Wall clock time and date at job start Tue Mar 31 2020 05:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34226 * 116.99592 * 2 1 4 4 O 1.20819 * 120.00294 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99498 * 179.97438 * 3 2 1 6 6 H 1.08995 * 110.36399 * 57.82066 * 5 3 2 7 7 C 1.54381 * 110.32537 * 295.63995 * 5 3 2 8 8 N 1.48557 * 104.59190 * 217.25196 * 7 5 3 9 9 C 1.46905 * 110.99976 * 159.03832 * 8 7 5 10 10 H 1.08999 * 109.47016 * 300.72142 * 9 8 7 11 11 C 1.53000 * 109.47198 * 180.71794 * 9 8 7 12 12 C 1.53000 * 109.46867 * 60.71815 * 9 8 7 13 13 C 1.50698 * 109.47187 * 185.51892 * 12 9 8 14 14 H 1.08008 * 119.99828 * 5.31380 * 13 12 9 15 15 C 1.37874 * 120.00161 * 185.31520 * 13 12 9 16 16 N 1.31517 * 120.00119 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00091 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47330 * 90.00035 * 17 15 13 19 19 H 1.48497 * 109.47415 * 210.00360 * 17 15 13 20 20 H 1.48498 * 109.46876 * 330.00206 * 17 15 13 21 21 C 1.48562 * 104.22332 * 39.48287 * 8 7 5 22 22 C 1.54260 * 110.32149 * 180.02562 * 5 3 2 23 23 H 1.09004 * 110.32392 * 359.97438 * 22 5 3 24 24 C 1.53001 * 110.32409 * 237.79631 * 22 5 3 25 25 C 1.52995 * 117.50175 * 128.74691 * 24 22 5 26 26 C 1.52999 * 117.49879 * 60.08388 * 24 22 5 27 27 H 1.08995 * 109.47086 * 300.00145 * 1 2 3 28 28 H 1.09000 * 109.46684 * 59.99949 * 1 2 3 29 29 H 1.08999 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.09001 * 110.40791 * 336.02812 * 7 5 3 31 31 H 1.08991 * 110.41032 * 98.47265 * 7 5 3 32 32 H 1.09001 * 109.47155 * 180.02562 * 11 9 8 33 33 H 1.08999 * 109.47133 * 300.00567 * 11 9 8 34 34 H 1.09001 * 109.46660 * 60.00345 * 11 9 8 35 35 H 1.09000 * 109.47536 * 305.51845 * 12 9 8 36 36 H 1.09005 * 109.46797 * 65.51893 * 12 9 8 37 37 H 0.97004 * 120.00116 * 179.97438 * 16 15 13 38 38 H 1.08996 * 110.41347 * 201.73478 * 21 8 7 39 39 H 1.09007 * 110.41078 * 79.29779 * 21 8 7 40 40 H 1.09003 * 115.54630 * 274.42058 * 24 22 5 41 41 H 1.08997 * 117.49674 * 0.02562 * 25 24 22 42 42 H 1.09004 * 117.49971 * 145.01571 * 25 24 22 43 43 H 1.09000 * 117.49463 * 214.97939 * 26 24 22 44 44 H 1.08990 * 117.50181 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9740 0.7511 -0.8640 7 6 4.1342 0.6776 1.3061 8 7 5.2934 1.5442 1.6410 9 6 5.6364 1.4373 3.0654 10 1 4.7787 1.7344 3.6689 11 6 6.8205 2.3554 3.3751 12 6 6.0134 -0.0091 3.3920 13 6 6.2336 -0.1479 4.8763 14 1 6.0335 0.6865 5.5323 15 6 6.6906 -1.3400 5.3970 16 7 6.8824 -1.4612 6.6924 17 14 7.0361 -2.7833 4.2625 18 1 8.4482 -2.7275 3.8064 19 1 6.8019 -4.0545 4.9934 20 1 6.1328 -2.7152 3.0859 21 6 4.8323 2.9161 1.3059 22 6 4.0257 2.7475 0.0011 23 1 3.1626 3.4133 0.0005 24 6 4.9143 3.0274 -1.2125 25 6 4.5569 4.2306 -2.0874 26 6 4.3054 2.8100 -2.5992 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.3874 0.7184 2.0990 31 1 4.4615 -0.3492 1.1434 32 1 7.0753 2.2758 4.4319 33 1 7.6781 2.0584 2.7715 34 1 6.5518 3.3858 3.1424 35 1 5.2077 -0.6738 3.0806 36 1 6.9285 -0.2744 2.8625 37 1 7.2035 -2.3001 7.0588 38 1 5.6854 3.5748 1.1432 39 1 4.1948 3.3073 2.0989 40 1 5.9714 2.7942 -1.0849 41 1 3.6889 4.8230 -1.7981 42 1 5.3788 4.7889 -2.5356 43 1 4.9620 2.4343 -3.3839 44 1 3.2719 2.4672 -2.6469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593128942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:05 Heat of formation + Delta-G solvation = -62.818540 kcal Electronic energy + Delta-G solvation = -23083.733360 eV Core-core repulsion = 19808.768045 eV Total energy + Delta-G solvation = -3274.965315 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.93591 -39.10724 -37.00761 -36.50251 -34.14582 -32.23286 -30.04592 -29.02528 -27.90122 -27.00970 -23.61675 -23.18918 -22.52723 -21.71568 -20.94467 -19.40205 -19.14909 -17.65462 -17.14320 -16.66634 -16.46660 -15.77777 -15.21677 -14.62800 -14.29810 -14.11111 -13.86920 -13.45859 -13.18731 -13.03162 -12.62672 -12.35978 -12.25732 -12.07400 -11.69439 -11.62060 -11.54488 -11.39894 -11.10385 -10.93800 -10.92651 -10.79955 -10.70870 -10.46757 -10.25422 -10.03428 -9.97871 -9.78276 -9.53643 -9.16381 -8.52169 -8.05945 -6.03762 -4.01461 2.09900 2.59016 3.32748 3.40106 3.44576 3.68527 4.29699 4.46583 4.52607 4.56815 4.61617 4.87160 4.92345 4.95542 5.02283 5.03654 5.24943 5.30601 5.37487 5.40882 5.53421 5.57350 5.59442 5.79863 5.81792 5.85141 5.90420 6.02354 6.08688 6.12039 6.15757 6.25251 6.26664 6.35912 6.58385 6.72594 7.01641 7.11822 7.18710 7.42539 7.57297 7.64624 7.84750 8.53490 9.00197 9.58848 11.09425 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.005016 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.582724 B = 5580.494716 C = 6516.064152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.471 3.529 4 O -0.509 6.509 5 C -0.084 4.084 6 H 0.119 0.881 7 C 0.051 3.949 8 N -0.504 5.504 9 C 0.083 3.917 10 H 0.036 0.964 11 C -0.129 4.129 12 C -0.003 4.003 13 C -0.517 4.517 14 H 0.072 0.928 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 C 0.039 3.961 22 C -0.056 4.056 23 H 0.097 0.903 24 C -0.134 4.134 25 C -0.178 4.178 26 C -0.184 4.184 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.033 0.967 35 H 0.014 0.986 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.421 6.799 -17.668 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.314 3.686 4 O -0.397 6.397 5 C -0.104 4.104 6 H 0.137 0.863 7 C -0.078 4.078 8 N -0.228 5.228 9 C -0.024 4.024 10 H 0.054 0.946 11 C -0.187 4.187 12 C -0.041 4.041 13 C -0.555 4.555 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.190 1.190 21 C -0.089 4.089 22 C -0.075 4.075 23 H 0.115 0.885 24 C -0.152 4.152 25 C -0.215 4.215 26 C -0.221 4.221 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.032 0.968 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.108 6.812 -17.799 20.711 hybrid contribution -0.784 -0.637 0.038 1.010 sum -8.892 6.175 -17.761 20.801 Atomic orbital electron populations 1.23275 0.76503 1.03750 1.02411 1.86554 1.23299 1.33315 1.83843 1.23758 0.92125 0.81238 0.71507 1.90617 1.67043 1.36359 1.45706 1.21955 0.86306 0.99449 1.02652 0.86284 1.22962 0.92649 0.99137 0.93012 1.65562 1.31934 1.03672 1.21665 1.21849 0.97064 0.99253 0.84280 0.94559 1.21704 0.97803 0.96383 1.02772 1.19618 0.96566 0.90523 0.97373 1.21068 1.44335 0.99529 0.90596 0.90994 1.24982 0.94945 0.98524 0.94854 1.69914 1.46659 1.26249 1.11454 0.86790 0.79202 0.82063 0.81314 1.20250 1.21562 1.18981 1.23141 0.98190 0.92856 0.94723 1.21593 0.97978 0.93665 0.94220 0.88463 1.22312 1.00186 1.02552 0.90142 1.23020 1.03280 0.91018 1.04200 1.22931 1.01769 0.99908 0.97471 0.91846 0.92060 0.88032 0.93370 0.88583 0.90961 0.92667 0.94751 0.96787 0.95976 0.92769 0.89519 0.93818 0.86757 0.88901 0.88894 0.88811 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.57 10.57 -39.25 -0.41 -4.99 16 3 C 0.47 6.53 7.12 36.01 0.26 6.78 16 4 O -0.51 -7.91 15.00 -18.74 -0.28 -8.19 16 5 C -0.08 -1.10 3.00 -90.38 -0.27 -1.38 16 6 H 0.12 1.41 7.39 -51.93 -0.38 1.02 16 7 C 0.05 0.80 4.90 -2.18 -0.01 0.79 16 8 N -0.50 -8.40 5.20 -222.06 -1.15 -9.55 16 9 C 0.08 1.64 1.85 -67.71 -0.13 1.51 16 10 H 0.04 0.76 7.98 -51.93 -0.41 0.34 16 11 C -0.13 -2.39 8.96 37.16 0.33 -2.06 16 12 C 0.00 -0.07 3.50 -27.88 -0.10 -0.17 16 13 C -0.52 -14.39 8.86 -34.44 -0.31 -14.69 16 14 H 0.07 2.15 7.54 -52.48 -0.40 1.76 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 17 Si 0.88 21.67 27.37 -169.99 -4.65 17.02 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.29 6.70 56.52 0.38 -5.91 16 21 C 0.04 0.55 5.02 -2.21 -0.01 0.54 16 22 C -0.06 -0.70 2.83 -89.27 -0.25 -0.96 16 23 H 0.10 1.31 6.26 -51.93 -0.33 0.99 16 24 C -0.13 -1.46 4.91 -90.62 -0.44 -1.90 16 25 C -0.18 -1.71 10.19 -26.70 -0.27 -1.98 16 26 C -0.18 -1.79 9.64 -26.69 -0.26 -2.05 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.81 7.67 -51.93 -0.40 0.42 16 31 H 0.10 1.55 7.54 -51.93 -0.39 1.15 16 32 H 0.07 1.47 7.10 -51.93 -0.37 1.11 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.03 0.54 7.04 -51.93 -0.37 0.17 16 35 H 0.01 0.33 6.11 -51.93 -0.32 0.01 16 36 H 0.02 0.53 7.28 -51.93 -0.38 0.15 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.09 1.15 7.41 -51.93 -0.38 0.77 16 39 H 0.04 0.65 7.91 -51.92 -0.41 0.24 16 40 H 0.11 1.30 8.10 -51.93 -0.42 0.87 16 41 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -30.99 348.51 -8.46 -39.45 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.49 Total: 0.17 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -0.49 Total: -12.30 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.38 Total: -36.41 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.70 Total: -13.18 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.65 Total: 17.02 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.99 -8.46 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593128942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.373 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds