Wall clock time and date at job start Tue Mar 31 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00519 * 2 1 4 4 O 1.20827 * 119.99816 * 4.16264 * 3 2 1 5 5 C 1.50694 * 120.00279 * 184.16461 * 3 2 1 6 6 C 1.53002 * 109.47187 * 173.88309 * 5 3 2 7 7 C 1.53006 * 115.54944 * 294.50939 * 6 5 3 8 8 N 1.46899 * 109.46779 * 268.21680 * 7 6 5 9 9 C 1.46847 * 111.00149 * 48.52822 * 8 7 6 10 10 C 1.53177 * 109.55286 * 185.84100 * 9 8 7 11 11 C 1.53126 * 109.20505 * 300.85474 * 10 9 8 12 12 C 1.53121 * 109.21066 * 57.62753 * 11 10 9 13 13 H 1.08998 * 109.50146 * 62.25586 * 12 11 10 14 14 C 1.50701 * 109.49785 * 182.37033 * 12 11 10 15 15 H 1.08003 * 119.99848 * 120.00773 * 14 12 11 16 16 C 1.37875 * 120.00163 * 299.99660 * 14 12 11 17 17 N 1.31515 * 120.00070 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99851 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47092 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46839 * 120.00826 * 18 16 14 21 21 H 1.48499 * 109.46904 * 240.00321 * 18 16 14 22 22 C 1.46850 * 110.99521 * 172.73444 * 8 7 6 23 23 C 1.52999 * 117.52014 * 80.21002 * 6 5 3 24 24 C 1.52995 * 60.00184 * 107.48344 * 23 6 5 25 25 H 1.09008 * 109.47233 * 59.02395 * 1 2 3 26 26 H 1.09002 * 109.47276 * 179.02144 * 1 2 3 27 27 H 1.08995 * 109.46776 * 299.02571 * 1 2 3 28 28 H 1.08998 * 109.47531 * 53.88329 * 5 3 2 29 29 H 1.09000 * 109.47011 * 293.87971 * 5 3 2 30 30 H 1.08995 * 109.47180 * 148.21358 * 7 6 5 31 31 H 1.09003 * 109.46916 * 28.21572 * 7 6 5 32 32 H 1.08995 * 109.45829 * 305.84811 * 9 8 7 33 33 H 1.08999 * 109.46318 * 65.82206 * 9 8 7 34 34 H 1.09001 * 109.58647 * 180.91182 * 10 9 8 35 35 H 1.08994 * 109.49238 * 60.74341 * 10 9 8 36 36 H 1.08995 * 109.52314 * 297.69203 * 11 10 9 37 37 H 1.09003 * 109.51838 * 177.56596 * 11 10 9 38 38 H 0.96995 * 119.99773 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.45961 * 54.14761 * 22 8 7 40 40 H 1.08991 * 109.45611 * 294.16826 * 22 8 7 41 41 H 1.09003 * 117.49674 * 214.97362 * 23 6 5 42 42 H 1.09003 * 117.49645 * 359.97438 * 23 6 5 43 43 H 1.08999 * 117.50088 * 252.51677 * 24 23 6 44 44 H 1.09000 * 117.50417 * 107.48954 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4059 2.2080 0.0760 5 6 3.5633 1.2763 -0.0948 6 6 3.9883 2.7400 -0.2281 7 6 3.5486 3.4402 -1.5155 8 7 4.6010 3.3035 -2.5312 9 6 5.0546 1.9107 -2.6348 10 6 6.2468 1.8298 -3.5932 11 6 5.8238 2.3535 -4.9686 12 6 5.3102 3.7888 -4.8251 13 1 6.1137 4.4280 -4.4592 14 6 4.8378 4.2904 -6.1653 15 1 3.8109 4.5986 -6.2953 16 6 5.7167 4.3561 -7.2257 17 7 6.9671 3.9806 -7.0676 18 14 5.1312 4.9785 -8.8868 19 1 3.6925 5.3363 -8.8024 20 1 5.9176 6.1783 -9.2710 21 1 5.3185 3.9163 -9.9075 22 6 4.1463 3.8120 -3.8316 23 6 4.0422 3.5797 1.0498 24 6 5.3394 3.1405 0.3678 25 1 -0.3634 0.5290 -0.8812 26 1 -0.3634 -1.0275 -0.0176 27 1 -0.3633 0.4986 0.8986 28 1 3.9027 0.7185 -0.9676 29 1 4.0074 0.8494 0.8045 30 1 3.3741 4.4969 -1.3129 31 1 2.6289 2.9837 -1.8814 32 1 5.3556 1.5527 -1.6503 33 1 4.2417 1.2912 -3.0136 34 1 6.5737 0.7939 -3.6831 35 1 7.0650 2.4382 -3.2080 36 1 5.0321 1.7218 -5.3711 37 1 6.6801 2.3386 -5.6430 38 1 7.5854 4.0272 -7.8134 39 1 3.7877 4.8348 -3.7164 40 1 3.3379 3.1835 -4.2047 41 1 3.7643 4.6309 0.9733 42 1 3.7744 3.0894 1.9858 43 1 5.9253 2.3612 0.8551 44 1 5.9151 3.9027 -0.1574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:00 Heat of formation + Delta-G solvation = -64.199789 kcal Electronic energy + Delta-G solvation = -23171.330924 eV Core-core repulsion = 19896.305714 eV Total energy + Delta-G solvation = -3275.025210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72260 -38.99565 -37.08946 -36.24485 -33.37804 -31.50572 -30.53826 -29.70672 -27.48741 -26.20244 -24.92489 -22.44970 -22.20607 -21.55501 -21.04364 -18.83169 -18.55261 -17.66778 -16.69111 -16.59522 -16.22224 -15.31736 -14.91329 -14.68852 -14.41528 -13.83284 -13.52936 -13.50914 -13.26986 -12.99250 -12.52529 -12.28940 -12.26865 -12.02065 -11.76725 -11.53123 -11.36837 -11.01603 -10.94610 -10.91710 -10.72312 -10.58664 -10.51065 -10.13200 -10.03318 -9.79710 -9.77696 -9.41110 -8.94138 -8.65418 -8.26829 -7.56565 -5.94467 -4.00280 2.14310 2.58378 3.31695 3.39734 3.43763 3.82895 4.44406 4.52082 4.66652 4.69719 4.85971 4.92461 4.93512 5.00510 5.18007 5.33447 5.35643 5.42185 5.49345 5.71354 5.74897 5.81359 5.90795 6.04379 6.09840 6.13490 6.25543 6.28818 6.33103 6.37435 6.46881 6.56710 6.76715 6.79933 7.02414 7.26564 7.44876 7.68465 7.73642 7.79493 7.89089 8.13068 8.21613 8.52538 9.04044 9.63918 11.11435 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022717 B = 0.004158 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.279731 B = 6732.891433 C = 7167.334706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.495 6.495 5 C -0.085 4.085 6 C -0.116 4.116 7 C 0.096 3.904 8 N -0.533 5.533 9 C 0.058 3.942 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.056 3.944 13 H 0.034 0.966 14 C -0.513 4.513 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.067 3.933 23 C -0.162 4.162 24 C -0.148 4.148 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.017 0.983 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.028 0.972 37 H 0.090 0.910 38 H 0.258 0.742 39 H 0.058 0.942 40 H 0.017 0.983 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 -7.856 16.071 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.302 3.698 4 O -0.381 6.381 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.032 4.032 8 N -0.258 5.258 9 C -0.070 4.070 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.037 3.963 13 H 0.052 0.948 14 C -0.552 4.552 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.059 4.059 23 C -0.200 4.200 24 C -0.185 4.185 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.303 -7.282 16.142 18.796 hybrid contribution -1.329 -0.206 -1.242 1.830 sum -7.631 -7.488 14.900 18.339 Atomic orbital electron populations 1.23231 0.76535 1.03503 1.02515 1.86506 1.23336 1.33897 1.84479 1.23848 0.92175 0.81239 0.72561 1.90672 1.67079 1.36211 1.44168 1.21224 0.87478 0.97671 1.05847 1.21054 1.02574 0.92498 0.95550 1.21551 0.92563 0.99634 0.89416 1.62107 1.36077 1.19659 1.07955 1.22230 0.97097 0.88769 0.98885 1.21703 0.96980 0.99187 0.97635 1.21648 1.01699 0.97564 0.93963 1.18654 0.92448 0.93338 0.91876 0.94758 1.21203 0.96328 1.42630 0.95046 0.92877 1.24925 0.94875 0.95357 0.98659 1.69902 1.03597 1.47962 1.31272 0.86590 0.78852 0.78516 0.84345 1.19897 1.21048 1.21124 1.22299 0.98470 0.97789 0.87387 1.23007 1.01699 1.00315 0.94966 1.23004 0.89905 1.03568 1.02010 0.91908 0.88258 0.92015 0.86832 0.87634 0.90788 0.95189 0.91537 0.96508 0.93695 0.92079 0.95334 0.89168 0.93170 0.92395 0.96517 0.88582 0.89429 0.89106 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.37 -4.26 10.56 -39.24 -0.41 -4.68 16 3 C 0.46 5.95 7.49 36.00 0.27 6.22 16 4 O -0.50 -7.64 14.73 -18.75 -0.28 -7.92 16 5 C -0.08 -0.96 5.16 -27.88 -0.14 -1.10 16 6 C -0.12 -1.50 0.26 -154.50 -0.04 -1.54 16 7 C 0.10 1.56 4.87 -3.82 -0.02 1.54 16 8 N -0.53 -9.83 4.56 -234.58 -1.07 -10.90 16 9 C 0.06 1.00 4.02 -3.76 -0.02 0.98 16 10 C -0.12 -2.26 6.11 -26.57 -0.16 -2.42 16 11 C -0.11 -2.63 5.02 -26.60 -0.13 -2.76 16 12 C 0.06 1.40 2.27 -91.69 -0.21 1.20 16 13 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 14 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 15 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.43 11.35 55.43 0.63 -24.80 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 C 0.07 1.47 4.67 -3.83 -0.02 1.45 16 23 C -0.16 -1.87 9.78 -26.73 -0.26 -2.13 16 24 C -0.15 -1.72 8.93 -26.73 -0.24 -1.96 16 25 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.11 1.29 5.64 -51.93 -0.29 1.00 16 29 H 0.11 0.92 8.09 -51.93 -0.42 0.50 16 30 H 0.07 1.22 7.87 -51.93 -0.41 0.81 16 31 H 0.03 0.53 6.89 -51.93 -0.36 0.17 16 32 H 0.07 0.96 4.77 -51.93 -0.25 0.72 16 33 H 0.02 0.30 7.88 -51.93 -0.41 -0.11 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 1.13 8.03 -51.93 -0.42 0.72 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -30.18 344.08 -8.74 -38.92 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.49 Total: -0.22 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -0.29 Total: -12.00 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.44 Total: -35.70 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.69 Total: -12.60 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.18 -8.74 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.277 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds