Wall clock time and date at job start Tue Mar 31 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47485 * 2 1 4 4 C 1.42900 * 114.00130 * 180.89067 * 3 2 1 5 5 C 1.53003 * 109.47150 * 179.68319 * 4 3 2 6 6 C 1.50706 * 115.54923 * 295.64906 * 5 4 3 7 7 O 1.21283 * 119.99388 * 113.50147 * 6 5 4 8 8 N 1.34775 * 119.99724 * 293.50172 * 6 5 4 9 9 C 1.46955 * 120.65884 * 354.58139 * 8 6 5 10 10 C 1.53187 * 108.88873 * 233.53831 * 9 8 6 11 11 C 1.53041 * 109.31365 * 305.44079 * 10 9 8 12 12 C 1.53044 * 109.53570 * 61.36277 * 11 10 9 13 13 H 1.08992 * 109.49505 * 58.59168 * 12 11 10 14 14 C 1.50703 * 109.49427 * 178.68521 * 12 11 10 15 15 H 1.08004 * 119.99917 * 119.83990 * 14 12 11 16 16 C 1.37874 * 120.00152 * 299.84076 * 14 12 11 17 17 N 1.31513 * 120.00221 * 359.97438 * 16 14 12 18 18 Si 1.86808 * 119.99908 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46996 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47115 * 120.00221 * 18 16 14 21 21 H 1.48505 * 109.46763 * 239.99538 * 18 16 14 22 22 C 1.46929 * 120.62415 * 174.76438 * 8 6 5 23 23 C 1.52999 * 117.49945 * 81.31966 * 5 4 3 24 24 C 1.52999 * 117.49936 * 149.97865 * 5 4 3 25 25 H 1.08998 * 109.47239 * 302.97157 * 1 2 3 26 26 H 1.08998 * 109.46889 * 62.96900 * 1 2 3 27 27 H 1.09003 * 109.47338 * 182.96805 * 1 2 3 28 28 H 1.09004 * 109.47140 * 239.99579 * 2 1 3 29 29 H 1.09006 * 109.46956 * 119.99905 * 2 1 3 30 30 H 1.09000 * 109.46877 * 59.68418 * 4 3 2 31 31 H 1.08997 * 109.47270 * 299.68340 * 4 3 2 32 32 H 1.08997 * 109.46831 * 113.75108 * 9 8 6 33 33 H 1.09005 * 109.70788 * 353.46668 * 9 8 6 34 34 H 1.08999 * 109.50119 * 185.49039 * 10 9 8 35 35 H 1.09003 * 109.50080 * 65.39162 * 10 9 8 36 36 H 1.09004 * 109.45892 * 301.35058 * 11 10 9 37 37 H 1.08993 * 109.46352 * 181.38600 * 11 10 9 38 38 H 0.96997 * 120.00348 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.59267 * 6.60054 * 22 8 6 40 40 H 1.09009 * 109.58580 * 246.31950 * 22 8 6 41 41 H 1.09003 * 117.49913 * 215.00492 * 23 5 4 42 42 H 1.09000 * 117.49955 * 0.02562 * 23 5 4 43 43 H 1.09003 * 117.49743 * 359.97438 * 24 5 4 44 44 H 1.08999 * 117.49634 * 144.97505 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4307 1.4600 -0.0203 5 6 3.8252 2.9383 -0.0264 6 6 3.4068 3.7177 -1.2465 7 8 2.5808 4.6003 -1.1484 8 7 3.9505 3.4338 -2.4466 9 6 5.0364 2.4505 -2.5636 10 6 6.2141 3.0974 -3.2992 11 6 5.7281 3.6593 -4.6372 12 6 4.6667 4.7330 -4.3862 13 1 5.0898 5.5255 -3.7690 14 6 4.2122 5.3083 -5.7028 15 1 3.1752 5.2339 -5.9954 16 6 5.1201 5.9297 -6.5338 17 7 6.3827 6.0208 -6.1773 18 14 4.5565 6.6435 -8.1655 19 1 3.0988 6.4124 -8.3298 20 1 4.8327 8.1024 -8.1894 21 1 5.2902 5.9826 -9.2747 22 6 3.4715 4.1046 -3.6629 23 6 3.8286 3.6741 1.3150 24 6 5.1522 3.3181 0.6337 25 1 -0.3633 0.5593 0.8621 26 1 -0.3633 0.4670 -0.9154 27 1 -0.3634 -1.0263 0.0532 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 3.8208 0.9762 -0.9158 31 1 3.8461 0.9768 0.8640 32 1 4.6845 1.5859 -3.1264 33 1 5.3550 2.1348 -1.5701 34 1 6.9866 2.3496 -3.4778 35 1 6.6226 3.9054 -2.6922 36 1 5.2971 2.8552 -5.2337 37 1 6.5691 4.0985 -5.1736 38 1 7.0214 6.4583 -6.7617 39 1 2.7569 4.8825 -3.3940 40 1 2.9904 3.3767 -4.3163 41 1 3.5281 4.7219 1.3151 42 1 3.5501 3.1050 2.2020 43 1 5.7440 2.5148 1.0727 44 1 5.7227 4.1314 0.1852 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:02 Heat of formation + Delta-G solvation = -66.864335 kcal Electronic energy + Delta-G solvation = -23253.465666 eV Core-core repulsion = 19978.324912 eV Total energy + Delta-G solvation = -3275.140754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15239 -38.08544 -36.96145 -35.99000 -33.40917 -31.46201 -31.25989 -30.20862 -27.19776 -25.15819 -24.96696 -22.96380 -22.41407 -22.11886 -21.62166 -19.38798 -18.07858 -17.15340 -16.44054 -16.26415 -15.96003 -15.37802 -15.19548 -14.69998 -14.06089 -14.00541 -13.46227 -13.40896 -13.13825 -12.87759 -12.71489 -12.64543 -12.11632 -11.99518 -11.86521 -11.61534 -11.56068 -11.29477 -10.99491 -10.83748 -10.71113 -10.58587 -10.33198 -10.17639 -9.94399 -9.76786 -9.67263 -9.42090 -9.15616 -8.78883 -8.37636 -7.83667 -6.00948 -4.07694 3.02241 3.26178 3.29550 3.37715 3.42085 3.56631 3.97900 4.43661 4.59140 4.73828 4.81792 4.89827 4.99196 5.07545 5.20965 5.23966 5.28592 5.40955 5.48475 5.53524 5.56842 5.66684 5.70575 5.77347 5.84201 5.90674 5.99652 6.11861 6.15216 6.35258 6.43457 6.50665 6.69344 6.83909 7.02826 7.11197 7.19385 7.35573 7.70650 7.94011 8.07589 8.09342 8.39495 8.74284 8.96396 9.57175 11.04687 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.004395 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.077576 B = 6369.241955 C = 6769.601070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.378 6.378 4 C 0.106 3.894 5 C -0.157 4.157 6 C 0.552 3.448 7 O -0.542 6.542 8 N -0.599 5.599 9 C 0.111 3.889 10 C -0.134 4.134 11 C -0.112 4.112 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.512 4.512 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.118 3.882 23 C -0.137 4.137 24 C -0.154 4.154 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.095 0.905 38 H 0.259 0.741 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 -13.140 13.338 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.297 6.297 4 C 0.029 3.971 5 C -0.160 4.160 6 C 0.338 3.662 7 O -0.420 6.420 8 N -0.331 5.331 9 C -0.013 4.013 10 C -0.172 4.172 11 C -0.150 4.150 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.551 4.551 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.003 4.003 23 C -0.174 4.174 24 C -0.191 4.191 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.372 -12.442 13.300 18.366 hybrid contribution 0.062 0.016 -1.020 1.022 sum -2.309 -12.426 12.280 17.622 Atomic orbital electron populations 1.21727 0.93716 1.01965 1.03414 1.22449 0.95784 0.83935 0.99802 1.88011 1.20423 1.26002 1.95292 1.21908 0.82073 0.92505 1.00570 1.21301 1.04082 0.95570 0.95033 1.19195 0.81137 0.82746 0.83076 1.90648 1.34043 1.32087 1.85174 1.48177 1.35791 1.41683 1.07406 1.21754 0.88149 0.91107 1.00255 1.21996 0.95911 0.99654 0.99644 1.21626 1.02294 0.97654 0.93423 1.18969 0.90517 0.93478 0.94933 0.95269 1.21126 0.95015 1.36279 1.02690 0.92439 1.24932 0.94898 0.95789 0.98185 1.69882 1.02080 1.43697 1.37168 0.86531 0.78915 0.78832 0.83705 1.19723 1.21022 1.21064 1.21984 0.99129 0.96108 0.83074 1.22951 0.99002 1.01918 0.93561 1.23131 0.89852 1.03733 1.02364 0.91803 0.91721 0.91252 0.93441 0.93634 0.92291 0.92632 0.92391 0.90991 0.92521 0.92380 0.94635 0.88668 0.93067 0.90377 0.92804 0.87675 0.88092 0.87856 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.15 0.38 -1.06 16 2 C 0.06 0.60 6.66 37.15 0.25 0.84 16 3 O -0.38 -5.41 10.26 -35.23 -0.36 -5.77 16 4 C 0.11 1.31 5.42 37.16 0.20 1.51 16 5 C -0.16 -2.27 1.01 -155.66 -0.16 -2.43 16 6 C 0.55 10.76 6.87 -10.98 -0.08 10.68 16 7 O -0.54 -12.73 16.14 5.55 0.09 -12.64 16 8 N -0.60 -11.60 2.98 -172.74 -0.51 -12.12 16 9 C 0.11 1.76 5.28 -3.70 -0.02 1.74 16 10 C -0.13 -2.38 6.08 -26.61 -0.16 -2.55 16 11 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 12 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 13 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.51 -14.05 8.56 -34.44 -0.29 -14.34 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.12 2.65 5.66 -3.71 -0.02 2.63 16 23 C -0.14 -1.74 9.78 -26.69 -0.26 -2.01 16 24 C -0.15 -1.77 8.99 -26.70 -0.24 -2.01 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.69 6.45 -51.93 -0.33 0.36 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.94 4.87 -51.93 -0.25 0.69 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 2.42 6.05 -51.93 -0.31 2.11 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.08 1.90 7.00 -51.93 -0.36 1.54 16 40 H 0.05 1.18 8.14 -51.92 -0.42 0.75 16 41 H 0.10 1.50 8.01 -51.93 -0.42 1.09 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -31.75 349.20 -8.31 -40.06 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.56 Total: 0.59 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.83 Total: -7.19 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.11 Total: -36.55 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.27 Total: -18.41 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.75 -8.31 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.800 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds