Wall clock time and date at job start Tue Mar 31 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00242 * 2 1 4 4 C 1.53001 * 109.47422 * 179.97438 * 3 2 1 5 5 C 1.50705 * 112.84655 * 294.71597 * 4 3 2 6 6 O 1.21281 * 119.99860 * 109.98783 * 5 4 3 7 7 N 1.34777 * 119.99861 * 289.98589 * 5 4 3 8 8 C 1.46926 * 120.62933 * 3.14931 * 7 5 4 9 9 C 1.53186 * 108.77396 * 126.37074 * 8 7 5 10 10 C 1.53042 * 109.31544 * 54.63298 * 9 8 7 11 11 C 1.53045 * 109.53370 * 298.63321 * 10 9 8 12 12 H 1.09000 * 109.49615 * 301.40968 * 11 10 9 13 13 C 1.50701 * 109.49402 * 181.35031 * 11 10 9 14 14 H 1.08001 * 119.99825 * 239.99988 * 13 11 10 15 15 C 1.37879 * 120.00253 * 60.00044 * 13 11 10 16 16 N 1.31513 * 119.99780 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00035 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47024 * 90.00503 * 17 15 13 19 19 H 1.48497 * 109.46764 * 209.99963 * 17 15 13 20 20 H 1.48490 * 109.47042 * 330.00025 * 17 15 13 21 21 C 1.46925 * 120.62692 * 182.86695 * 7 5 4 22 22 C 1.53781 * 113.61249 * 65.91037 * 4 3 2 23 23 C 1.53956 * 87.02037 * 89.23420 * 22 4 3 24 24 C 1.53778 * 87.11225 * 25.35734 * 23 22 4 25 25 H 1.09004 * 109.46766 * 60.00532 * 1 2 3 26 26 H 1.08995 * 109.47118 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47405 * 300.00751 * 1 2 3 28 28 H 1.08994 * 109.47615 * 59.99203 * 3 2 1 29 29 H 1.09006 * 109.46668 * 299.99734 * 3 2 1 30 30 H 1.09001 * 109.58210 * 246.15568 * 8 7 5 31 31 H 1.08992 * 109.58940 * 6.57916 * 8 7 5 32 32 H 1.09002 * 109.49770 * 174.58557 * 9 8 7 33 33 H 1.09001 * 109.49931 * 294.64602 * 9 8 7 34 34 H 1.08992 * 109.46258 * 58.65489 * 10 9 8 35 35 H 1.09001 * 109.45611 * 178.61725 * 10 9 8 36 36 H 0.97000 * 120.00126 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.58694 * 353.41606 * 21 7 5 38 38 H 1.09000 * 109.58329 * 113.84629 * 21 7 5 39 39 H 1.09008 * 113.61086 * 203.74808 * 22 4 3 40 40 H 1.08997 * 113.61701 * 334.65207 * 22 4 3 41 41 H 1.09007 * 113.53335 * 270.80758 * 23 22 4 42 42 H 1.08999 * 113.67149 * 139.92838 * 23 22 4 43 43 H 1.08993 * 113.61969 * 220.09444 * 24 23 22 44 44 H 1.09002 * 113.68704 * 89.20013 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0724 0.5598 1.2626 6 8 4.5523 -0.5536 1.2312 7 7 4.0193 1.2383 2.4259 8 6 3.3793 2.5591 2.4936 9 6 2.3254 2.5399 3.6051 10 6 2.9784 2.0900 4.9141 11 6 3.5323 0.6729 4.7490 12 1 2.7238 -0.0037 4.4720 13 6 4.1457 0.2182 6.0483 14 1 5.1915 -0.0483 6.0876 15 6 3.3717 0.1424 7.1869 16 7 2.0980 0.4665 7.1389 17 14 4.1319 -0.4219 8.7972 18 1 4.6600 0.7541 9.5342 19 1 3.0992 -1.0997 9.6213 20 1 5.2408 -1.3687 8.5160 21 6 4.5950 0.6685 3.6517 22 6 4.1047 0.5625 -1.2853 23 6 4.1671 1.9919 -1.8536 24 6 4.2564 2.4829 -0.3991 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6886 1.8465 0.8898 29 1 1.6886 1.8463 -0.8901 30 1 4.1299 3.3179 2.7148 31 1 2.9008 2.7826 1.5401 32 1 1.9105 3.5400 3.7305 33 1 1.5281 1.8461 3.3385 34 1 3.7914 2.7705 5.1670 35 1 2.2360 2.0991 5.7121 36 1 1.5534 0.4128 7.9398 37 1 4.9182 -0.3551 3.4621 38 1 5.4467 1.2700 3.9693 39 1 5.0839 0.1027 -1.1516 40 1 3.3995 -0.0851 -1.8063 41 1 3.2530 2.2983 -2.3625 42 1 5.0653 2.1918 -2.4379 43 1 3.6735 3.3833 -0.2055 44 1 5.2767 2.5497 -0.0213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:33 Heat of formation + Delta-G solvation = -64.274554 kcal Electronic energy + Delta-G solvation = -23849.228402 eV Core-core repulsion = 20574.199950 eV Total energy + Delta-G solvation = -3275.028452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73989 -38.16496 -37.11056 -36.40247 -33.45263 -31.29072 -30.44964 -28.88283 -26.45566 -25.70435 -25.00656 -24.94317 -23.46222 -21.64655 -20.49534 -18.90845 -18.11998 -17.09692 -16.36290 -16.21557 -15.91465 -15.41228 -15.12607 -14.66219 -14.38082 -14.05620 -13.66613 -13.40471 -12.93085 -12.77271 -12.56521 -12.36419 -12.30332 -11.98942 -11.95216 -11.81787 -11.30763 -11.13021 -10.95981 -10.81125 -10.70562 -10.48046 -10.38707 -10.25519 -9.94179 -9.76753 -9.63657 -9.40183 -9.03103 -8.76137 -8.36221 -7.81897 -6.00014 -4.06830 3.13836 3.30719 3.37545 3.41595 3.53123 3.70846 4.40612 4.44283 4.63555 4.66906 4.82810 4.98599 5.16243 5.23463 5.29944 5.34846 5.36995 5.44682 5.50767 5.62013 5.65128 5.70015 5.73247 5.76908 5.82180 6.05637 6.13842 6.14239 6.33286 6.34159 6.43946 6.51801 6.69318 6.85760 7.04627 7.15174 7.20003 7.36232 7.71171 7.96000 8.09298 8.11242 8.40411 8.77570 8.97170 9.57844 11.05562 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004881 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.576782 B = 5735.191977 C = 6005.007596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.084 3.916 4 C -0.105 4.105 5 C 0.530 3.470 6 O -0.544 6.544 7 N -0.601 5.601 8 C 0.104 3.896 9 C -0.136 4.136 10 C -0.111 4.111 11 C 0.040 3.960 12 H 0.029 0.971 13 C -0.512 4.512 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.118 3.882 22 C -0.105 4.105 23 C -0.143 4.143 24 C -0.120 4.120 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.095 0.905 36 H 0.260 0.740 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 7.555 -15.938 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C 0.007 3.993 4 C -0.108 4.108 5 C 0.317 3.683 6 O -0.421 6.421 7 N -0.333 5.333 8 C -0.019 4.019 9 C -0.174 4.174 10 C -0.149 4.149 11 C 0.021 3.979 12 H 0.047 0.953 13 C -0.551 4.551 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.003 4.003 22 C -0.143 4.143 23 C -0.181 4.181 24 C -0.158 4.158 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.447 6.796 -15.819 17.278 hybrid contribution -0.032 0.054 1.100 1.102 sum -1.479 6.850 -14.719 16.302 Atomic orbital electron populations 1.22745 0.81003 1.02938 0.99780 1.87981 1.19521 1.26881 1.95303 1.22372 0.90428 0.85628 1.00843 1.22048 0.94752 0.98956 0.95087 1.20027 0.78902 0.85309 0.84041 1.90637 1.46747 1.18980 1.85740 1.48225 1.56947 1.18979 1.09188 1.21906 0.95891 0.84560 0.99519 1.22020 0.97609 1.00286 0.97486 1.21614 1.00384 0.97694 0.95205 1.18882 0.93517 0.93572 0.91960 0.95311 1.21083 0.96235 1.44432 0.93350 0.92515 1.24931 0.94780 0.95167 0.98919 1.69874 1.05699 1.48547 1.28728 0.86581 0.79002 0.78856 0.83509 1.20714 1.21259 1.19852 1.21873 0.96996 0.98469 0.82976 1.22744 1.02035 0.96068 0.93430 1.22926 1.02171 0.97006 0.95962 1.22988 1.01070 0.95302 0.96403 0.94349 0.89536 0.93817 0.91868 0.92517 0.92083 0.90837 0.92583 0.92553 0.94611 0.88671 0.93033 0.90402 0.92885 0.89180 0.90524 0.90099 0.90978 0.90558 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.92 10.38 -35.23 -0.37 -6.28 16 3 C 0.08 1.11 4.74 37.16 0.18 1.29 16 4 C -0.11 -1.50 0.42 -154.85 -0.06 -1.56 16 5 C 0.53 10.22 6.53 -10.98 -0.07 10.14 16 6 O -0.54 -12.65 15.67 5.56 0.09 -12.56 16 7 N -0.60 -11.56 2.98 -173.04 -0.52 -12.07 16 8 C 0.10 1.64 5.16 -3.71 -0.02 1.62 16 9 C -0.14 -2.44 6.07 -26.61 -0.16 -2.60 16 10 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 11 C 0.04 1.00 2.24 -91.87 -0.21 0.80 16 12 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 13 C -0.51 -14.09 8.57 -34.44 -0.29 -14.39 16 14 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.19 11.31 55.43 0.63 -24.57 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.12 2.64 5.64 -3.94 -0.02 2.62 16 22 C -0.10 -1.37 6.83 -25.83 -0.18 -1.54 16 23 C -0.14 -1.36 7.74 -25.83 -0.20 -1.56 16 24 C -0.12 -1.29 5.85 -25.92 -0.15 -1.45 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.84 5.79 -51.93 -0.30 0.54 16 29 H 0.06 0.58 7.32 -51.93 -0.38 0.20 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.95 3.18 -51.93 -0.17 0.78 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 2.44 6.04 -51.93 -0.31 2.12 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.08 1.90 7.00 -51.93 -0.36 1.54 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.28 7.80 -51.92 -0.41 0.88 16 40 H 0.08 1.01 7.99 -51.93 -0.41 0.59 16 41 H 0.08 0.66 7.61 -51.92 -0.40 0.26 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.68 7.34 -51.93 -0.38 0.30 16 44 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -31.86 337.88 -7.71 -39.57 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.31 Total: 0.66 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -0.31 Total: -6.14 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.11 Total: -36.64 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.28 Total: -18.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.86 -7.71 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.703 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds