Wall clock time and date at job start Tue Mar 31 2020 06:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00242 * 2 1 4 4 C 1.53001 * 109.47422 * 179.97438 * 3 2 1 5 5 C 1.50705 * 112.84655 * 294.71597 * 4 3 2 6 6 O 1.21281 * 119.99860 * 109.98783 * 5 4 3 7 7 N 1.34777 * 119.99861 * 289.98589 * 5 4 3 8 8 C 1.46926 * 120.62933 * 3.14931 * 7 5 4 9 9 C 1.53186 * 108.77396 * 126.37074 * 8 7 5 10 10 C 1.53042 * 109.31544 * 54.63298 * 9 8 7 11 11 C 1.53045 * 109.53370 * 298.63321 * 10 9 8 12 12 H 1.09000 * 109.49615 * 301.40968 * 11 10 9 13 13 C 1.50701 * 109.49402 * 181.35031 * 11 10 9 14 14 H 1.08001 * 119.99825 * 239.99988 * 13 11 10 15 15 C 1.37879 * 120.00253 * 60.00044 * 13 11 10 16 16 N 1.31513 * 119.99780 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00035 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47024 * 90.00503 * 17 15 13 19 19 H 1.48497 * 109.46764 * 209.99963 * 17 15 13 20 20 H 1.48490 * 109.47042 * 330.00025 * 17 15 13 21 21 C 1.46925 * 120.62692 * 182.86695 * 7 5 4 22 22 C 1.53781 * 113.61249 * 65.91037 * 4 3 2 23 23 C 1.53956 * 87.02037 * 89.23420 * 22 4 3 24 24 C 1.53778 * 87.11225 * 25.35734 * 23 22 4 25 25 H 1.09004 * 109.46766 * 60.00532 * 1 2 3 26 26 H 1.08995 * 109.47118 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47405 * 300.00751 * 1 2 3 28 28 H 1.08994 * 109.47615 * 59.99203 * 3 2 1 29 29 H 1.09006 * 109.46668 * 299.99734 * 3 2 1 30 30 H 1.09001 * 109.58210 * 246.15568 * 8 7 5 31 31 H 1.08992 * 109.58940 * 6.57916 * 8 7 5 32 32 H 1.09002 * 109.49770 * 174.58557 * 9 8 7 33 33 H 1.09001 * 109.49931 * 294.64602 * 9 8 7 34 34 H 1.08992 * 109.46258 * 58.65489 * 10 9 8 35 35 H 1.09001 * 109.45611 * 178.61725 * 10 9 8 36 36 H 0.97000 * 120.00126 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.58694 * 353.41606 * 21 7 5 38 38 H 1.09000 * 109.58329 * 113.84629 * 21 7 5 39 39 H 1.09008 * 113.61086 * 203.74808 * 22 4 3 40 40 H 1.08997 * 113.61701 * 334.65207 * 22 4 3 41 41 H 1.09007 * 113.53335 * 270.80758 * 23 22 4 42 42 H 1.08999 * 113.67149 * 139.92838 * 23 22 4 43 43 H 1.08993 * 113.61969 * 220.09444 * 24 23 22 44 44 H 1.09002 * 113.68704 * 89.20013 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0724 0.5598 1.2626 6 8 4.5523 -0.5536 1.2312 7 7 4.0193 1.2383 2.4259 8 6 3.3793 2.5591 2.4936 9 6 2.3254 2.5399 3.6051 10 6 2.9784 2.0900 4.9141 11 6 3.5323 0.6729 4.7490 12 1 2.7238 -0.0037 4.4720 13 6 4.1457 0.2182 6.0483 14 1 5.1915 -0.0483 6.0876 15 6 3.3717 0.1424 7.1869 16 7 2.0980 0.4665 7.1389 17 14 4.1319 -0.4219 8.7972 18 1 4.6600 0.7541 9.5342 19 1 3.0992 -1.0997 9.6213 20 1 5.2408 -1.3687 8.5160 21 6 4.5950 0.6685 3.6517 22 6 4.1047 0.5625 -1.2853 23 6 4.1671 1.9919 -1.8536 24 6 4.2564 2.4829 -0.3991 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6886 1.8465 0.8898 29 1 1.6886 1.8463 -0.8901 30 1 4.1299 3.3179 2.7148 31 1 2.9008 2.7826 1.5401 32 1 1.9105 3.5400 3.7305 33 1 1.5281 1.8461 3.3385 34 1 3.7914 2.7705 5.1670 35 1 2.2360 2.0991 5.7121 36 1 1.5534 0.4128 7.9398 37 1 4.9182 -0.3551 3.4621 38 1 5.4467 1.2700 3.9693 39 1 5.0839 0.1027 -1.1516 40 1 3.3995 -0.0851 -1.8063 41 1 3.2530 2.2983 -2.3625 42 1 5.0653 2.1918 -2.4379 43 1 3.6735 3.3833 -0.2055 44 1 5.2767 2.5497 -0.0213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:32 Heat of formation + Delta-G solvation = -84.889855 kcal Electronic energy + Delta-G solvation = -23850.122349 eV Core-core repulsion = 20574.199950 eV Total energy + Delta-G solvation = -3275.922399 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.98245 -39.52690 -38.37744 -37.80512 -35.37387 -33.05110 -32.16573 -29.97342 -27.64571 -26.92651 -26.60236 -26.25657 -24.65974 -23.33739 -21.97383 -20.31993 -19.46291 -18.56852 -18.09205 -17.42688 -17.08009 -16.76225 -16.56001 -16.28968 -15.58437 -15.34574 -15.10258 -15.03710 -14.64451 -14.39222 -13.85625 -13.69840 -13.42290 -13.31302 -13.19782 -12.90992 -12.85509 -12.72126 -12.57974 -12.26305 -12.10867 -11.90671 -11.86321 -11.64101 -11.39547 -11.34546 -11.14197 -10.86276 -10.74014 -10.47605 -10.29291 -9.47930 -8.12318 -6.27903 1.39155 1.40530 1.50801 1.67623 2.13534 2.42554 2.68160 3.13868 3.34736 3.69389 3.73541 3.83424 3.92795 4.04443 4.22130 4.31816 4.32947 4.40538 4.48749 4.51672 4.53261 4.58857 4.65843 4.77995 4.82218 4.82832 4.83954 4.86209 4.94742 5.06194 5.11069 5.15481 5.21959 5.27506 5.45245 5.49625 5.56711 5.59021 5.91208 6.12248 6.21078 6.32581 6.60270 6.81301 7.26990 7.40268 8.91495 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004881 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.576782 B = 5735.191977 C = 6005.007596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.081 3.919 4 C -0.112 4.112 5 C 0.519 3.481 6 O -0.598 6.598 7 N -0.605 5.605 8 C 0.105 3.895 9 C -0.128 4.128 10 C -0.104 4.104 11 C 0.043 3.957 12 H -0.021 1.021 13 C -0.539 4.539 14 H 0.051 0.949 15 C 0.018 3.982 16 N -0.913 5.913 17 Si 0.956 3.044 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.130 3.870 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.262 0.738 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 10.515 -17.605 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C 0.005 3.995 4 C -0.115 4.115 5 C 0.309 3.691 6 O -0.479 6.479 7 N -0.336 5.336 8 C -0.016 4.016 9 C -0.166 4.166 10 C -0.142 4.142 11 C 0.023 3.977 12 H -0.003 1.003 13 C -0.578 4.578 14 H 0.069 0.931 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.198 1.198 21 C 0.007 3.993 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.150 4.150 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.127 0.873 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.813 9.796 -17.499 20.136 hybrid contribution 0.052 -0.960 1.636 1.898 sum -1.761 8.836 -15.863 18.243 Atomic orbital electron populations 1.22899 0.79352 1.03494 1.01118 1.87941 1.21557 1.28742 1.95607 1.22552 0.89155 0.85079 1.02683 1.22307 0.95977 1.01213 0.92009 1.21145 0.77784 0.84698 0.85459 1.90600 1.49088 1.21551 1.86708 1.48322 1.56892 1.20278 1.08081 1.22177 0.95845 0.83042 1.00573 1.21932 0.97511 1.01672 0.95496 1.21402 0.99733 0.95976 0.97084 1.18773 0.92619 0.94241 0.92029 1.00296 1.21428 0.96256 1.45228 0.94858 0.93103 1.25694 0.95218 0.95103 1.02127 1.70011 1.06714 1.48895 1.29590 0.85582 0.78118 0.78677 0.79442 1.19373 1.20846 1.19848 1.21434 0.96551 0.97290 0.84026 1.22782 1.00544 0.98492 0.93548 1.22881 1.04275 0.93031 0.95424 1.23047 1.00676 0.94437 0.96823 0.91165 0.89615 0.94150 0.92049 0.88270 0.89629 0.86989 0.88776 0.94271 0.94128 0.91867 0.92898 0.93699 0.91903 0.91574 0.91141 0.87443 0.89368 0.87279 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.42 -12.75 10.38 -148.98 -1.55 -14.30 16 3 C 0.08 1.92 4.74 71.98 0.34 2.26 16 4 C -0.11 -2.98 0.42 -52.40 -0.02 -3.00 16 5 C 0.52 20.32 6.53 87.66 0.57 20.89 16 6 O -0.60 -29.48 15.67 -3.03 -0.05 -29.53 16 7 N -0.60 -23.31 2.98 -819.76 -2.44 -25.75 16 8 C 0.10 3.03 5.16 86.36 0.45 3.47 16 9 C -0.13 -4.40 6.07 30.67 0.19 -4.21 16 10 C -0.10 -4.76 4.96 30.62 0.15 -4.60 16 11 C 0.04 2.25 2.24 -11.61 -0.03 2.22 16 12 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 13 C -0.54 -30.88 8.57 25.60 0.22 -30.66 16 14 H 0.05 2.88 7.75 -2.91 -0.02 2.86 16 15 C 0.02 1.00 5.30 84.66 0.45 1.45 16 16 N -0.91 -53.19 11.31 21.45 0.24 -52.95 16 17 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 21 C 0.13 6.08 5.64 86.22 0.49 6.56 16 22 C -0.12 -2.86 6.83 31.18 0.21 -2.65 16 23 C -0.12 -1.74 7.74 31.18 0.24 -1.50 16 24 C -0.11 -1.95 5.85 31.12 0.18 -1.77 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 1.44 5.79 -2.39 -0.01 1.42 16 29 H 0.10 1.51 7.32 -2.38 -0.02 1.49 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.11 2.41 3.18 -2.39 -0.01 2.40 16 32 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 3.31 6.04 -2.39 -0.01 3.30 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.04 2.36 7.00 -2.39 -0.02 2.34 16 38 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.07 1.93 7.80 -2.38 -0.02 1.91 16 40 H 0.07 1.79 7.99 -2.39 -0.02 1.77 16 41 H 0.11 1.08 7.61 -2.38 -0.02 1.06 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.11 1.23 7.34 -2.39 -0.02 1.21 16 44 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 Total: -1.00 -75.78 337.88 3.89 -71.89 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.97 Total: 13.85 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.69 Total: -9.70 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.20 Total: -78.70 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -1.59 Total: -43.83 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -75.78 3.89 -71.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.999 kcal (2) G-P(sol) polarization free energy of solvation -75.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds