Wall clock time and date at job start Tue Mar 31 2020 05:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99691 * 2 1 4 4 C 1.52995 * 109.47110 * 124.99847 * 3 2 1 5 5 O 1.42898 * 109.47438 * 179.97438 * 4 3 2 6 6 C 1.42901 * 114.00417 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47009 * 30.00125 * 6 5 4 8 8 C 1.52998 * 109.47146 * 269.99776 * 6 5 4 9 9 C 1.50707 * 109.47015 * 150.00039 * 6 5 4 10 10 O 1.21277 * 119.99928 * 5.00172 * 9 6 5 11 11 N 1.34770 * 119.99443 * 185.00137 * 9 6 5 12 12 C 1.46921 * 120.63508 * 359.97438 * 11 9 6 13 13 C 1.53199 * 108.77612 * 126.41478 * 12 11 9 14 14 C 1.53038 * 109.31317 * 54.63616 * 13 12 11 15 15 C 1.53041 * 109.53602 * 298.63774 * 14 13 12 16 16 H 1.08996 * 109.49857 * 301.37680 * 15 14 13 17 17 C 1.50702 * 109.49749 * 181.31695 * 15 14 13 18 18 H 1.08002 * 120.00299 * 240.00218 * 17 15 14 19 19 C 1.37884 * 119.99942 * 59.71777 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.46933 * 120.62676 * 180.02562 * 11 9 6 26 26 H 1.07998 * 119.99964 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.00492 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99871 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47338 * 4.99282 * 3 2 1 30 30 H 1.09007 * 109.46842 * 244.99459 * 3 2 1 31 31 H 1.09002 * 109.47484 * 59.99195 * 4 3 2 32 32 H 1.09001 * 109.47371 * 299.99518 * 4 3 2 33 33 H 1.08998 * 109.47452 * 300.00079 * 8 6 5 34 34 H 1.09011 * 109.46643 * 60.00066 * 8 6 5 35 35 H 1.09002 * 109.47203 * 179.97438 * 8 6 5 36 36 H 1.08996 * 109.58993 * 6.62573 * 12 11 9 37 37 H 1.08998 * 109.70610 * 246.26909 * 12 11 9 38 38 H 1.09003 * 109.49552 * 294.68257 * 13 12 11 39 39 H 1.08996 * 109.52351 * 174.60146 * 13 12 11 40 40 H 1.08996 * 109.46134 * 178.61302 * 14 13 12 41 41 H 1.09005 * 109.45828 * 58.65650 * 14 13 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.58639 * 113.80028 * 25 11 9 44 44 H 1.08996 * 109.58488 * 353.37216 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 8 3.7498 2.5705 1.1813 6 6 4.6885 2.6997 2.2510 7 1 5.0647 1.7142 2.5254 8 6 4.0000 3.3375 3.4594 9 6 5.8365 3.5706 1.8095 10 8 5.8066 4.1085 0.7229 11 7 6.8962 3.7517 2.6222 12 6 6.9466 3.1072 3.9415 13 6 8.2553 2.3191 4.0557 14 6 9.4342 3.2510 3.7660 15 6 9.3196 3.7930 2.3394 16 1 9.3068 2.9618 1.6344 17 6 10.4978 4.6849 2.0439 18 1 10.3391 5.7211 1.7841 19 6 11.7790 4.1795 2.1111 20 7 11.9723 2.9177 2.4275 21 14 13.2398 5.2870 1.7523 22 1 13.6942 5.9304 3.0113 23 1 14.3467 4.4773 1.1828 24 1 12.8400 6.3338 0.7779 25 6 8.0227 4.5982 2.2060 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0894 30 1 2.6213 1.4026 -0.9314 31 1 3.7398 0.5066 1.0922 32 1 2.4771 1.2357 2.1130 33 1 3.6238 4.3230 3.1851 34 1 3.1696 2.7075 3.7787 35 1 4.7159 3.4357 4.2755 36 1 6.1007 2.4283 4.0492 37 1 6.9077 3.8661 4.7230 38 1 8.2519 1.5017 3.3346 39 1 8.3503 1.9149 5.0635 40 1 10.3680 2.6986 3.8707 41 1 9.4227 4.0815 4.4720 42 1 12.8736 2.5621 2.4743 43 1 8.0725 5.4801 2.8446 44 1 7.8868 4.9031 1.1684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:11 Heat of formation + Delta-G solvation = -72.055439 kcal Electronic energy + Delta-G solvation = -22546.241141 eV Core-core repulsion = 19270.875284 eV Total energy + Delta-G solvation = -3275.365857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.98927 -38.05579 -36.60613 -35.25023 -33.68436 -31.92702 -31.17063 -29.96949 -29.04111 -25.44867 -25.10057 -23.57828 -22.74075 -21.73601 -20.23956 -19.76527 -18.45526 -17.18557 -16.67836 -16.24342 -15.86757 -15.35886 -15.09429 -14.73773 -14.39980 -13.89173 -13.67190 -13.56315 -13.17235 -13.00107 -12.71686 -12.63715 -12.41873 -12.16788 -12.05675 -11.88589 -11.37094 -11.28749 -11.17042 -10.98689 -10.83259 -10.74186 -10.33344 -9.96202 -9.89662 -9.77421 -9.61643 -9.45645 -9.10434 -8.81879 -8.39717 -7.91317 -6.03022 -4.09987 1.95451 3.02267 3.09654 3.29198 3.36253 3.40662 3.92314 4.42066 4.66292 4.70152 4.83452 4.86262 4.99393 5.04506 5.16372 5.24218 5.25634 5.30209 5.45859 5.56643 5.58890 5.59634 5.72070 5.76772 5.85068 6.02054 6.09087 6.30362 6.33656 6.37095 6.45518 6.46741 6.64453 6.77357 6.91933 7.08443 7.16773 7.32054 7.67916 7.89602 7.98962 8.06277 8.36480 8.65284 8.93667 9.54919 11.02498 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030522 B = 0.003318 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.149127 B = 8437.429822 C = 8640.979502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C -0.094 4.094 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.072 3.928 7 H 0.083 0.917 8 C -0.177 4.177 9 C 0.510 3.490 10 O -0.530 6.530 11 N -0.601 5.601 12 C 0.103 3.897 13 C -0.136 4.136 14 C -0.113 4.113 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.513 4.513 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.118 3.882 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.056 0.944 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.967 -5.941 3.836 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.169 4.169 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.275 6.275 6 C 0.011 3.989 7 H 0.101 0.899 8 C -0.234 4.234 9 C 0.296 3.704 10 O -0.407 6.407 11 N -0.335 5.335 12 C -0.020 4.020 13 C -0.174 4.174 14 C -0.151 4.151 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.552 4.552 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.002 4.002 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.869 -5.624 3.125 18.992 hybrid contribution 0.918 0.172 0.169 0.949 sum -16.950 -5.453 3.294 18.108 Atomic orbital electron populations 1.23882 0.95867 1.01958 1.01127 1.22839 0.96008 0.98121 0.99890 1.20643 0.97894 0.95704 0.98835 1.22511 0.94105 0.86510 0.98188 1.88024 1.53791 1.36905 1.48817 1.21887 0.89529 0.99256 0.88215 0.89921 1.22404 1.01533 1.02402 0.97067 1.20199 0.82995 0.82264 0.84915 1.90678 1.79396 1.49188 1.21390 1.48231 1.19162 1.49031 1.17067 1.21928 0.99018 0.96437 0.84570 1.22027 0.95673 0.99208 1.00519 1.21636 0.97669 0.97417 0.98362 1.18988 0.90034 0.95268 0.93657 0.95242 1.21081 0.90566 0.96699 1.46852 0.92439 1.24939 0.98886 0.95030 0.94991 1.69871 1.21460 1.13019 1.48486 0.86570 0.82188 0.80600 0.78522 1.20693 1.21245 1.19836 1.22022 0.85238 0.92591 1.00366 0.88454 0.88382 0.87153 0.90583 0.89786 0.93092 0.93217 0.91158 0.91594 0.90149 0.90946 0.91649 0.92381 0.92379 0.88555 0.94526 0.92979 0.92577 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 14.32 29.01 0.42 -1.00 16 2 C -0.15 -1.25 9.52 -36.03 -0.34 -1.59 16 3 C -0.09 -0.94 6.03 -27.89 -0.17 -1.11 16 4 C 0.06 0.70 5.73 37.15 0.21 0.92 16 5 O -0.36 -5.43 9.53 -55.09 -0.52 -5.96 16 6 C 0.07 1.04 2.30 -27.88 -0.06 0.97 16 7 H 0.08 1.02 7.08 -51.93 -0.37 0.66 16 8 C -0.18 -1.97 9.10 37.16 0.34 -1.63 16 9 C 0.51 9.69 7.12 -10.99 -0.08 9.61 16 10 O -0.53 -12.35 15.92 -14.30 -0.23 -12.58 16 11 N -0.60 -11.16 2.97 -172.74 -0.51 -11.67 16 12 C 0.10 1.54 4.97 -3.71 -0.02 1.53 16 13 C -0.14 -2.34 6.08 -26.61 -0.16 -2.50 16 14 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 15 C 0.04 0.97 2.26 -91.63 -0.21 0.76 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.51 -13.88 8.57 -34.44 -0.30 -14.18 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.87 11.30 55.43 0.63 -24.24 16 21 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.12 2.58 5.66 -3.68 -0.02 2.56 16 26 H 0.10 0.68 7.84 -52.49 -0.41 0.27 16 27 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 28 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 30 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.05 0.46 7.87 -51.93 -0.41 0.06 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.59 7.87 -51.92 -0.41 0.18 16 35 H 0.08 0.81 5.41 -51.93 -0.28 0.53 16 36 H 0.07 0.85 4.66 -51.93 -0.24 0.61 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.10 2.42 6.03 -51.93 -0.31 2.10 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.88 7.00 -51.93 -0.36 1.52 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -31.24 349.43 -8.40 -39.64 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.39 Total: 0.14 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.62 Total: -6.66 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.11 Total: -35.92 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.75 Total: -18.54 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.24 -8.40 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.417 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds