Wall clock time and date at job start Tue Mar 31 2020 05:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.54860 * 2 1 4 4 C 1.53278 * 109.51349 * 120.12554 * 2 1 3 5 5 N 1.47155 * 108.47868 * 172.57205 * 4 2 1 6 6 C 1.34783 * 121.02219 * 129.10625 * 5 4 2 7 7 O 1.21281 * 119.99930 * 180.02562 * 6 5 4 8 8 C 1.50704 * 119.99811 * 0.02562 * 6 5 4 9 9 C 1.53004 * 109.46742 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.46742 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99772 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99837 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00003 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99754 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47269 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46841 * 120.00422 * 14 12 10 17 17 H 1.48497 * 109.46771 * 239.99995 * 14 12 10 18 18 C 1.47227 * 117.95498 * 309.12623 * 5 4 2 19 19 C 1.52934 * 108.37617 * 49.94224 * 18 5 4 20 20 C 1.53577 * 109.89534 * 70.20480 * 19 18 5 21 21 C 1.54346 * 106.52181 * 119.08879 * 20 19 18 22 22 C 1.54997 * 104.16512 * 336.48387 * 21 20 19 23 23 C 1.53944 * 109.71791 * 187.49251 * 19 18 5 24 24 O 1.42544 * 110.22737 * 308.67895 * 19 18 5 25 25 H 1.09007 * 109.46888 * 299.87017 * 1 2 3 26 26 H 1.08996 * 109.47639 * 59.87048 * 1 2 3 27 27 H 1.09003 * 109.46878 * 179.87790 * 1 2 3 28 28 H 1.09003 * 109.63523 * 52.87865 * 4 2 1 29 29 H 1.09004 * 109.63541 * 292.26904 * 4 2 1 30 30 H 1.08995 * 109.46641 * 299.99901 * 8 6 5 31 31 H 1.09001 * 109.46879 * 60.00080 * 8 6 5 32 32 H 1.09004 * 109.47006 * 299.99770 * 9 8 6 33 33 H 1.09000 * 109.46902 * 60.00157 * 9 8 6 34 34 H 0.96994 * 119.99705 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.68397 * 290.21672 * 18 5 4 36 36 H 1.09004 * 109.71426 * 169.68214 * 18 5 4 37 37 H 1.09002 * 110.05695 * 238.37042 * 20 19 18 38 38 H 1.09000 * 110.05755 * 359.81149 * 20 19 18 39 39 H 1.09001 * 110.48822 * 95.13338 * 21 20 19 40 40 H 1.09001 * 110.48561 * 217.77068 * 21 20 19 41 41 H 1.08999 * 110.71129 * 279.39395 * 22 21 20 42 42 H 1.08996 * 110.76171 * 156.05926 * 22 21 20 43 43 H 1.08999 * 110.49975 * 22.93092 * 23 19 18 44 44 H 1.09001 * 110.50431 * 145.47487 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0420 -0.7251 1.2496 5 7 3.5023 -0.8698 1.1394 6 6 4.3158 -0.4894 2.1445 7 8 5.5168 -0.6166 2.0337 8 6 3.7329 0.0940 3.4059 9 6 4.8632 0.4397 4.3775 10 6 4.2803 1.0225 5.6391 11 1 3.2107 1.1346 5.7382 12 6 5.1125 1.4115 6.6673 13 7 6.4149 1.2745 6.5468 14 14 4.3899 2.1332 8.2314 15 1 2.9101 2.1801 8.1174 16 1 4.7702 1.2850 9.3896 17 1 4.9153 3.5078 8.4310 18 6 4.0473 -1.4424 -0.1026 19 6 3.4277 -0.7009 -1.2879 20 6 3.9767 0.7320 -1.3527 21 6 4.6968 0.8651 -2.7114 22 6 5.0621 -0.5925 -3.0914 23 6 3.8297 -1.3945 -2.6021 24 8 2.0077 -0.6764 -1.1662 25 1 -0.3633 0.5119 0.8912 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3633 -1.0277 -0.0022 28 1 1.5804 -1.7103 1.3164 29 1 1.7976 -0.1419 2.1375 30 1 3.1735 0.9975 3.1635 31 1 3.0657 -0.6336 3.8681 32 1 5.4230 -0.4637 4.6198 33 1 5.5300 1.1673 3.9149 34 1 7.0003 1.5485 7.2700 35 1 3.7958 -2.5014 -0.1599 36 1 5.1305 -1.3210 -0.1191 37 1 3.1580 1.4491 -1.2918 38 1 4.6814 0.8995 -0.5382 39 1 4.0289 1.2974 -3.4565 40 1 5.5974 1.4704 -2.6081 41 1 5.9635 -0.9128 -2.5689 42 1 5.1839 -0.6916 -4.1700 43 1 4.0996 -2.4344 -2.4179 44 1 3.0196 -1.3344 -3.3289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592738147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:50 Heat of formation + Delta-G solvation = -99.306827 kcal Electronic energy + Delta-G solvation = -23256.347754 eV Core-core repulsion = 19979.800188 eV Total energy + Delta-G solvation = -3276.547566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76954 -38.60665 -36.71066 -34.50435 -33.52836 -32.37295 -31.05216 -29.11163 -28.75101 -26.42075 -26.13831 -24.39967 -22.20102 -21.44422 -20.64966 -19.39983 -18.58839 -17.09417 -16.98595 -16.05985 -15.96559 -15.63912 -15.05043 -14.90547 -14.42196 -14.14556 -13.78700 -13.52908 -13.32110 -13.07493 -12.68326 -12.44623 -12.26166 -12.14369 -11.99192 -11.64896 -11.50184 -11.28033 -11.21978 -11.10291 -11.00423 -10.95902 -10.67223 -10.58679 -10.51819 -9.99160 -9.95037 -9.63740 -9.19229 -9.00572 -8.36515 -8.29162 -5.97503 -4.02031 3.12634 3.17753 3.31499 3.38735 3.41860 3.49190 4.37638 4.41798 4.45736 4.59232 4.72233 4.86016 4.96271 5.01187 5.18566 5.27185 5.30598 5.34479 5.37601 5.42591 5.48774 5.53026 5.59974 5.66797 5.70977 5.72237 5.82802 5.87539 5.90760 5.95446 5.98882 6.12595 6.16216 6.18293 6.19692 6.61949 6.86372 7.18428 7.69078 7.72924 7.83918 8.05273 8.36455 8.69273 9.06366 9.61693 11.13515 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.004065 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.998131 B = 6886.673233 C = 7538.922938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.067 0.933 4 C 0.081 3.919 5 N -0.627 5.627 6 C 0.514 3.486 7 O -0.532 6.532 8 C -0.128 4.128 9 C 0.037 3.963 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.889 5.889 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.093 3.907 19 C 0.104 3.896 20 C -0.148 4.148 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.107 4.107 24 O -0.368 6.368 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.387 -3.721 -19.240 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.043 4.043 5 N -0.363 5.363 6 C 0.305 3.695 7 O -0.407 6.407 8 C -0.168 4.168 9 C 0.000 4.000 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.030 4.030 19 C 0.064 3.936 20 C -0.186 4.186 21 C -0.158 4.158 22 C -0.162 4.162 23 C -0.145 4.145 24 O -0.288 6.288 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.662 -3.840 -19.296 21.918 hybrid contribution -0.264 0.496 1.151 1.281 sum -9.925 -3.344 -18.144 20.950 Atomic orbital electron populations 1.21724 0.92326 1.03113 1.02807 1.22519 0.95227 0.95976 0.85198 0.91557 1.22419 0.80730 1.01677 0.99460 1.48368 1.06565 1.64692 1.16711 1.21616 0.86735 0.76475 0.84711 1.90659 1.15085 1.54205 1.80709 1.21888 1.02392 1.00089 0.92416 1.18913 0.91775 0.97609 0.91742 1.21246 0.93100 1.41705 1.00433 0.92565 1.25024 0.94808 0.95891 0.98624 1.70009 1.02564 1.47501 1.32722 0.86539 0.79222 0.78827 0.83407 1.19734 1.20999 1.21002 1.22193 1.00720 0.96770 0.83308 1.22271 0.81104 0.95033 0.95168 1.22735 1.00792 0.96409 0.98665 1.22323 1.00105 0.96896 0.96461 1.22534 0.97657 0.95063 1.00928 1.22282 0.98141 0.99054 0.94979 1.87898 1.20361 1.77455 1.43061 0.90608 0.91646 0.91641 0.90938 0.88209 0.90339 0.90239 0.95821 0.95845 0.92993 0.91535 0.88229 0.91017 0.90674 0.91585 0.91407 0.90989 0.91069 0.90726 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.57 37.16 0.36 -0.85 16 2 C 0.07 0.77 3.08 -26.59 -0.08 0.68 16 3 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 4 C 0.08 0.99 5.82 -3.54 -0.02 0.97 16 5 N -0.63 -9.76 2.84 -172.44 -0.49 -10.25 16 6 C 0.51 10.25 7.71 -10.98 -0.08 10.16 16 7 O -0.53 -12.70 15.46 5.56 0.09 -12.62 16 8 C -0.13 -2.64 4.01 -27.88 -0.11 -2.75 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 14 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.09 1.30 4.96 -3.68 -0.02 1.28 16 19 C 0.10 1.25 0.97 -89.86 -0.09 1.16 16 20 C -0.15 -1.81 5.48 -25.73 -0.14 -1.95 16 21 C -0.12 -1.20 6.84 -24.97 -0.17 -1.37 16 22 C -0.12 -1.12 6.91 -24.64 -0.17 -1.29 16 23 C -0.11 -1.04 6.09 -25.20 -0.15 -1.19 16 24 O -0.37 -4.50 9.81 -35.23 -0.35 -4.85 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.17 6.05 -51.93 -0.31 0.86 16 30 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 31 H 0.08 1.50 8.01 -51.93 -0.42 1.09 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.07 0.87 8.01 -51.93 -0.42 0.45 16 36 H 0.10 1.55 7.04 -51.93 -0.37 1.18 16 37 H 0.07 0.87 6.42 -51.93 -0.33 0.53 16 38 H 0.07 1.11 7.61 -51.93 -0.40 0.71 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.67 7.73 -51.93 -0.40 0.27 16 44 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -33.44 342.88 -8.63 -42.07 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.55 Total: -1.51 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.21 Total: -7.90 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.25 Total: -36.96 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.26 Total: -17.47 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.44 -8.63 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592738147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.235 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds