Wall clock time and date at job start Tue Mar 31 2020 05:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99691 * 2 1 4 4 C 1.52995 * 109.47110 * 124.99847 * 3 2 1 5 5 O 1.42898 * 109.47438 * 179.97438 * 4 3 2 6 6 C 1.42901 * 114.00417 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47009 * 30.00125 * 6 5 4 8 8 C 1.52998 * 109.47146 * 269.99776 * 6 5 4 9 9 C 1.50707 * 109.47015 * 150.00039 * 6 5 4 10 10 O 1.21277 * 119.99928 * 5.00172 * 9 6 5 11 11 N 1.34770 * 119.99443 * 185.00137 * 9 6 5 12 12 C 1.46921 * 120.63508 * 359.97438 * 11 9 6 13 13 C 1.53199 * 108.77612 * 126.41478 * 12 11 9 14 14 C 1.53038 * 109.31317 * 54.63616 * 13 12 11 15 15 C 1.53041 * 109.53602 * 298.63774 * 14 13 12 16 16 H 1.08996 * 109.49857 * 301.37680 * 15 14 13 17 17 C 1.50702 * 109.49749 * 181.31695 * 15 14 13 18 18 H 1.08002 * 120.00299 * 240.00218 * 17 15 14 19 19 C 1.37884 * 119.99942 * 59.71777 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.46933 * 120.62676 * 180.02562 * 11 9 6 26 26 H 1.07998 * 119.99964 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.00492 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99871 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47338 * 4.99282 * 3 2 1 30 30 H 1.09007 * 109.46842 * 244.99459 * 3 2 1 31 31 H 1.09002 * 109.47484 * 59.99195 * 4 3 2 32 32 H 1.09001 * 109.47371 * 299.99518 * 4 3 2 33 33 H 1.08998 * 109.47452 * 300.00079 * 8 6 5 34 34 H 1.09011 * 109.46643 * 60.00066 * 8 6 5 35 35 H 1.09002 * 109.47203 * 179.97438 * 8 6 5 36 36 H 1.08996 * 109.58993 * 6.62573 * 12 11 9 37 37 H 1.08998 * 109.70610 * 246.26909 * 12 11 9 38 38 H 1.09003 * 109.49552 * 294.68257 * 13 12 11 39 39 H 1.08996 * 109.52351 * 174.60146 * 13 12 11 40 40 H 1.08996 * 109.46134 * 178.61302 * 14 13 12 41 41 H 1.09005 * 109.45828 * 58.65650 * 14 13 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.58639 * 113.80028 * 25 11 9 44 44 H 1.08996 * 109.58488 * 353.37216 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 8 3.7498 2.5705 1.1813 6 6 4.6885 2.6997 2.2510 7 1 5.0647 1.7142 2.5254 8 6 4.0000 3.3375 3.4594 9 6 5.8365 3.5706 1.8095 10 8 5.8066 4.1085 0.7229 11 7 6.8962 3.7517 2.6222 12 6 6.9466 3.1072 3.9415 13 6 8.2553 2.3191 4.0557 14 6 9.4342 3.2510 3.7660 15 6 9.3196 3.7930 2.3394 16 1 9.3068 2.9618 1.6344 17 6 10.4978 4.6849 2.0439 18 1 10.3391 5.7211 1.7841 19 6 11.7790 4.1795 2.1111 20 7 11.9723 2.9177 2.4275 21 14 13.2398 5.2870 1.7523 22 1 13.6942 5.9304 3.0113 23 1 14.3467 4.4773 1.1828 24 1 12.8400 6.3338 0.7779 25 6 8.0227 4.5982 2.2060 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0894 30 1 2.6213 1.4026 -0.9314 31 1 3.7398 0.5066 1.0922 32 1 2.4771 1.2357 2.1130 33 1 3.6238 4.3230 3.1851 34 1 3.1696 2.7075 3.7787 35 1 4.7159 3.4357 4.2755 36 1 6.1007 2.4283 4.0492 37 1 6.9077 3.8661 4.7230 38 1 8.2519 1.5017 3.3346 39 1 8.3503 1.9149 5.0635 40 1 10.3680 2.6986 3.8707 41 1 9.4227 4.0815 4.4720 42 1 12.8736 2.5621 2.4743 43 1 8.0725 5.4801 2.8446 44 1 7.8868 4.9031 1.1684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:10 Heat of formation + Delta-G solvation = -90.139064 kcal Electronic energy + Delta-G solvation = -22547.025305 eV Core-core repulsion = 19270.875284 eV Total energy + Delta-G solvation = -3276.150022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40056 -39.23188 -38.16426 -36.03087 -35.46532 -33.44122 -32.59259 -31.49996 -29.88547 -27.10555 -26.74504 -24.69900 -23.74905 -23.36400 -21.56070 -20.69356 -19.95301 -18.58552 -18.24138 -17.70458 -16.92745 -16.70052 -16.49859 -16.07351 -15.68861 -15.29838 -15.12166 -14.70028 -14.60917 -14.20350 -14.16680 -13.80531 -13.69954 -13.43730 -13.23835 -13.15541 -12.86369 -12.64113 -12.56976 -12.20129 -12.11245 -11.97115 -11.92886 -11.82937 -11.57848 -11.26256 -10.94434 -10.79605 -10.46679 -10.37339 -10.25666 -9.52357 -8.11584 -6.26623 1.34409 1.40073 1.41509 1.51382 1.57959 1.83897 2.42229 2.83186 3.14836 3.46567 3.83138 3.94755 4.06120 4.09602 4.15628 4.23465 4.26290 4.33498 4.46207 4.46624 4.52583 4.57280 4.69602 4.78292 4.81007 4.86537 4.89705 4.96205 5.04317 5.11618 5.12059 5.21962 5.27214 5.46386 5.55108 5.60972 5.73874 5.86176 5.92937 6.10053 6.16104 6.34059 6.53276 6.82620 7.18521 7.41402 8.92027 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030522 B = 0.003318 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.149127 B = 8437.429822 C = 8640.979502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C -0.093 4.093 4 C 0.059 3.941 5 O -0.390 6.390 6 C 0.078 3.922 7 H 0.109 0.891 8 C -0.169 4.169 9 C 0.499 3.501 10 O -0.587 6.587 11 N -0.602 5.602 12 C 0.102 3.898 13 C -0.129 4.129 14 C -0.107 4.107 15 C 0.041 3.959 16 H -0.015 1.015 17 C -0.538 4.538 18 H 0.051 0.949 19 C 0.017 3.983 20 N -0.913 5.913 21 Si 0.955 3.045 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.130 3.870 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.262 0.738 43 H 0.065 0.935 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.683 -6.851 6.085 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.180 4.180 3 C -0.130 4.130 4 C -0.017 4.017 5 O -0.309 6.309 6 C 0.018 3.982 7 H 0.127 0.873 8 C -0.227 4.227 9 C 0.288 3.712 10 O -0.467 6.467 11 N -0.335 5.335 12 C -0.019 4.019 13 C -0.167 4.167 14 C -0.145 4.145 15 C 0.022 3.978 16 H 0.003 0.997 17 C -0.577 4.577 18 H 0.069 0.931 19 C -0.182 4.182 20 N -0.552 5.552 21 Si 0.781 3.219 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.008 3.992 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.601 -6.555 5.412 21.365 hybrid contribution 1.432 0.432 -0.591 1.608 sum -18.169 -6.123 4.821 19.770 Atomic orbital electron populations 1.24077 0.95615 1.02879 0.99355 1.22797 0.96312 0.97466 1.01451 1.20625 0.97706 0.96819 0.97845 1.22744 0.94237 0.85063 0.99637 1.87997 1.54198 1.39032 1.49705 1.21947 0.88059 0.99369 0.88871 0.87342 1.22403 1.02623 1.01993 0.95640 1.21266 0.83959 0.81983 0.83990 1.90643 1.80646 1.51556 1.23873 1.48294 1.18048 1.48570 1.18561 1.22251 0.99213 0.97474 0.82955 1.21945 0.94675 0.97915 1.02160 1.21433 0.98616 0.98044 0.96401 1.18890 0.90799 0.93775 0.94352 0.99710 1.21439 0.92043 0.96905 1.47309 0.93055 1.25682 1.01376 0.96357 0.94791 1.70004 1.21990 1.14297 1.48883 0.85603 0.78905 0.78813 0.78621 1.19504 1.20909 1.19850 1.21576 0.85555 0.93099 0.98965 0.88271 0.86741 0.86221 0.90887 0.91625 0.92528 0.90710 0.92595 0.88451 0.88489 0.86552 0.89189 0.93729 0.88730 0.91848 0.94170 0.92903 0.91671 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 14.32 67.78 0.97 -1.31 16 2 C -0.16 -2.40 9.52 25.65 0.24 -2.15 16 3 C -0.09 -1.79 6.03 29.85 0.18 -1.61 16 4 C 0.06 1.19 5.73 71.98 0.41 1.60 16 5 O -0.39 -11.45 9.53 -129.99 -1.24 -12.69 16 6 C 0.08 2.06 2.30 29.85 0.07 2.13 16 7 H 0.11 2.27 7.08 -2.39 -0.02 2.25 16 8 C -0.17 -3.12 9.10 71.98 0.66 -2.47 16 9 C 0.50 18.88 7.12 87.66 0.62 19.51 16 10 O -0.59 -28.49 15.92 15.97 0.25 -28.23 16 11 N -0.60 -21.97 2.97 -818.83 -2.43 -24.41 16 12 C 0.10 2.70 4.97 86.37 0.43 3.13 16 13 C -0.13 -4.16 6.08 30.67 0.19 -3.97 16 14 C -0.11 -4.72 4.96 30.62 0.15 -4.57 16 15 C 0.04 2.09 2.26 -11.45 -0.03 2.06 16 16 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 17 C -0.54 -30.15 8.57 25.60 0.22 -29.93 16 18 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 19 C 0.02 0.95 5.30 84.66 0.45 1.40 16 20 N -0.91 -52.30 11.30 21.45 0.24 -52.06 16 21 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 25 C 0.13 5.86 5.66 86.38 0.49 6.35 16 26 H 0.10 1.19 7.84 -2.91 -0.02 1.17 16 27 H 0.11 1.06 8.06 -2.91 -0.02 1.03 16 28 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 29 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 30 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 32 H 0.07 1.13 7.87 -2.39 -0.02 1.11 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.23 7.87 -2.38 -0.02 1.21 16 35 H 0.10 1.45 5.41 -2.39 -0.01 1.44 16 36 H 0.12 2.12 4.66 -2.39 -0.01 2.11 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.06 3.24 6.03 -2.39 -0.01 3.22 16 41 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 43 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.05 2.43 7.00 -2.39 -0.02 2.42 16 Total: -1.00 -72.87 349.43 4.86 -68.01 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.96 Total: 13.27 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.05 Total: -9.82 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -2.19 Total: -76.47 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.98 Total: -40.92 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.87 4.86 -68.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.131 kcal (2) G-P(sol) polarization free energy of solvation -72.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds