Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00083 * 2 1 4 4 C 1.53003 * 109.47268 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47492 * 183.71033 * 4 3 2 6 6 C 1.50708 * 115.54922 * 303.77819 * 5 4 3 7 7 O 1.21270 * 120.00067 * 112.14275 * 6 5 4 8 8 N 1.34780 * 119.99404 * 292.14523 * 6 5 4 9 9 C 1.46918 * 120.63185 * 354.46362 * 8 6 5 10 10 C 1.53201 * 108.89209 * 126.34506 * 9 8 6 11 11 C 1.53355 * 109.14508 * 54.57797 * 10 9 8 12 12 C 1.53039 * 109.60718 * 298.70954 * 11 10 9 13 13 H 1.09003 * 109.50109 * 301.42601 * 12 11 10 14 14 C 1.50702 * 109.52512 * 181.34527 * 12 11 10 15 15 H 1.07998 * 119.99756 * 240.15051 * 14 12 11 16 16 C 1.37880 * 119.99931 * 60.14724 * 14 12 11 17 17 N 1.31523 * 119.99708 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00057 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47267 * 60.00079 * 18 16 14 20 20 H 1.48501 * 109.47403 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47164 * 299.99984 * 18 16 14 22 22 C 1.46928 * 120.62559 * 174.49245 * 8 6 5 23 23 C 1.53003 * 117.50032 * 89.44441 * 5 4 3 24 24 C 1.53002 * 117.50243 * 158.10635 * 5 4 3 25 25 H 1.08997 * 109.47666 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47166 * 300.00518 * 1 2 3 27 27 H 1.08999 * 109.46861 * 60.00243 * 1 2 3 28 28 H 1.08993 * 109.47692 * 59.99491 * 3 2 1 29 29 H 1.09002 * 109.47191 * 299.99540 * 3 2 1 30 30 H 1.08998 * 109.46822 * 63.70343 * 4 3 2 31 31 H 1.09008 * 109.46663 * 303.70809 * 4 3 2 32 32 H 1.09005 * 109.59090 * 246.19822 * 9 8 6 33 33 H 1.09000 * 109.59310 * 6.48667 * 9 8 6 34 34 H 1.08992 * 109.49532 * 174.65658 * 10 9 8 35 35 H 1.08997 * 109.49508 * 294.75300 * 10 9 8 36 36 H 1.09004 * 109.41444 * 178.67991 * 11 10 9 37 37 H 1.08993 * 109.43784 * 58.76052 * 11 10 9 38 38 H 0.96998 * 119.99486 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.58570 * 353.36858 * 22 8 6 40 40 H 1.08995 * 109.58778 * 113.79668 * 22 8 6 41 41 H 1.09000 * 117.49605 * 215.00284 * 23 5 4 42 42 H 1.08996 * 117.50075 * 0.02723 * 23 5 4 43 43 H 1.08994 * 117.49537 * 359.97438 * 24 5 4 44 44 H 1.08997 * 117.49813 * 144.97627 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1577 2.5792 0.0927 6 6 3.7367 3.5518 -0.9788 7 8 3.0573 4.5143 -0.6911 8 7 4.1152 3.3517 -2.2568 9 6 5.0363 2.2606 -2.6027 10 6 4.4007 1.4049 -3.7030 11 6 4.0179 2.3063 -4.8832 12 6 2.9935 3.3464 -4.4239 13 1 2.1132 2.8399 -4.0281 14 6 2.5940 4.2100 -5.5924 15 1 2.7656 5.2758 -5.5597 16 6 2.0095 3.6396 -6.7033 17 7 1.8001 2.3417 -6.7428 18 14 1.5149 4.7100 -8.1520 19 1 2.7152 5.3980 -8.6917 20 1 0.9130 3.8615 -9.2118 21 1 0.5238 5.7214 -7.7046 22 6 3.6149 4.2211 -3.3304 23 6 4.4266 3.1407 1.4903 24 6 5.5930 2.6791 0.6131 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8898 29 1 1.6887 1.8463 -0.8900 30 1 3.8613 0.7022 -0.9222 31 1 3.8530 0.5872 0.8541 32 1 5.9776 2.6769 -2.9615 33 1 5.2210 1.6453 -1.7221 34 1 5.1135 0.6497 -4.0339 35 1 3.5072 0.9168 -3.3138 36 1 3.5866 1.6984 -5.6785 37 1 4.9079 2.8133 -5.2559 38 1 1.3893 1.9404 -7.5244 39 1 2.8597 4.8978 -2.9306 40 1 4.4403 4.7973 -3.7485 41 1 4.2990 4.2136 1.6347 42 1 4.1606 2.5164 2.3433 43 1 6.0939 1.7513 0.8893 44 1 6.2329 3.4480 0.1801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -68.779993 kcal Electronic energy + Delta-G solvation = -23547.363771 eV Core-core repulsion = 20272.139948 eV Total energy + Delta-G solvation = -3275.223823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26094 -37.88277 -37.16508 -36.24225 -33.43848 -31.29388 -31.07956 -30.16559 -26.56406 -25.39086 -24.98385 -23.45589 -22.49615 -21.88688 -21.59610 -19.38968 -17.99765 -16.70749 -16.41482 -16.17328 -15.98938 -15.41774 -15.02130 -14.78364 -14.54459 -14.10864 -13.67909 -13.50527 -13.18305 -12.76481 -12.73012 -12.42345 -12.00892 -11.98764 -11.87595 -11.60609 -11.45920 -11.15273 -10.96754 -10.85939 -10.76846 -10.50691 -10.29872 -10.07695 -9.94303 -9.77529 -9.58161 -9.47458 -9.22505 -8.83684 -8.39227 -7.89906 -6.02794 -4.10178 2.93354 3.30551 3.35013 3.36389 3.40834 3.59988 3.89737 4.41513 4.63231 4.74255 4.82182 4.92476 5.19187 5.26462 5.33954 5.39891 5.43658 5.51260 5.53048 5.55942 5.66627 5.69753 5.75077 5.83236 5.85877 5.97041 6.04207 6.07604 6.18750 6.33850 6.40212 6.48406 6.65605 6.81597 6.96898 7.17107 7.19715 7.33216 7.67915 7.90414 8.01186 8.06641 8.36205 8.63417 8.93242 9.54708 11.02614 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.005294 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.994847 B = 5287.845874 C = 5955.380784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.063 3.937 4 C -0.075 4.075 5 C -0.153 4.153 6 C 0.544 3.456 7 O -0.549 6.549 8 N -0.595 5.595 9 C 0.107 3.893 10 C -0.136 4.136 11 C -0.112 4.112 12 C 0.042 3.958 13 H 0.028 0.972 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.117 3.883 23 C -0.146 4.146 24 C -0.158 4.158 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.035 0.965 38 H 0.261 0.739 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.559 -4.872 13.460 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.112 4.112 5 C -0.156 4.156 6 C 0.331 3.669 7 O -0.428 6.428 8 N -0.326 5.326 9 C -0.016 4.016 10 C -0.174 4.174 11 C -0.150 4.150 12 C 0.023 3.977 13 H 0.046 0.954 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.004 4.004 23 C -0.184 4.184 24 C -0.195 4.195 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.233 -4.660 13.461 15.175 hybrid contribution -0.498 0.686 -0.972 1.289 sum 4.735 -3.974 12.489 13.935 Atomic orbital electron populations 1.22724 0.80942 1.02495 1.00239 1.87794 1.19842 1.28088 1.95523 1.22460 0.93478 0.84442 1.00958 1.21033 0.93498 0.92708 1.03983 1.21338 1.01027 0.96843 0.96396 1.19393 0.79880 0.84979 0.82672 1.90652 1.39689 1.30796 1.81633 1.48221 1.45906 1.31901 1.06611 1.21822 0.92148 0.88748 0.98870 1.22077 0.99940 0.98119 0.97304 1.21677 0.98317 0.98090 0.96876 1.18956 0.93877 0.93056 0.91850 0.95371 1.21033 1.39939 0.93822 1.00601 0.92557 1.24932 0.95429 0.94976 0.98407 1.69871 1.43364 1.09737 1.29726 0.86644 0.78884 0.80357 0.82035 1.20248 1.21296 1.20247 1.22026 0.98276 0.93128 0.86988 1.23024 1.00953 1.02274 0.92113 1.23088 0.89779 1.03649 1.02962 0.89742 0.94304 0.93664 0.93146 0.92773 0.89722 0.90288 0.92090 0.90510 0.92438 0.92291 0.88675 0.94610 0.92909 0.90461 0.92674 0.87924 0.88055 0.87817 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.39 -5.86 10.70 -35.23 -0.38 -6.23 16 3 C 0.06 0.94 5.64 37.16 0.21 1.15 16 4 C -0.07 -0.97 5.20 -26.73 -0.14 -1.11 16 5 C -0.15 -2.08 0.84 -155.66 -0.13 -2.21 16 6 C 0.54 9.90 6.01 -10.98 -0.07 9.83 16 7 O -0.55 -11.91 16.20 5.57 0.09 -11.82 16 8 N -0.60 -11.06 2.97 -172.76 -0.51 -11.58 16 9 C 0.11 1.68 5.78 -3.71 -0.02 1.66 16 10 C -0.14 -2.43 6.11 -26.44 -0.16 -2.59 16 11 C -0.11 -2.50 4.97 -26.53 -0.13 -2.63 16 12 C 0.04 1.02 2.25 -91.65 -0.21 0.82 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 14 C -0.52 -13.92 8.56 -34.44 -0.29 -14.22 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.74 5.30 -17.81 -0.09 1.65 16 17 N -0.89 -24.87 11.32 55.43 0.63 -24.25 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.12 2.54 5.64 -3.71 -0.02 2.52 16 23 C -0.15 -1.68 9.76 -26.69 -0.26 -1.94 16 24 C -0.16 -1.67 9.22 -26.69 -0.25 -1.91 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.96 7.60 -51.93 -0.39 0.56 16 30 H 0.08 1.15 6.32 -51.93 -0.33 0.82 16 31 H 0.08 0.87 8.10 -51.92 -0.42 0.45 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.01 4.35 -51.93 -0.23 0.78 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 2.42 6.05 -51.93 -0.31 2.10 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.08 1.81 7.04 -51.93 -0.37 1.44 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.10 1.30 8.04 -51.93 -0.42 0.88 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -30.27 347.76 -7.91 -38.18 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.50 Total: 1.89 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.45 Total: -7.49 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.11 Total: -35.82 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.29 Total: -18.05 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.27 -7.91 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.605 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds