39 39 H 1.08995 * 110.75847 * 321.69109 * 20 18 17 40 40 H 1.08996 * 110.75913 * 85.06642 * 20 18 17 41 41 H 1.09000 * 110.48398 * 279.27103 * 21 20 18 42 42 H 1.08991 * 110.48656 * 156.62212 * 21 20 18 43 43 H 1.08996 * 118.06337 * 346.15572 * 24 22 21 44 44 H 1.09010 * 117.18148 * 200.81806 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2864 1.4006 -2.4147 7 6 3.0416 1.5937 -3.2419 8 1 2.1119 1.1393 -2.9328 9 6 3.0896 2.3504 -4.3934 10 7 2.0031 2.5194 -5.1151 11 14 4.6977 3.1359 -4.9286 12 1 5.4374 2.1977 -5.8107 13 1 5.5211 3.4430 -3.7315 14 1 4.4132 4.3913 -5.6690 15 6 4.0948 -0.7756 -1.3356 16 8 3.8371 -1.4679 -0.3737 17 6 4.5471 -1.4137 -2.6237 18 6 4.5981 -2.9329 -2.4499 19 1 3.6495 -3.3035 -2.0614 20 6 5.7644 -3.3325 -1.5123 21 6 6.0469 -4.7988 -1.9239 22 6 5.8588 -4.8048 -3.4551 23 1 6.7258 -5.0407 -4.0721 24 6 4.4307 -5.0433 -4.0214 25 6 4.9377 -3.6184 -3.7895 26 1 5.1314 -2.9749 -4.6477 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5681 0.8410 33 1 3.9786 2.1765 0.0890 34 1 5.0520 0.9135 -3.0187 35 1 4.6523 2.3703 -2.0772 36 1 2.0369 3.0515 -5.9254 37 1 3.8463 -1.1619 -3.4196 38 1 5.5394 -1.0445 -2.8831 39 1 6.6375 -2.7055 -1.6931 40 1 5.4571 -3.2768 -0.4681 41 1 5.3333 -5.4724 -1.4493 42 1 7.0678 -5.0781 -1.6638 43 1 3.6665 -5.4216 -3.3425 44 1 4.3552 -5.3883 -5.0527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590629631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:19 Heat of formation + Delta-G solvation = -62.182931 kcal Electronic energy + Delta-G solvation = -23325.339461 eV Core-core repulsion = 20050.401708 eV Total energy + Delta-G solvation = -3274.937753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.69409 -38.56953 -37.03275 -34.92475 -32.60535 -32.17579 -30.46449 -29.46079 -27.56826 -25.97861 -24.90654 -22.61897 -22.41379 -21.86531 -20.15428 -19.19553 -18.16672 -17.06808 -16.30853 -16.01632 -15.54643 -15.30294 -15.03674 -14.55248 -14.50757 -13.93110 -13.90513 -13.05411 -12.82457 -12.62391 -12.59104 -12.30389 -12.15272 -12.06632 -11.66378 -11.45209 -11.26997 -10.98797 -10.83269 -10.75831 -10.66194 -10.50720 -10.43861 -10.21614 -10.19669 -9.82653 -9.57055 -9.40386 -9.04071 -8.82111 -8.67710 -7.63007 -6.20381 -4.21020 3.17061 3.24948 3.26632 3.57381 3.79018 3.94999 4.26996 4.40730 4.70319 4.88948 5.00797 5.09877 5.32734 5.39358 5.53038 5.61332 5.65669 5.71448 5.74199 5.77570 5.83259 5.85734 5.90883 5.91288 5.98823 6.01480 6.05269 6.12101 6.16632 6.24743 6.35667 6.43094 6.46979 6.56669 6.58648 6.62749 6.70402 6.82790 7.42452 7.48094 7.79097 8.24132 8.48818 8.87547 9.15148 9.40328 10.92135 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.006650 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.238766 B = 4209.775380 C = 5556.907036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.369 6.369 3 C 0.042 3.958 4 C 0.127 3.873 5 N -0.594 5.594 6 C 0.208 3.792 7 C -0.536 4.536 8 H 0.081 0.919 9 C 0.075 3.925 10 N -0.892 5.892 11 Si 0.870 3.130 12 H -0.273 1.273 13 H -0.265 1.265 14 H -0.285 1.285 15 C 0.525 3.475 16 O -0.553 6.553 17 C -0.128 4.128 18 C -0.044 4.044 19 H 0.081 0.919 20 C -0.114 4.114 21 C -0.094 4.094 22 C -0.174 4.174 23 H 0.105 0.895 24 C -0.158 4.158 25 C -0.154 4.154 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.345 -7.613 5.474 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.004 3.996 5 N -0.326 5.326 6 C 0.086 3.914 7 C -0.574 4.574 8 H 0.099 0.901 9 C -0.128 4.128 10 N -0.530 5.530 11 Si 0.696 3.304 12 H -0.199 1.199 13 H -0.189 1.189 14 H -0.210 1.210 15 C 0.313 3.687 16 O -0.431 6.431 17 C -0.168 4.168 18 C -0.063 4.063 19 H 0.099 0.901 20 C -0.151 4.151 21 C -0.132 4.132 22 C -0.192 4.192 23 H 0.123 0.877 24 C -0.195 4.195 25 C -0.172 4.172 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.270 -8.019 5.813 11.219 hybrid contribution 0.409 1.042 -0.774 1.361 sum 5.679 -6.978 5.039 10.312 Atomic orbital electron populations 1.22629 0.82565 1.01817 0.99268 1.88048 1.18200 1.27254 1.95212 1.23052 0.94838 0.85332 1.00338 1.21255 0.92330 0.98137 0.87920 1.47801 1.65813 1.06200 1.12779 1.19809 0.97113 0.90387 0.84089 1.21445 0.96114 1.32576 1.07287 0.90141 1.24897 0.96097 0.95743 0.96089 1.69895 1.27746 1.39703 1.15668 0.86952 0.84413 0.79549 0.79442 1.19903 1.18945 1.21026 1.20330 0.76955 0.81881 0.89491 1.90587 1.51353 1.61970 1.39239 1.21656 1.03189 0.94467 0.97494 1.21317 0.99349 0.93384 0.92224 0.90053 1.22723 0.97411 0.94594 1.00371 1.21933 1.00938 0.97522 0.92773 1.23636 0.93570 1.05509 0.96497 0.87710 1.23403 0.95953 0.98801 1.01299 1.23352 1.04100 0.90276 0.99499 0.87277 0.90498 0.95183 0.94174 0.94242 0.91214 0.90404 0.89999 0.95254 0.95186 0.92468 0.87755 0.89939 0.92035 0.90329 0.91738 0.91806 0.89055 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 101.05 1.11 1.68 16 2 O -0.37 -7.50 9.49 -43.01 -0.41 -7.91 16 3 C 0.04 0.78 6.28 37.16 0.23 1.02 16 4 C 0.13 2.32 5.90 -4.04 -0.02 2.30 16 5 N -0.59 -12.22 2.44 -175.05 -0.43 -12.65 16 6 C 0.21 4.52 4.08 -5.19 -0.02 4.50 16 7 C -0.54 -13.83 9.26 -34.44 -0.32 -14.15 16 8 H 0.08 2.35 7.48 -52.49 -0.39 1.96 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 10 N -0.89 -25.64 13.96 55.43 0.77 -24.86 16 11 Si 0.87 19.60 27.47 -169.99 -4.67 14.93 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.52 10.83 7.11 -10.99 -0.08 10.75 16 16 O -0.55 -12.26 13.52 -2.22 -0.03 -12.29 16 17 C -0.13 -2.34 3.73 -27.88 -0.10 -2.45 16 18 C -0.04 -0.71 2.24 -88.96 -0.20 -0.91 16 19 H 0.08 1.47 7.89 -51.93 -0.41 1.06 16 20 C -0.11 -1.68 5.75 -24.74 -0.14 -1.82 16 21 C -0.09 -1.18 6.64 -25.07 -0.17 -1.35 16 22 C -0.17 -2.17 7.04 -88.19 -0.62 -2.79 16 23 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 24 C -0.16 -1.97 10.21 -25.42 -0.26 -2.23 16 25 C -0.15 -2.20 6.27 -89.50 -0.56 -2.76 16 26 H 0.11 1.56 8.05 -51.93 -0.42 1.14 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.46 6.95 -51.93 -0.36 1.10 16 32 H 0.08 1.41 7.42 -51.92 -0.39 1.03 16 33 H 0.08 1.29 7.89 -51.93 -0.41 0.88 16 34 H 0.03 0.62 5.87 -51.93 -0.30 0.32 16 35 H 0.03 0.64 6.95 -51.93 -0.36 0.28 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 37 H 0.10 2.10 8.00 -51.93 -0.42 1.68 16 38 H 0.08 1.39 7.28 -51.93 -0.38 1.02 16 39 H 0.06 0.88 7.96 -51.93 -0.41 0.47 16 40 H 0.08 1.28 7.29 -51.93 -0.38 0.90 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.09 1.04 8.14 -51.92 -0.42 0.61 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -29.94 349.26 -8.34 -38.29 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.60 Total: 5.55 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.25 Total: -6.32 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.35 Total: -37.51 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.44 Total: -20.20 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.67 Total: 14.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.94 -8.34 -38.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.896 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds