Wall clock time and date at job start Tue Mar 31 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.51242 * 2 1 4 4 C 1.53279 * 109.51376 * 239.90040 * 2 1 3 5 5 N 1.47154 * 108.49500 * 187.39744 * 4 2 1 6 6 C 1.34770 * 121.02564 * 230.85632 * 5 4 2 7 7 O 1.21286 * 120.00222 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99761 * 0.02562 * 6 5 4 9 9 C 1.53005 * 109.47304 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47088 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00496 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99572 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 C 1.47234 * 117.95306 * 51.12971 * 5 4 2 19 19 C 1.53389 * 108.11910 * 309.72053 * 18 5 4 20 20 C 1.53940 * 109.65458 * 172.72752 * 19 18 5 21 21 C 1.54962 * 104.12996 * 95.88894 * 20 19 18 22 22 C 1.54915 * 102.78789 * 37.66771 * 21 20 19 23 23 C 1.53581 * 110.04251 * 290.06521 * 19 18 5 24 24 O 1.42549 * 110.14678 * 51.62442 * 19 18 5 25 25 H 1.08998 * 109.47582 * 180.09632 * 1 2 3 26 26 H 1.09001 * 109.47019 * 300.09647 * 1 2 3 27 27 H 1.09000 * 109.46777 * 60.09942 * 1 2 3 28 28 H 1.09001 * 109.63395 * 67.69515 * 4 2 1 29 29 H 1.08999 * 109.79559 * 307.19738 * 4 2 1 30 30 H 1.09002 * 109.47152 * 59.99841 * 8 6 5 31 31 H 1.09001 * 109.47438 * 299.99667 * 8 6 5 32 32 H 1.09002 * 109.46935 * 59.99966 * 9 8 6 33 33 H 1.08998 * 109.47061 * 300.00759 * 9 8 6 34 34 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 35 35 H 1.08997 * 109.68727 * 69.49666 * 18 5 4 36 36 H 1.09004 * 109.68808 * 190.06540 * 18 5 4 37 37 H 1.09006 * 110.49919 * 214.55140 * 20 19 18 38 38 H 1.08999 * 110.49906 * 337.22468 * 20 19 18 39 39 H 1.09004 * 110.74691 * 279.34116 * 21 20 19 40 40 H 1.08997 * 110.90312 * 156.06657 * 21 20 19 41 41 H 1.09000 * 110.48157 * 203.54833 * 22 21 20 42 42 H 1.08996 * 110.59834 * 80.96359 * 22 21 20 43 43 H 1.08999 * 110.06192 * 0.11554 * 23 19 18 44 44 H 1.09000 * 110.05384 * 121.61419 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2499 5 7 3.5023 -0.8688 -1.1405 6 6 4.3151 -0.4886 -2.1461 7 8 5.5162 -0.6163 -2.0363 8 6 3.7316 0.0953 -3.4069 9 6 4.8612 0.4407 -4.3794 10 6 4.2776 1.0251 -5.6399 11 1 3.2082 1.1392 -5.7375 12 6 5.1092 1.4142 -6.6685 13 7 6.4115 1.2749 -6.5499 14 14 4.3860 2.1393 -8.2308 15 1 3.6254 3.3709 -7.8990 16 1 3.4753 1.1497 -8.8605 17 1 5.4824 2.4745 -9.1747 18 6 4.0478 -1.4470 0.0988 19 6 3.4287 -0.6997 1.2867 20 6 3.8323 -1.3918 2.6011 21 6 5.0641 -0.5881 3.0891 22 6 4.6962 0.8678 2.7087 23 6 3.9764 0.7338 1.3499 24 8 2.0085 -0.6764 1.1659 25 1 -0.3634 -1.0276 0.0017 26 1 -0.3633 0.5153 0.8891 27 1 -0.3633 0.5123 -0.8909 28 1 1.7970 -0.1412 -2.1375 29 1 1.5808 -1.7097 -1.3204 30 1 3.1727 0.9990 -3.1640 31 1 3.0637 -0.6318 -3.8688 32 1 5.4204 -0.4628 -4.6223 33 1 5.5288 1.1679 -3.9172 34 1 6.7871 0.8987 -5.7385 35 1 3.7926 -2.5053 0.1536 36 1 5.1313 -1.3288 0.1133 37 1 3.0234 -1.3301 3.3291 38 1 4.1032 -2.4315 2.4174 39 1 5.9656 -0.9079 2.5664 40 1 5.1896 -0.6856 4.1675 41 1 5.5962 1.4741 2.6055 42 1 4.0285 1.3016 3.4530 43 1 4.6813 0.9010 0.5355 44 1 3.1571 1.4500 1.2888 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592738145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:47 Heat of formation + Delta-G solvation = -103.675887 kcal Electronic energy + Delta-G solvation = -23295.958014 eV Core-core repulsion = 20019.220991 eV Total energy + Delta-G solvation = -3276.737022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81865 -38.70152 -36.75973 -34.58931 -33.85224 -32.42209 -30.97070 -29.13924 -28.74460 -26.48435 -25.88664 -24.19108 -22.24961 -21.71353 -20.69151 -19.48838 -18.70753 -17.23188 -17.04542 -16.23974 -16.06305 -15.84725 -15.11465 -14.98131 -14.26281 -13.90298 -13.70742 -13.59411 -13.47331 -13.20543 -12.77413 -12.57991 -12.32582 -12.15279 -12.02396 -11.67006 -11.56461 -11.46723 -11.31329 -11.24514 -11.04894 -10.83911 -10.71573 -10.57412 -10.14650 -10.13995 -10.01120 -9.90481 -9.28756 -8.54809 -8.39913 -8.29084 -6.33002 -4.03333 3.04405 3.07684 3.43874 3.44584 3.46667 3.65585 4.33271 4.37111 4.52758 4.56556 4.67099 4.80148 4.90901 4.96137 5.13475 5.20960 5.24734 5.29828 5.38143 5.44465 5.44735 5.47171 5.55050 5.62067 5.66399 5.68208 5.77344 5.82309 5.85985 5.91061 5.94278 6.03542 6.05740 6.08283 6.15140 6.53139 6.71333 7.13445 7.49486 7.54647 7.59321 8.17580 8.47707 8.58258 8.90525 9.70438 11.07841 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.004082 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.194114 B = 6857.349509 C = 7508.978394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.080 3.920 5 N -0.626 5.626 6 C 0.514 3.486 7 O -0.535 6.535 8 C -0.121 4.121 9 C 0.025 3.975 10 C -0.609 4.609 11 H 0.049 0.951 12 C 0.016 3.984 13 N -0.910 5.910 14 Si 1.070 2.930 15 H -0.288 1.288 16 H -0.288 1.288 17 H -0.282 1.282 18 C 0.093 3.907 19 C 0.104 3.896 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.148 4.148 24 O -0.368 6.368 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.014 0.986 33 H 0.014 0.986 34 H 0.272 0.728 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 -3.796 19.516 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.043 4.043 5 N -0.362 5.362 6 C 0.304 3.696 7 O -0.410 6.410 8 C -0.161 4.161 9 C -0.013 4.013 10 C -0.647 4.647 11 H 0.067 0.933 12 C -0.189 4.189 13 N -0.546 5.546 14 Si 0.898 3.102 15 H -0.215 1.215 16 H -0.215 1.215 17 H -0.207 1.207 18 C -0.030 4.030 19 C 0.064 3.936 20 C -0.144 4.144 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.186 4.186 24 O -0.287 6.287 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.932 -3.327 18.180 20.981 hybrid contribution -0.421 -0.560 1.304 1.481 sum -10.353 -3.887 19.484 22.404 Atomic orbital electron populations 1.21723 0.92245 1.03156 1.02855 1.22509 0.95285 0.95946 0.85122 0.91557 1.22430 0.80618 1.01771 0.99523 1.48343 1.06626 1.64389 1.16834 1.21594 0.86737 0.76497 0.84728 1.90650 1.15116 1.54459 1.80802 1.21743 1.01966 1.00247 0.92129 1.19020 0.92558 0.96732 0.92943 1.22013 0.94712 1.46101 1.01895 0.93287 1.25847 0.94970 0.95710 1.02342 1.70737 1.11575 1.41895 1.30359 0.83541 0.75160 0.76147 0.75352 1.21470 1.21455 1.20746 1.22306 1.00702 0.96728 0.83254 1.22363 0.81092 0.94995 0.95126 1.22282 0.98159 0.99056 0.94952 1.22517 0.97639 0.95039 1.00987 1.22308 1.00116 0.96921 0.96442 1.22728 1.00787 0.96385 0.98668 1.87905 1.20330 1.77426 1.43050 0.91608 0.91583 0.90591 0.88272 0.90853 0.90166 0.90073 0.96742 0.96773 0.91756 0.91412 0.88240 0.90058 0.90698 0.91031 0.91015 0.91431 0.91526 0.90762 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.57 37.15 0.36 -0.84 16 2 C 0.07 0.77 3.08 -26.59 -0.08 0.69 16 3 H 0.07 0.77 6.35 -51.93 -0.33 0.44 16 4 C 0.08 0.99 5.82 -3.54 -0.02 0.97 16 5 N -0.63 -9.73 2.82 -172.16 -0.49 -10.21 16 6 C 0.51 10.24 7.71 -10.99 -0.08 10.16 16 7 O -0.53 -12.68 15.46 5.55 0.09 -12.60 16 8 C -0.12 -2.52 4.01 -27.88 -0.11 -2.63 16 9 C 0.02 0.68 3.57 -27.88 -0.10 0.58 16 10 C -0.61 -17.54 9.11 -34.44 -0.31 -17.85 16 11 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 12 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 13 N -0.91 -28.85 13.65 55.43 0.76 -28.09 16 14 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 C 0.09 1.29 4.99 -3.44 -0.02 1.28 16 19 C 0.10 1.24 0.97 -89.63 -0.09 1.15 16 20 C -0.11 -1.03 6.09 -25.21 -0.15 -1.18 16 21 C -0.12 -1.11 6.91 -24.68 -0.17 -1.28 16 22 C -0.12 -1.19 6.84 -25.01 -0.17 -1.36 16 23 C -0.15 -1.80 5.49 -25.72 -0.14 -1.94 16 24 O -0.37 -4.47 9.82 -35.23 -0.35 -4.82 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 1.18 6.05 -51.93 -0.31 0.86 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.54 7.66 -51.93 -0.40 1.14 16 31 H 0.08 1.57 8.01 -51.93 -0.42 1.15 16 32 H 0.01 0.42 7.96 -51.93 -0.41 0.01 16 33 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 34 H 0.27 8.77 7.22 -40.82 -0.29 8.47 16 35 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 36 H 0.10 1.53 7.05 -51.93 -0.37 1.17 16 37 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 38 H 0.07 0.66 7.74 -51.93 -0.40 0.26 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.09 7.62 -51.93 -0.40 0.69 16 44 H 0.07 0.87 6.42 -51.93 -0.33 0.53 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -34.04 341.62 -8.62 -42.65 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.50 Total: -0.52 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.19 Total: -11.91 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.27 Total: -38.31 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.26 Total: -17.41 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.04 -8.62 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592738145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.023 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds