Wall clock time and date at job start Tue Mar 31 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 119.99765 * 2 1 4 4 C 1.52997 * 109.47427 * 124.99941 * 3 2 1 5 5 O 1.42906 * 109.47304 * 180.02562 * 4 3 2 6 6 C 1.42901 * 113.99999 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47357 * 29.99193 * 6 5 4 8 8 C 1.53000 * 109.46741 * 269.99662 * 6 5 4 9 9 C 1.50695 * 109.47259 * 149.99585 * 6 5 4 10 10 O 1.21281 * 119.99995 * 10.09294 * 9 6 5 11 11 N 1.34774 * 120.00024 * 190.08857 * 9 6 5 12 12 C 1.46929 * 120.62892 * 5.08559 * 11 9 6 13 13 C 1.52764 * 109.00610 * 233.57984 * 12 11 9 14 14 C 1.53038 * 109.38486 * 305.59103 * 13 12 11 15 15 C 1.53039 * 109.54091 * 61.23827 * 14 13 12 16 16 H 1.08994 * 109.49862 * 58.58907 * 15 14 13 17 17 C 1.50702 * 109.49728 * 178.68530 * 15 14 13 18 18 H 1.08008 * 119.99902 * 119.83517 * 17 15 14 19 19 C 1.37867 * 120.00237 * 299.83837 * 17 15 14 20 20 N 1.31513 * 120.00215 * 180.02562 * 19 17 15 21 21 Si 1.86807 * 120.00064 * 359.97438 * 19 17 15 22 22 H 1.48501 * 109.46937 * 90.00064 * 21 19 17 23 23 H 1.48491 * 109.47282 * 209.99991 * 21 19 17 24 24 H 1.48499 * 109.46950 * 330.00512 * 21 19 17 25 25 C 1.46922 * 120.63483 * 185.36000 * 11 9 6 26 26 H 1.08004 * 119.99950 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00308 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00308 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47234 * 244.99562 * 3 2 1 30 30 H 1.08998 * 109.47441 * 4.99086 * 3 2 1 31 31 H 1.09000 * 109.46848 * 299.99550 * 4 3 2 32 32 H 1.08998 * 109.47508 * 59.99186 * 4 3 2 33 33 H 1.09002 * 109.47716 * 55.00681 * 8 6 5 34 34 H 1.08999 * 109.47680 * 175.00962 * 8 6 5 35 35 H 1.09001 * 109.46904 * 295.01017 * 8 6 5 36 36 H 1.08995 * 109.58503 * 353.41000 * 12 11 9 37 37 H 1.08996 * 109.58966 * 113.84366 * 12 11 9 38 38 H 1.08997 * 109.56767 * 185.54823 * 13 12 11 39 39 H 1.09006 * 109.38766 * 65.51404 * 13 12 11 40 40 H 1.09006 * 109.45589 * 301.21894 * 14 13 12 41 41 H 1.09006 * 109.46277 * 181.26126 * 14 13 12 42 42 H 0.97005 * 119.99880 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.59025 * 246.16351 * 25 11 9 44 44 H 1.09011 * 109.58372 * 6.43975 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 8 3.7489 2.5711 1.1819 6 6 4.6884 2.6999 2.2510 7 1 5.0654 1.7143 2.5242 8 6 4.0004 3.3360 3.4605 9 6 5.8354 3.5718 1.8094 10 8 5.7646 4.1842 0.7649 11 7 6.9400 3.6713 2.5753 12 6 7.0879 2.8517 3.7857 13 6 7.3934 3.7657 4.9711 14 6 8.6127 4.6308 4.6444 15 6 8.3090 5.5039 3.4248 16 1 7.4405 6.1290 3.6321 17 6 9.4986 6.3786 3.1236 18 1 9.9969 6.3024 2.1683 19 6 9.9510 7.2761 4.0673 20 7 10.9889 8.0398 3.8043 21 14 9.0889 7.4084 5.7193 22 1 9.7128 6.4636 6.6802 23 1 9.2168 8.7950 6.2348 24 1 7.6519 7.0714 5.5561 25 6 8.0164 4.6055 2.2189 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 2.6213 1.4026 -0.9314 30 1 1.3585 2.1316 0.0894 31 1 2.4771 1.2358 2.1130 32 1 3.7398 0.5067 1.0922 33 1 3.1183 2.7529 3.7251 34 1 4.6908 3.3533 4.3038 35 1 3.7018 4.3550 3.2144 36 1 6.1621 2.3082 3.9743 37 1 7.9076 2.1460 3.6514 38 1 7.6020 3.1613 5.8538 39 1 6.5335 4.4072 5.1644 40 1 9.4662 3.9883 4.4276 41 1 8.8455 5.2676 5.4980 42 1 11.3069 8.6715 4.4682 43 1 8.9134 4.0458 1.9541 44 1 7.7041 5.2171 1.3723 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:13 Heat of formation + Delta-G solvation = -87.081579 kcal Electronic energy + Delta-G solvation = -22672.924350 eV Core-core repulsion = 19396.906911 eV Total energy + Delta-G solvation = -3276.017439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45700 -39.30492 -38.28203 -36.01944 -35.43473 -33.71855 -32.76248 -31.81383 -29.90023 -27.37514 -26.69052 -24.83673 -23.75962 -23.19571 -21.74263 -20.69898 -19.87184 -18.88788 -18.45292 -17.82265 -16.90513 -16.85979 -16.42506 -16.16270 -15.71744 -15.46325 -15.25723 -14.99981 -14.69284 -14.34854 -14.18061 -14.02373 -13.73847 -13.48261 -13.28325 -13.22012 -12.92822 -12.79866 -12.45849 -12.19345 -12.10807 -12.08356 -11.96214 -11.89192 -11.49347 -11.28523 -11.10474 -10.83409 -10.69228 -10.41699 -10.25071 -9.58670 -8.31971 -6.37626 1.27984 1.34963 1.36342 1.46532 1.54219 1.80550 2.31207 2.82055 3.02878 3.44928 3.80676 3.94314 3.98808 4.04681 4.09443 4.16058 4.20841 4.27079 4.31023 4.46526 4.47837 4.51517 4.59621 4.65216 4.73199 4.78269 4.87272 4.90911 4.96682 5.04690 5.08831 5.13092 5.14109 5.22951 5.38560 5.41071 5.64270 5.73901 5.74175 5.87172 6.13143 6.24866 6.49311 6.68784 7.15578 7.28043 8.84811 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037708 B = 0.003479 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.360408 B = 8045.649005 C = 8308.804508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C -0.094 4.094 4 C 0.059 3.941 5 O -0.392 6.392 6 C 0.080 3.920 7 H 0.122 0.878 8 C -0.169 4.169 9 C 0.501 3.499 10 O -0.585 6.585 11 N -0.605 5.605 12 C 0.100 3.900 13 C -0.134 4.134 14 C -0.122 4.122 15 C 0.009 3.991 16 H 0.014 0.986 17 C -0.524 4.524 18 H 0.031 0.969 19 C 0.011 3.989 20 N -0.949 5.949 21 Si 0.957 3.043 22 H -0.254 1.254 23 H -0.303 1.303 24 H -0.250 1.250 25 C 0.140 3.860 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.266 0.734 43 H 0.063 0.937 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.045 -20.863 3.759 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.177 4.177 3 C -0.132 4.132 4 C -0.016 4.016 5 O -0.311 6.311 6 C 0.020 3.980 7 H 0.139 0.861 8 C -0.227 4.227 9 C 0.290 3.710 10 O -0.464 6.464 11 N -0.338 5.338 12 C -0.021 4.021 13 C -0.172 4.172 14 C -0.160 4.160 15 C -0.010 4.010 16 H 0.033 0.967 17 C -0.562 4.562 18 H 0.049 0.951 19 C -0.186 4.186 20 N -0.589 5.589 21 Si 0.783 3.217 22 H -0.180 1.180 23 H -0.231 1.231 24 H -0.174 1.174 25 C 0.017 3.983 26 H 0.133 0.867 27 H 0.114 0.886 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.064 0.936 36 H 0.139 0.861 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.007 -20.295 3.121 27.980 hybrid contribution 0.548 0.973 0.240 1.142 sum -18.458 -19.322 3.361 26.933 Atomic orbital electron populations 1.24078 0.95804 1.02767 0.99642 1.22805 0.96196 0.97544 1.01185 1.20635 0.97772 0.96683 0.98077 1.22753 0.94362 0.85125 0.99407 1.88022 1.54319 1.39202 1.49577 1.21957 0.87864 0.99733 0.88477 0.86092 1.22329 1.02746 1.01573 0.96005 1.21283 0.83688 0.82610 0.83416 1.90666 1.81416 1.48577 1.25759 1.48305 1.17945 1.40867 1.26669 1.22119 1.04646 0.92911 0.82445 1.21951 0.97734 0.98663 0.98879 1.21866 0.98756 0.98149 0.97228 1.19342 0.94890 0.93426 0.93379 0.96740 1.21228 1.13429 1.20253 1.01330 0.95100 1.25918 0.95245 0.94517 1.02923 1.70059 1.26856 1.24980 1.37034 0.85725 0.80490 0.76085 0.79380 1.17985 1.23138 1.17364 1.21313 0.88472 0.90873 0.97654 0.86746 0.88582 0.85831 0.91390 0.91388 0.90985 0.91668 0.88323 0.88811 0.93640 0.86147 0.89295 0.87288 0.91950 0.91690 0.94321 0.92471 0.91906 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 14.32 67.78 0.97 -1.14 16 2 C -0.16 -2.03 9.52 25.65 0.24 -1.78 16 3 C -0.09 -1.63 6.03 29.85 0.18 -1.45 16 4 C 0.06 1.02 5.73 71.98 0.41 1.43 16 5 O -0.39 -10.54 9.54 -130.14 -1.24 -11.79 16 6 C 0.08 1.89 2.28 29.85 0.07 1.95 16 7 H 0.12 1.84 6.80 -2.38 -0.02 1.82 16 8 C -0.17 -3.17 9.19 71.98 0.66 -2.51 16 9 C 0.50 17.48 7.03 87.66 0.62 18.10 16 10 O -0.58 -27.04 15.97 15.81 0.25 -26.78 16 11 N -0.60 -19.95 2.98 -819.75 -2.44 -22.40 16 12 C 0.10 2.18 5.57 86.22 0.48 2.66 16 13 C -0.13 -3.36 5.95 30.53 0.18 -3.18 16 14 C -0.12 -4.57 4.66 30.62 0.14 -4.43 16 15 C 0.01 0.43 1.84 -11.46 -0.02 0.41 16 16 H 0.01 0.71 7.19 -2.39 -0.02 0.70 16 17 C -0.52 -30.28 9.14 25.60 0.23 -30.04 16 18 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 19 C 0.01 0.65 5.45 84.65 0.46 1.11 16 20 N -0.95 -59.92 13.96 21.44 0.30 -59.62 16 21 Si 0.96 44.50 24.39 68.60 1.67 46.17 16 22 H -0.25 -10.79 6.86 99.48 0.68 -10.11 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.25 -10.83 6.53 99.48 0.65 -10.18 16 25 C 0.14 5.94 5.64 86.36 0.49 6.43 16 26 H 0.11 0.92 8.06 -2.91 -0.02 0.90 16 27 H 0.10 1.10 7.84 -2.91 -0.02 1.08 16 28 H 0.12 1.22 8.06 -2.91 -0.02 1.20 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.25 7.79 -2.39 -0.02 1.23 16 31 H 0.07 0.93 7.78 -2.39 -0.02 0.91 16 32 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 33 H 0.10 1.26 7.78 -2.39 -0.02 1.24 16 34 H 0.09 1.45 5.68 -2.39 -0.01 1.43 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.12 1.62 4.52 -2.39 -0.01 1.61 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.60 7.78 -2.38 -0.02 1.58 16 40 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 41 H 0.04 1.54 3.27 -2.38 -0.01 1.53 16 42 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 43 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.05 2.46 7.04 -2.38 -0.02 2.44 16 Total: -1.00 -78.85 342.52 4.54 -74.30 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.88 Total: 12.54 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 5.12 Total: -12.43 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -2.14 Total: -82.02 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.99 Total: -38.57 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.67 Total: 46.17 kcal Total: -78.85 4.54 -74.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.778 kcal (2) G-P(sol) polarization free energy of solvation -78.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds