Wall clock time and date at job start Tue Mar 31 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34237 * 117.00069 * 2 1 4 4 O 1.20820 * 119.99566 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99964 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.35291 * 60.68943 * 5 3 2 7 7 C 1.53994 * 110.30664 * 298.54764 * 5 3 2 8 8 N 1.47906 * 107.05749 * 242.31025 * 7 5 3 9 9 C 1.46896 * 110.99928 * 214.15557 * 8 7 5 10 10 H 1.08998 * 109.47540 * 308.06785 * 9 8 7 11 11 C 1.52999 * 109.47127 * 68.07186 * 9 8 7 12 12 C 1.53005 * 109.47129 * 188.06722 * 9 8 7 13 13 C 1.50700 * 109.46766 * 63.64988 * 12 9 8 14 14 H 1.07998 * 120.00314 * 1.76702 * 13 12 9 15 15 C 1.37876 * 119.99670 * 181.75731 * 13 12 9 16 16 N 1.31523 * 120.00071 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00368 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46913 * 89.99710 * 17 15 13 19 19 H 1.48499 * 109.47483 * 209.99760 * 17 15 13 20 20 H 1.48501 * 109.46895 * 329.99839 * 17 15 13 21 21 C 1.48537 * 105.81862 * 334.67358 * 8 7 5 22 22 C 1.54598 * 110.30632 * 182.83437 * 5 3 2 23 23 H 1.09003 * 110.72287 * 22.33009 * 22 5 3 24 24 C 1.52998 * 110.71967 * 259.23042 * 22 5 3 25 25 C 1.53001 * 117.49978 * 128.74851 * 24 22 5 26 26 C 1.52992 * 117.50145 * 60.08801 * 24 22 5 27 27 H 1.09003 * 109.46980 * 59.99745 * 1 2 3 28 28 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47234 * 300.00084 * 1 2 3 30 30 H 1.08993 * 109.92076 * 122.95823 * 7 5 3 31 31 H 1.09005 * 109.92007 * 1.66338 * 7 5 3 32 32 H 1.08996 * 109.47161 * 187.76675 * 11 9 8 33 33 H 1.09006 * 109.46899 * 307.76289 * 11 9 8 34 34 H 1.09003 * 109.47349 * 67.75865 * 11 9 8 35 35 H 1.08996 * 109.46998 * 183.65277 * 12 9 8 36 36 H 1.09001 * 109.47030 * 303.65860 * 12 9 8 37 37 H 0.96995 * 120.00260 * 180.02562 * 16 15 13 38 38 H 1.09002 * 110.66598 * 157.64258 * 21 8 7 39 39 H 1.08997 * 110.66432 * 280.77025 * 21 8 7 40 40 H 1.09000 * 115.54757 * 274.41525 * 24 22 5 41 41 H 1.09000 * 117.49632 * 359.97438 * 25 24 22 42 42 H 1.09000 * 117.50163 * 145.01454 * 25 24 22 43 43 H 1.09001 * 117.50350 * 214.97338 * 26 24 22 44 44 H 1.09004 * 117.49915 * 359.97299 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9708 0.7953 -0.8920 7 6 4.1367 0.6134 1.2677 8 7 4.8497 1.6663 2.0231 9 6 6.0241 1.1158 2.7126 10 1 5.7265 0.2475 3.3005 11 6 7.0723 0.6973 1.6797 12 6 6.6170 2.1798 3.6386 13 6 5.6162 2.5270 4.7105 14 1 4.6647 2.0173 4.7464 15 6 5.9154 3.4952 5.6454 16 7 5.0421 3.7979 6.5811 17 14 7.5609 4.3770 5.5831 18 1 7.4415 5.5881 4.7320 19 1 7.9618 4.7748 6.9565 20 1 8.5876 3.4693 5.0111 21 6 5.2507 2.6842 1.0185 22 6 4.0264 2.7491 0.0712 23 1 3.2420 3.3778 0.4926 24 6 4.4386 3.2555 -1.3124 25 6 3.8193 4.5677 -1.7978 26 6 3.3787 3.2384 -2.4156 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.8308 -0.1806 0.9924 31 1 3.3252 0.2077 1.8720 32 1 7.8819 0.1648 2.1788 33 1 6.6113 0.0450 0.9380 34 1 7.4704 1.5840 1.1863 35 1 7.5254 1.7936 4.1010 36 1 6.8548 3.0728 3.0606 37 1 5.2524 4.4793 7.2386 38 1 5.4197 3.6497 1.4954 39 1 6.1395 2.3607 0.4768 40 1 5.4690 3.0482 -1.6012 41 1 3.1180 5.0700 -1.1315 42 1 4.4422 5.2235 -2.4061 43 1 3.7118 3.0202 -3.4303 44 1 2.3878 2.8658 -2.1558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593128943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:07 Heat of formation + Delta-G solvation = -53.309251 kcal Electronic energy + Delta-G solvation = -23364.985203 eV Core-core repulsion = 20090.432242 eV Total energy + Delta-G solvation = -3274.552961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82756 -39.07204 -37.09066 -36.29478 -33.97995 -32.13280 -29.59372 -29.09127 -27.73489 -27.38275 -23.57692 -23.16927 -22.36997 -21.76163 -20.86398 -19.50026 -18.78905 -17.44795 -16.86439 -16.54598 -16.51816 -15.81216 -15.10187 -14.48463 -14.27309 -14.11305 -13.71292 -13.45557 -13.15478 -13.01065 -12.48134 -12.25794 -12.18608 -11.96448 -11.90668 -11.56970 -11.46231 -11.40642 -11.18592 -11.11078 -10.79902 -10.75578 -10.55334 -10.30968 -10.17494 -9.96717 -9.85024 -9.74113 -9.52433 -9.03810 -8.40126 -7.65543 -5.88306 -3.82584 2.27679 2.71674 3.37288 3.44895 3.46600 3.75216 4.35433 4.55051 4.56254 4.70148 4.84536 4.91815 4.99564 5.03757 5.11882 5.16736 5.32471 5.44836 5.46282 5.50848 5.53541 5.64256 5.66129 5.67524 5.73952 5.78337 5.87548 5.92845 6.11843 6.14556 6.18436 6.29619 6.38883 6.44239 6.46635 6.61394 6.76293 7.09200 7.29339 7.54884 7.75236 7.81017 7.95175 8.73961 9.24288 9.74334 11.25813 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.005159 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.837485 B = 5425.878148 C = 5874.427963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.501 6.501 5 C -0.085 4.085 6 H 0.110 0.890 7 C 0.042 3.958 8 N -0.483 5.483 9 C 0.086 3.914 10 H 0.077 0.923 11 C -0.189 4.189 12 C -0.003 4.003 13 C -0.491 4.491 14 H 0.078 0.922 15 C 0.062 3.938 16 N -0.907 5.907 17 Si 0.873 3.127 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.269 1.269 21 C 0.041 3.959 22 C -0.051 4.051 23 H 0.103 0.897 24 C -0.144 4.144 25 C -0.171 4.171 26 C -0.184 4.184 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.012 0.988 37 H 0.259 0.741 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 -6.644 -18.547 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.317 3.683 4 O -0.387 6.387 5 C -0.105 4.105 6 H 0.127 0.873 7 C -0.086 4.086 8 N -0.206 5.206 9 C -0.022 4.022 10 H 0.095 0.905 11 C -0.248 4.248 12 C -0.041 4.041 13 C -0.529 4.529 14 H 0.096 0.904 15 C -0.138 4.138 16 N -0.548 5.548 17 Si 0.701 3.299 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.193 1.193 21 C -0.086 4.086 22 C -0.069 4.069 23 H 0.121 0.879 24 C -0.163 4.163 25 C -0.208 4.208 26 C -0.221 4.221 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.525 -6.019 -17.956 19.263 hybrid contribution 1.126 0.237 -0.567 1.283 sum -2.399 -5.782 -18.523 19.552 Atomic orbital electron populations 1.23241 0.76634 1.03467 1.02527 1.86510 1.23213 1.33688 1.84265 1.23591 0.91869 0.81189 0.71690 1.90642 1.66922 1.36273 1.44882 1.21993 0.87253 0.99750 1.01455 0.87250 1.22860 0.98977 0.94924 0.91878 1.65037 1.23357 1.09082 1.23152 1.21847 0.87599 0.98807 0.93966 0.90470 1.22582 1.00790 1.00999 1.00416 1.19617 0.96366 0.93337 0.94753 1.21041 1.02587 1.20243 1.09044 0.90368 1.25009 0.96285 0.96913 0.95563 1.69916 1.35056 1.32886 1.16922 0.86903 0.85582 0.80436 0.77016 1.20546 1.21665 1.19341 1.23338 0.94853 0.98399 0.92032 1.21763 0.99048 0.92860 0.93278 0.87856 1.22281 0.97801 1.01970 0.94213 1.22977 1.03590 0.90562 1.03683 1.22970 0.99779 1.02121 0.97228 0.92178 0.88284 0.91716 0.92586 0.90113 0.92369 0.93438 0.92476 0.96417 0.96980 0.93086 0.89060 0.93104 0.87703 0.88443 0.89018 0.89213 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.68 10.48 -39.28 -0.41 -5.09 16 3 C 0.47 6.94 6.61 36.01 0.24 7.18 16 4 O -0.50 -8.48 14.24 -18.75 -0.27 -8.74 16 5 C -0.08 -1.15 2.79 -90.41 -0.25 -1.40 16 6 H 0.11 1.23 7.85 -51.93 -0.41 0.82 16 7 C 0.04 0.64 6.07 -2.75 -0.02 0.62 16 8 N -0.48 -8.95 4.92 -222.50 -1.09 -10.05 16 9 C 0.09 1.64 2.24 -67.71 -0.15 1.49 16 10 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 11 C -0.19 -2.85 8.18 37.16 0.30 -2.55 16 12 C 0.00 -0.08 3.51 -27.88 -0.10 -0.17 16 13 C -0.49 -13.94 9.36 -34.44 -0.32 -14.26 16 14 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 15 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 16 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 17 Si 0.87 21.94 27.43 -169.99 -4.66 17.27 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.27 -6.43 6.59 56.52 0.37 -6.06 16 21 C 0.04 0.68 5.00 -1.90 -0.01 0.67 16 22 C -0.05 -0.74 2.58 -88.76 -0.23 -0.97 16 23 H 0.10 1.79 6.73 -51.93 -0.35 1.44 16 24 C -0.14 -1.73 5.12 -90.62 -0.46 -2.19 16 25 C -0.17 -1.98 10.19 -26.70 -0.27 -2.25 16 26 C -0.18 -2.05 9.94 -26.70 -0.27 -2.32 16 27 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.06 0.75 6.00 -51.93 -0.31 0.44 16 31 H 0.08 1.30 7.63 -51.93 -0.40 0.90 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.62 6.26 -51.93 -0.32 0.30 16 34 H 0.06 0.84 6.41 -51.93 -0.33 0.51 16 35 H 0.02 0.42 7.32 -51.93 -0.38 0.04 16 36 H 0.01 0.28 6.47 -51.93 -0.34 -0.06 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.09 1.69 7.68 -51.93 -0.40 1.30 16 39 H 0.05 0.74 5.23 -51.93 -0.27 0.47 16 40 H 0.10 1.13 7.94 -51.93 -0.41 0.72 16 41 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.19 6.68 -51.93 -0.35 0.84 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -32.46 342.96 -8.29 -40.75 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.23 Total: 1.49 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.57 Total: -13.02 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.32 Total: -37.84 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.68 Total: -13.84 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.66 Total: 17.27 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.46 -8.29 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593128943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.557 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds