Wall clock time and date at job start Tue Mar 31 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00399 * 2 1 4 4 C 1.52992 * 109.47268 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47110 * 65.00269 * 4 3 2 6 6 C 1.46492 * 119.99800 * 269.99838 * 5 4 3 7 7 C 1.50700 * 109.47397 * 269.99750 * 6 5 4 8 8 H 1.07996 * 119.99558 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00300 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00154 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 119.99853 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46687 * 90.00559 * 11 9 7 13 13 H 1.48501 * 109.46923 * 210.00368 * 11 9 7 14 14 H 1.48494 * 109.47358 * 330.00589 * 11 9 7 15 15 C 1.34773 * 119.99968 * 89.99382 * 5 4 3 16 16 O 1.21283 * 120.00360 * 359.73034 * 15 5 4 17 17 C 1.50706 * 120.00081 * 180.02562 * 15 5 4 18 18 C 1.53948 * 113.57779 * 278.97263 * 17 15 5 19 19 C 1.53067 * 86.72448 * 220.68751 * 18 17 15 20 20 C 1.52912 * 121.17612 * 150.58842 * 19 18 17 21 21 C 1.53941 * 86.78529 * 100.75049 * 20 19 18 22 22 C 1.52907 * 121.07065 * 259.12358 * 19 18 17 23 23 C 1.52909 * 88.06951 * 24.83519 * 19 18 17 24 24 H 1.08998 * 109.46475 * 60.00219 * 1 2 3 25 25 H 1.08999 * 109.46824 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46976 * 300.00513 * 1 2 3 27 27 H 1.09008 * 109.46794 * 59.99360 * 3 2 1 28 28 H 1.09006 * 109.46908 * 299.99926 * 3 2 1 29 29 H 1.08995 * 109.47699 * 304.99875 * 4 3 2 30 30 H 1.09002 * 109.47212 * 185.00045 * 4 3 2 31 31 H 1.08999 * 109.47479 * 30.00306 * 6 5 4 32 32 H 1.09006 * 109.47080 * 149.99714 * 6 5 4 33 33 H 0.97001 * 120.00238 * 179.97438 * 10 9 7 34 34 H 1.08997 * 112.82088 * 50.05495 * 17 15 5 35 35 H 1.09000 * 113.66263 * 335.13404 * 18 17 15 36 36 H 1.09000 * 113.66581 * 106.18679 * 18 17 15 37 37 H 1.09007 * 113.66237 * 215.22944 * 20 19 18 38 38 H 1.08998 * 113.65834 * 346.27237 * 20 19 18 39 39 H 1.08993 * 113.58017 * 270.13253 * 21 20 19 40 40 H 1.09001 * 113.65300 * 139.34472 * 21 20 19 41 41 H 1.09007 * 113.66016 * 13.62524 * 22 19 18 42 42 H 1.08997 * 113.66845 * 144.68813 * 22 19 18 43 43 H 1.09007 * 113.66000 * 220.69685 * 23 19 18 44 44 H 1.08995 * 113.66537 * 89.63896 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3403 7 6 5.5017 -1.2983 -0.9413 8 1 6.2203 -0.5463 -0.6506 9 6 5.8613 -2.6293 -0.9484 10 7 7.0789 -2.9833 -0.5997 11 14 4.6185 -3.9299 -1.4519 12 1 4.7042 -4.1554 -2.9171 13 1 4.9126 -5.1983 -0.7377 14 1 3.2509 -3.4699 -1.1010 15 6 4.2633 1.3328 -2.3200 16 8 4.1513 2.5383 -2.2476 17 6 4.7166 0.6943 -3.6077 18 6 6.2114 0.3262 -3.6196 19 6 6.2342 0.8317 -5.0643 20 6 7.5023 1.4313 -5.6732 21 6 7.7130 0.0693 -6.3589 22 6 6.1926 -0.1426 -6.2420 23 6 5.0302 1.7097 -4.7215 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8509 0.5685 0.8426 30 1 3.9786 2.1764 0.0902 31 1 3.3857 -1.3632 -0.6715 32 1 3.9138 -1.2123 -2.3645 33 1 7.3318 -3.9198 -0.6042 34 1 4.0650 -0.1181 -3.9290 35 1 6.8148 0.9248 -2.9372 36 1 6.3994 -0.7434 -3.5265 37 1 7.3095 2.2470 -6.3701 38 1 8.2686 1.6737 -4.9369 39 1 8.2980 -0.6324 -5.7644 40 1 8.0644 0.1474 -7.3878 41 1 5.9128 -1.1578 -5.9602 42 1 5.6317 0.2304 -7.0989 43 1 4.2757 1.7437 -5.5076 44 1 5.3010 2.6977 -4.3493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592761381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:49 Heat of formation + Delta-G solvation = -41.491705 kcal Electronic energy + Delta-G solvation = -23479.384765 eV Core-core repulsion = 20205.344251 eV Total energy + Delta-G solvation = -3274.040514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.40977 -38.68790 -37.40771 -34.95360 -34.19945 -32.49043 -30.09537 -27.55750 -26.26901 -25.52670 -25.29778 -24.87566 -22.57267 -22.40614 -20.77702 -18.00817 -17.60690 -16.87719 -16.72569 -15.97719 -15.80429 -15.29908 -15.14905 -14.79137 -14.67234 -14.19658 -13.71824 -13.54508 -12.61931 -12.56745 -12.43138 -12.23567 -12.06708 -11.91075 -11.74441 -11.58572 -11.50305 -11.43165 -10.96337 -10.79242 -10.65418 -10.50271 -10.42115 -10.17481 -9.92011 -9.63281 -9.59973 -9.50893 -9.45742 -8.84060 -8.60848 -7.67721 -6.13226 -4.12123 3.23402 3.32431 3.36662 3.38360 3.87580 4.08687 4.35433 4.76062 4.82257 4.94658 5.08076 5.13048 5.18993 5.30804 5.33461 5.41837 5.52431 5.58743 5.65417 5.71622 5.75804 5.76588 5.83839 5.90044 5.91591 6.09428 6.12765 6.17278 6.25351 6.32707 6.34769 6.37902 6.60768 6.62641 6.82371 6.86541 6.92978 6.94275 7.37471 7.44973 7.57202 8.23040 8.50843 8.90445 9.00947 9.47593 10.99315 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.007368 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.323617 B = 3799.346731 C = 5299.155595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.582 5.582 6 C 0.212 3.788 7 C -0.529 4.529 8 H 0.077 0.923 9 C 0.077 3.923 10 N -0.894 5.894 11 Si 0.864 3.136 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.261 1.261 15 C 0.527 3.473 16 O -0.577 6.577 17 C -0.123 4.123 18 C -0.073 4.073 19 C -0.112 4.112 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.104 4.104 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 5.643 -6.325 10.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.310 5.310 6 C 0.090 3.910 7 C -0.568 4.568 8 H 0.095 0.905 9 C -0.126 4.126 10 N -0.532 5.532 11 Si 0.691 3.309 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.185 1.185 15 C 0.316 3.684 16 O -0.459 6.459 17 C -0.144 4.144 18 C -0.111 4.111 19 C -0.112 4.112 20 C -0.164 4.164 21 C -0.176 4.176 22 C -0.156 4.156 23 C -0.141 4.141 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.595 5.903 -6.233 10.825 hybrid contribution -0.853 -0.767 -0.106 1.152 sum -7.448 5.135 -6.339 11.047 Atomic orbital electron populations 1.22684 0.82140 1.02305 0.99339 1.88019 1.18717 1.27817 1.95249 1.23052 0.95370 0.84695 0.99851 1.21344 0.90832 0.99821 0.88324 1.47851 1.63812 1.08987 1.10398 1.19831 0.98202 0.75524 0.97396 1.21366 0.95885 0.93516 1.46032 0.90491 1.24807 0.94923 0.98167 0.94697 1.69891 1.18105 1.17300 1.47894 0.87016 0.82879 0.81858 0.79141 1.20036 1.21138 1.18547 1.20416 0.76048 0.86489 0.85485 1.90561 1.55744 1.14827 1.84759 1.22535 0.99250 0.99462 0.93158 1.22447 0.92976 1.03068 0.92614 1.22560 0.95521 0.97497 0.95588 1.22715 0.97599 0.96565 0.99543 1.22797 0.96651 0.97988 1.00150 1.22641 0.96455 0.99351 0.97116 1.22692 0.96701 0.98183 0.96564 0.94595 0.89993 0.94555 0.93108 0.93328 0.89380 0.89306 0.93776 0.95695 0.92586 0.87834 0.89926 0.89209 0.90522 0.91502 0.90030 0.92102 0.91218 0.90388 0.91934 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.53 9.53 -35.23 -0.34 -6.86 16 3 C 0.05 0.77 6.28 37.15 0.23 1.01 16 4 C 0.12 2.23 5.81 -4.04 -0.02 2.20 16 5 N -0.58 -12.17 2.42 -175.06 -0.42 -12.60 16 6 C 0.21 4.80 3.83 -5.20 -0.02 4.78 16 7 C -0.53 -13.78 8.67 -34.44 -0.30 -14.08 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 11 Si 0.86 20.16 27.47 -169.99 -4.67 15.49 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 14 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 15 C 0.53 10.94 7.20 -10.98 -0.08 10.86 16 16 O -0.58 -12.83 15.48 5.56 0.09 -12.75 16 17 C -0.12 -2.27 2.93 -90.79 -0.27 -2.53 16 18 C -0.07 -1.37 6.44 -26.20 -0.17 -1.53 16 19 C -0.11 -1.71 1.11 -154.63 -0.17 -1.88 16 20 C -0.13 -1.71 7.84 -26.29 -0.21 -1.92 16 21 C -0.14 -1.78 8.08 -25.75 -0.21 -1.99 16 22 C -0.12 -1.60 7.84 -26.28 -0.21 -1.81 16 23 C -0.10 -1.67 7.16 -26.28 -0.19 -1.85 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 30 H 0.09 1.59 7.43 -51.93 -0.39 1.21 16 31 H 0.04 1.04 6.17 -51.93 -0.32 0.72 16 32 H 0.03 0.56 5.67 -51.93 -0.29 0.26 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.10 1.86 7.01 -51.93 -0.36 1.49 16 35 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 36 H 0.09 1.86 7.80 -51.93 -0.40 1.45 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 44 H 0.09 1.57 7.44 -51.93 -0.39 1.18 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -29.77 351.04 -7.53 -37.30 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.66 Total: 4.40 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.59 Total: -5.25 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.35 Total: -37.61 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.25 Total: -19.61 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.77 -7.53 -37.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592761381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.196 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds