Wall clock time and date at job start Tue Mar 31 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 119.99765 * 2 1 4 4 C 1.52997 * 109.47427 * 124.99941 * 3 2 1 5 5 O 1.42906 * 109.47304 * 180.02562 * 4 3 2 6 6 C 1.42901 * 113.99999 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47357 * 29.99193 * 6 5 4 8 8 C 1.53000 * 109.46741 * 269.99662 * 6 5 4 9 9 C 1.50695 * 109.47259 * 149.99585 * 6 5 4 10 10 O 1.21281 * 119.99995 * 10.09294 * 9 6 5 11 11 N 1.34774 * 120.00024 * 190.08857 * 9 6 5 12 12 C 1.46929 * 120.62892 * 5.08559 * 11 9 6 13 13 C 1.52764 * 109.00610 * 233.57984 * 12 11 9 14 14 C 1.53038 * 109.38486 * 305.59103 * 13 12 11 15 15 C 1.53039 * 109.54091 * 61.23827 * 14 13 12 16 16 H 1.08994 * 109.49862 * 58.58907 * 15 14 13 17 17 C 1.50702 * 109.49728 * 178.68530 * 15 14 13 18 18 H 1.08008 * 119.99902 * 119.83517 * 17 15 14 19 19 C 1.37867 * 120.00237 * 299.83837 * 17 15 14 20 20 N 1.31513 * 120.00215 * 180.02562 * 19 17 15 21 21 Si 1.86807 * 120.00064 * 359.97438 * 19 17 15 22 22 H 1.48501 * 109.46937 * 90.00064 * 21 19 17 23 23 H 1.48491 * 109.47282 * 209.99991 * 21 19 17 24 24 H 1.48499 * 109.46950 * 330.00512 * 21 19 17 25 25 C 1.46922 * 120.63483 * 185.36000 * 11 9 6 26 26 H 1.08004 * 119.99950 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00308 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00308 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47234 * 244.99562 * 3 2 1 30 30 H 1.08998 * 109.47441 * 4.99086 * 3 2 1 31 31 H 1.09000 * 109.46848 * 299.99550 * 4 3 2 32 32 H 1.08998 * 109.47508 * 59.99186 * 4 3 2 33 33 H 1.09002 * 109.47716 * 55.00681 * 8 6 5 34 34 H 1.08999 * 109.47680 * 175.00962 * 8 6 5 35 35 H 1.09001 * 109.46904 * 295.01017 * 8 6 5 36 36 H 1.08995 * 109.58503 * 353.41000 * 12 11 9 37 37 H 1.08996 * 109.58966 * 113.84366 * 12 11 9 38 38 H 1.08997 * 109.56767 * 185.54823 * 13 12 11 39 39 H 1.09006 * 109.38766 * 65.51404 * 13 12 11 40 40 H 1.09006 * 109.45589 * 301.21894 * 14 13 12 41 41 H 1.09006 * 109.46277 * 181.26126 * 14 13 12 42 42 H 0.97005 * 119.99880 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.59025 * 246.16351 * 25 11 9 44 44 H 1.09011 * 109.58372 * 6.43975 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 8 3.7489 2.5711 1.1819 6 6 4.6884 2.6999 2.2510 7 1 5.0654 1.7143 2.5242 8 6 4.0004 3.3360 3.4605 9 6 5.8354 3.5718 1.8094 10 8 5.7646 4.1842 0.7649 11 7 6.9400 3.6713 2.5753 12 6 7.0879 2.8517 3.7857 13 6 7.3934 3.7657 4.9711 14 6 8.6127 4.6308 4.6444 15 6 8.3090 5.5039 3.4248 16 1 7.4405 6.1290 3.6321 17 6 9.4986 6.3786 3.1236 18 1 9.9969 6.3024 2.1683 19 6 9.9510 7.2761 4.0673 20 7 10.9889 8.0398 3.8043 21 14 9.0889 7.4084 5.7193 22 1 9.7128 6.4636 6.6802 23 1 9.2168 8.7950 6.2348 24 1 7.6519 7.0714 5.5561 25 6 8.0164 4.6055 2.2189 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 2.6213 1.4026 -0.9314 30 1 1.3585 2.1316 0.0894 31 1 2.4771 1.2358 2.1130 32 1 3.7398 0.5067 1.0922 33 1 3.1183 2.7529 3.7251 34 1 4.6908 3.3533 4.3038 35 1 3.7018 4.3550 3.2144 36 1 6.1621 2.3082 3.9743 37 1 7.9076 2.1460 3.6514 38 1 7.6020 3.1613 5.8538 39 1 6.5335 4.4072 5.1644 40 1 9.4662 3.9883 4.4276 41 1 8.8455 5.2676 5.4980 42 1 11.3069 8.6715 4.4682 43 1 8.9134 4.0458 1.9541 44 1 7.7041 5.2171 1.3723 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:13 Heat of formation + Delta-G solvation = -65.540952 kcal Electronic energy + Delta-G solvation = -22671.990278 eV Core-core repulsion = 19396.906911 eV Total energy + Delta-G solvation = -3275.083368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14163 -38.20988 -36.86298 -35.31717 -33.70092 -32.01270 -31.55807 -30.38728 -29.15812 -25.79108 -25.09470 -23.79181 -22.86666 -21.72536 -20.36234 -19.91909 -18.51216 -17.37473 -16.84911 -16.64714 -15.96418 -15.48957 -15.29585 -14.87389 -14.43985 -14.08628 -13.98489 -13.59634 -13.50675 -13.10424 -12.87206 -12.64498 -12.54197 -12.32972 -12.28432 -12.13345 -11.45645 -11.43232 -11.30847 -11.27892 -11.14476 -10.73151 -10.35057 -10.18170 -9.97647 -9.84274 -9.68317 -9.51137 -9.20787 -8.99692 -8.58525 -8.11743 -6.11097 -4.11316 1.89566 2.88010 2.98416 3.21732 3.34102 3.36358 3.80762 4.36639 4.55645 4.63122 4.73040 4.77510 4.91970 4.97380 5.05037 5.09863 5.16812 5.18945 5.28122 5.44306 5.47475 5.52111 5.57475 5.68292 5.76002 5.81995 5.93489 6.00960 6.04044 6.16567 6.27745 6.34342 6.40790 6.50641 6.63664 6.69702 6.81100 6.99099 7.13461 7.43445 7.70689 7.79893 8.44826 8.52250 8.92341 9.50223 11.01883 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037708 B = 0.003479 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.360408 B = 8045.649005 C = 8308.804508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.094 4.094 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.073 3.927 7 H 0.081 0.919 8 C -0.174 4.174 9 C 0.512 3.488 10 O -0.525 6.525 11 N -0.606 5.606 12 C 0.106 3.894 13 C -0.140 4.140 14 C -0.122 4.122 15 C 0.005 3.995 16 H 0.030 0.970 17 C -0.514 4.514 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.266 1.266 25 C 0.130 3.870 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.063 0.937 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.603 -17.384 0.697 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.170 4.170 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.275 6.275 6 C 0.012 3.988 7 H 0.099 0.901 8 C -0.231 4.231 9 C 0.298 3.702 10 O -0.400 6.400 11 N -0.341 5.341 12 C -0.017 4.017 13 C -0.179 4.179 14 C -0.160 4.160 15 C -0.014 4.014 16 H 0.049 0.951 17 C -0.553 4.553 18 H 0.094 0.906 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.191 1.191 25 C 0.009 3.991 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.549 -16.760 0.034 23.554 hybrid contribution -0.234 -0.125 1.356 1.381 sum -16.783 -16.885 1.390 23.848 Atomic orbital electron populations 1.23899 0.95886 1.02021 1.00869 1.22821 0.96013 0.98047 1.00129 1.20644 0.97937 0.95785 0.98729 1.22516 0.94112 0.86352 0.98321 1.88044 1.53826 1.36889 1.48765 1.21907 0.89523 0.99020 0.88374 0.90135 1.22313 1.01321 1.02733 0.96753 1.20216 0.82807 0.82852 0.84342 1.90696 1.80308 1.46008 1.23025 1.48266 1.19091 1.41461 1.25241 1.21720 1.01453 0.93402 0.85157 1.21956 1.00526 0.98734 0.96653 1.21989 0.95924 0.98101 0.99970 1.19475 0.97966 0.93304 0.90701 0.95149 1.20902 1.12225 1.19048 1.03088 0.90554 1.24983 0.94574 0.95054 0.98429 1.69893 1.24694 1.23698 1.35309 0.86827 0.80860 0.76030 0.84414 1.20591 1.22506 1.19088 1.21784 0.87154 0.90529 0.99637 0.88361 0.88395 0.87201 0.89829 0.90493 0.93161 0.93187 0.91447 0.90387 0.90973 0.90625 0.91270 0.91608 0.92018 0.91849 0.93135 0.92582 0.91839 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 14.32 29.02 0.42 -0.88 16 2 C -0.15 -1.14 9.52 -36.03 -0.34 -1.48 16 3 C -0.09 -0.87 6.03 -27.89 -0.17 -1.03 16 4 C 0.06 0.64 5.73 37.16 0.21 0.85 16 5 O -0.36 -5.11 9.54 -54.94 -0.52 -5.63 16 6 C 0.07 0.97 2.28 -27.89 -0.06 0.91 16 7 H 0.08 0.84 6.80 -51.93 -0.35 0.49 16 8 C -0.17 -1.98 9.19 37.16 0.34 -1.64 16 9 C 0.51 9.13 7.03 -10.99 -0.08 9.05 16 10 O -0.52 -11.68 15.97 -14.15 -0.23 -11.91 16 11 N -0.61 -10.46 2.98 -173.03 -0.52 -10.97 16 12 C 0.11 1.41 5.57 -3.93 -0.02 1.39 16 13 C -0.14 -2.11 5.95 -26.83 -0.16 -2.27 16 14 C -0.12 -2.43 4.66 -26.69 -0.12 -2.55 16 15 C 0.01 0.12 1.84 -91.65 -0.17 -0.05 16 16 H 0.03 0.74 7.19 -51.93 -0.37 0.37 16 17 C -0.51 -14.17 9.14 -34.44 -0.31 -14.48 16 18 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 19 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 20 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 21 Si 0.89 21.55 24.39 -169.99 -4.15 17.41 16 22 H -0.28 -6.49 6.86 56.52 0.39 -6.10 16 23 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.27 -6.20 6.53 56.52 0.37 -5.83 16 25 C 0.13 2.68 5.64 -3.71 -0.02 2.66 16 26 H 0.10 0.54 8.06 -52.48 -0.42 0.12 16 27 H 0.10 0.64 7.84 -52.49 -0.41 0.23 16 28 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.73 7.79 -51.93 -0.40 0.32 16 31 H 0.05 0.43 7.78 -51.93 -0.40 0.03 16 32 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.07 0.61 7.78 -51.93 -0.40 0.21 16 34 H 0.08 0.82 5.68 -51.93 -0.30 0.52 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.77 4.52 -51.93 -0.23 0.53 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.95 7.78 -51.93 -0.40 0.54 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.09 1.95 7.04 -51.92 -0.37 1.59 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -32.92 342.52 -7.29 -40.21 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.22 Total: -0.23 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.59 Total: -7.59 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.26 Total: -37.41 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.75 Total: -17.54 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.15 Total: 17.41 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.92 -7.29 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.335 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds