Wall clock time and date at job start Tue Mar 31 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99965 * 2 1 4 4 O 1.20821 * 120.00059 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00035 * 179.97438 * 3 2 1 6 6 N 1.46902 * 112.84762 * 324.99980 * 5 3 2 7 7 C 1.46894 * 110.99958 * 172.75556 * 6 5 3 8 8 C 1.53003 * 109.47240 * 165.53864 * 7 6 5 9 9 C 1.53003 * 109.47078 * 186.05087 * 8 7 6 10 10 C 1.50693 * 109.46908 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00302 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00190 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99670 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00089 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.46928 * 60.00150 * 14 12 10 16 16 H 1.48502 * 109.46818 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47219 * 299.99889 * 14 12 10 18 18 C 1.46906 * 110.99977 * 48.80229 * 6 5 3 19 19 C 1.53001 * 117.49820 * 263.70253 * 18 6 5 20 20 C 1.52996 * 117.49502 * 195.04337 * 18 6 5 21 21 C 1.53777 * 113.69105 * 96.26725 * 5 3 2 22 22 C 1.53773 * 87.08138 * 89.12708 * 21 5 3 23 23 C 1.53773 * 113.61567 * 193.80487 * 5 3 2 24 24 H 1.09000 * 109.47149 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47547 * 300.00361 * 1 2 3 26 26 H 1.09005 * 109.46580 * 60.00523 * 1 2 3 27 27 H 1.09003 * 109.46920 * 45.54140 * 7 6 5 28 28 H 1.09001 * 109.47415 * 285.54373 * 7 6 5 29 29 H 1.08994 * 109.47166 * 306.05094 * 8 7 6 30 30 H 1.09002 * 109.46606 * 66.05346 * 8 7 6 31 31 H 1.09002 * 109.47321 * 300.00260 * 9 8 7 32 32 H 1.08993 * 109.46813 * 60.00168 * 9 8 7 33 33 H 0.96999 * 120.00176 * 179.97438 * 13 12 10 34 34 H 1.08997 * 115.54624 * 49.37993 * 18 6 5 35 35 H 1.09000 * 117.49677 * 359.97438 * 19 18 6 36 36 H 1.08996 * 117.49336 * 145.02562 * 19 18 6 37 37 H 1.09000 * 117.49885 * 214.97842 * 20 18 6 38 38 H 1.09000 * 117.50325 * 359.97438 * 20 18 6 39 39 H 1.09001 * 113.61514 * 203.67983 * 21 5 3 40 40 H 1.09004 * 113.61323 * 334.57795 * 21 5 3 41 41 H 1.09003 * 113.61822 * 270.88204 * 22 21 5 42 42 H 1.09005 * 113.61896 * 139.98404 * 22 21 5 43 43 H 1.09007 * 113.61577 * 25.34758 * 23 5 3 44 44 H 1.08995 * 113.62034 * 156.25276 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 4.1937 0.1975 0.7775 7 6 5.6532 0.2100 0.6117 8 6 6.2964 -0.6662 1.6886 9 6 7.8188 -0.5344 1.6111 10 6 8.4523 -1.3978 2.6714 11 1 7.8312 -1.9819 3.3344 12 6 9.8248 -1.4423 2.7950 13 7 10.5811 -0.7316 1.9873 14 14 10.6100 -2.5121 4.1097 15 1 10.2234 -3.9290 3.8909 16 1 12.0876 -2.3843 4.0345 17 1 10.1432 -2.0729 5.4493 18 6 3.6335 -1.1104 0.4117 19 6 2.5097 -1.6676 1.2878 20 6 3.9090 -2.2850 1.3526 21 6 4.1759 1.4604 -1.3990 22 6 4.0435 2.9752 -1.1698 23 6 4.1098 2.6736 0.3367 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 6.0210 1.2317 0.7072 28 1 5.9103 -0.1781 -0.3739 29 1 5.9534 -0.3441 2.6717 30 1 6.0131 -1.7064 1.5276 31 1 8.1619 -0.8564 0.6279 32 1 8.1020 0.5057 1.7721 33 1 11.5466 -0.7625 2.0745 34 1 3.5902 -1.3209 -0.6569 35 1 2.1864 -1.0640 2.1359 36 1 1.7273 -2.2451 0.7956 37 1 4.0463 -3.2684 0.9030 38 1 4.5062 -2.0875 2.2428 39 1 5.2082 1.1188 -1.4744 40 1 3.5445 1.0837 -2.2037 41 1 3.0854 3.3835 -1.4916 42 1 4.8941 3.5487 -1.5382 43 1 3.4249 3.2763 0.9333 44 1 5.1240 2.6637 0.7358 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595538501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:03 Heat of formation + Delta-G solvation = -40.585736 kcal Electronic energy + Delta-G solvation = -23420.501250 eV Core-core repulsion = 20146.500022 eV Total energy + Delta-G solvation = -3274.001228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.39079 -40.09328 -38.55668 -36.98441 -35.96434 -34.30820 -32.54794 -29.50825 -28.13803 -26.93018 -26.14042 -24.54397 -23.64573 -22.85500 -21.74490 -21.58252 -20.03862 -18.59714 -18.34963 -17.60520 -17.43930 -16.78389 -16.50489 -16.38221 -16.14075 -15.67099 -14.97200 -14.55500 -14.32112 -14.19635 -13.97994 -13.76757 -13.56548 -13.42742 -13.00662 -12.89177 -12.57946 -12.49645 -12.46664 -12.20449 -12.11094 -11.95784 -11.89156 -11.63878 -11.49164 -11.37482 -11.15469 -11.10826 -10.73427 -10.62241 -10.46743 -9.29217 -8.16118 -6.25980 1.01569 1.42101 1.44744 1.52458 1.69746 2.43469 2.72029 3.06675 3.17393 3.30928 3.42595 3.67681 3.79301 4.11532 4.18661 4.23274 4.24956 4.35139 4.37967 4.38788 4.55105 4.64228 4.68756 4.75605 4.77766 4.79482 4.88204 4.95085 4.95676 4.97959 5.07761 5.16468 5.23824 5.24138 5.33944 5.41054 5.47221 5.57471 5.81787 5.91317 5.95829 6.18969 6.32350 6.70502 6.90705 7.42770 8.95507 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.004232 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.417701 B = 6614.934106 C = 7438.057629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.331 6.331 3 C 0.497 3.503 4 O -0.527 6.527 5 C 0.086 3.914 6 N -0.499 5.499 7 C 0.069 3.931 8 C -0.094 4.094 9 C 0.028 3.972 10 C -0.539 4.539 11 H 0.058 0.942 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.960 3.040 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.001 3.999 19 C -0.113 4.113 20 C -0.186 4.186 21 C -0.154 4.154 22 C -0.129 4.129 23 C -0.118 4.118 24 H 0.131 0.869 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.066 0.934 31 H -0.008 1.008 32 H -0.010 1.010 33 H 0.263 0.737 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.771 1.238 -6.826 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.245 6.245 3 C 0.341 3.659 4 O -0.416 6.416 5 C -0.005 4.005 6 N -0.223 5.223 7 C -0.058 4.058 8 C -0.131 4.131 9 C -0.010 4.010 10 C -0.577 4.577 11 H 0.076 0.924 12 C -0.196 4.196 13 N -0.574 5.574 14 Si 0.785 3.215 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.108 4.108 19 C -0.150 4.150 20 C -0.223 4.223 21 C -0.194 4.194 22 C -0.166 4.166 23 C -0.156 4.156 24 H 0.149 0.851 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.010 0.990 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.961 1.632 -6.362 21.014 hybrid contribution 0.840 -0.333 -0.182 0.922 sum -19.122 1.299 -6.544 20.252 Atomic orbital electron populations 1.23559 0.75854 1.05574 1.02230 1.86941 1.24011 1.30833 1.82757 1.22772 0.90251 0.81859 0.71047 1.90620 1.66843 1.37351 1.46767 1.22277 0.87289 0.94815 0.96132 1.61840 1.04628 1.01906 1.53889 1.22140 0.85217 1.00616 0.97788 1.21627 0.94697 0.99453 0.97355 1.18962 0.91938 0.94967 0.95125 1.21644 0.92049 1.26848 1.17136 0.92411 1.25920 0.98174 0.97135 0.98397 1.70079 1.05024 1.42488 1.39760 0.85574 0.77051 0.79411 0.79461 1.19151 1.20921 1.19391 1.22315 1.04609 0.88548 0.95284 1.22777 0.90898 1.00943 1.00430 1.23349 1.00657 0.96500 1.01829 1.23579 1.02587 0.98170 0.95018 1.22765 1.03380 0.95497 0.94996 1.23130 1.02100 0.91988 0.98344 0.85115 0.92331 0.92075 0.90781 0.94388 0.93606 0.91506 0.99011 0.99176 0.92874 0.89447 0.90013 0.86918 0.87926 0.89247 0.87898 0.90365 0.89636 0.89059 0.90709 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.56 113.37 1.20 1.51 16 2 O -0.33 -7.10 5.26 -51.39 -0.27 -7.37 16 3 C 0.50 13.00 7.05 71.24 0.50 13.50 16 4 O -0.53 -15.55 15.10 21.98 0.33 -15.21 16 5 C 0.09 2.26 1.13 3.31 0.00 2.26 16 6 N -0.50 -14.54 4.67 -823.02 -3.84 -18.39 16 7 C 0.07 2.31 3.66 86.31 0.32 2.62 16 8 C -0.09 -3.83 4.08 30.60 0.12 -3.70 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.54 -30.66 9.11 25.60 0.23 -30.42 16 11 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 12 C 0.00 0.08 5.46 84.66 0.46 0.54 16 13 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 14 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 C 0.00 0.02 3.42 44.91 0.15 0.17 16 19 C -0.11 -2.51 7.50 30.62 0.23 -2.28 16 20 C -0.19 -4.90 8.48 30.62 0.26 -4.64 16 21 C -0.15 -3.53 6.95 31.12 0.22 -3.31 16 22 C -0.13 -2.78 7.69 31.12 0.24 -2.54 16 23 C -0.12 -3.01 6.88 31.12 0.21 -2.79 16 24 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 26 H 0.06 0.89 8.13 -2.38 -0.02 0.87 16 27 H 0.07 2.49 5.69 -2.39 -0.01 2.47 16 28 H 0.04 1.25 6.82 -2.39 -0.02 1.24 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 2.66 5.18 -2.39 -0.01 2.64 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.11 1.93 7.98 -2.39 -0.02 1.91 16 37 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.09 2.79 6.08 -2.39 -0.01 2.78 16 39 H 0.10 2.46 5.89 -2.39 -0.01 2.44 16 40 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 41 H 0.09 1.88 7.60 -2.39 -0.02 1.86 16 42 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.07 1.99 7.65 -2.38 -0.02 1.97 16 44 H 0.10 2.63 5.99 -2.39 -0.01 2.62 16 Total: -1.00 -65.95 340.54 3.81 -62.14 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.97 Total: 16.40 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 4.30 Total: -27.50 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -3.56 Total: -74.81 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.06 Total: -22.59 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -65.95 3.81 -62.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595538501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.558 kcal (2) G-P(sol) polarization free energy of solvation -65.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds