Wall clock time and date at job start Tue Mar 31 2020 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99720 * 2 1 4 4 C 1.53000 * 109.47387 * 124.99679 * 3 2 1 5 5 O 1.42894 * 109.47390 * 179.97438 * 4 3 2 6 6 C 1.42901 * 114.00233 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.47009 * 330.00643 * 6 5 4 8 8 C 1.53002 * 109.46920 * 90.00408 * 6 5 4 9 9 C 1.50696 * 109.47284 * 210.00170 * 6 5 4 10 10 O 1.21280 * 120.00398 * 349.50172 * 9 6 5 11 11 N 1.34778 * 119.99966 * 169.49433 * 9 6 5 12 12 C 1.46926 * 120.63012 * 354.70349 * 11 9 6 13 13 C 1.53196 * 108.77466 * 126.40932 * 12 11 9 14 14 C 1.53038 * 109.31468 * 54.63548 * 13 12 11 15 15 C 1.53037 * 109.53729 * 298.63439 * 14 13 12 16 16 H 1.09005 * 109.49749 * 301.37939 * 15 14 13 17 17 C 1.50701 * 109.50136 * 181.31826 * 15 14 13 18 18 H 1.07999 * 119.99838 * 240.00076 * 17 15 14 19 19 C 1.37880 * 119.99960 * 59.71760 * 17 15 14 20 20 N 1.31513 * 119.99858 * 0.28339 * 19 17 15 21 21 Si 1.86794 * 120.00028 * 180.27839 * 19 17 15 22 22 H 1.48496 * 109.47144 * 60.00261 * 21 19 17 23 23 H 1.48497 * 109.47329 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47102 * 300.00578 * 21 19 17 25 25 C 1.46930 * 120.63321 * 174.71759 * 11 9 6 26 26 H 1.08006 * 119.99952 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99782 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99743 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47742 * 4.99295 * 3 2 1 30 30 H 1.09008 * 109.46880 * 244.99517 * 3 2 1 31 31 H 1.09006 * 109.47003 * 59.99298 * 4 3 2 32 32 H 1.09003 * 109.47265 * 300.00145 * 4 3 2 33 33 H 1.09004 * 109.46887 * 174.41210 * 8 6 5 34 34 H 1.09005 * 109.46923 * 294.40632 * 8 6 5 35 35 H 1.08995 * 109.47135 * 54.40845 * 8 6 5 36 36 H 1.08996 * 109.58987 * 6.62313 * 12 11 9 37 37 H 1.09003 * 109.58652 * 246.19303 * 12 11 9 38 38 H 1.08997 * 109.50096 * 294.67754 * 13 12 11 39 39 H 1.09000 * 109.49421 * 174.58434 * 13 12 11 40 40 H 1.08996 * 109.46003 * 178.61181 * 14 13 12 41 41 H 1.08996 * 109.46233 * 58.65270 * 14 13 12 42 42 H 0.96997 * 119.99935 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.58660 * 113.80304 * 25 11 9 44 44 H 1.09000 * 109.58365 * 353.37880 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3333 1.1816 5 8 3.7498 2.5705 1.1813 6 6 4.6884 2.6999 2.2510 7 1 4.3355 2.1356 3.1143 8 6 6.0470 2.1545 1.8061 9 6 4.8283 4.1533 2.6237 10 8 4.3409 5.0102 1.9172 11 7 5.4948 4.5010 3.7423 12 6 5.9903 3.4736 4.6684 13 6 7.4874 3.7002 4.9011 14 6 7.7139 5.1371 5.3769 15 6 7.2393 6.1140 4.2987 16 1 7.7841 5.9271 3.3732 17 6 7.4925 7.5280 4.7544 18 1 6.6676 8.2170 4.8602 19 6 8.7764 7.9403 5.0418 20 7 9.7808 7.1011 4.9129 21 14 9.0892 9.6906 5.6141 22 1 8.3419 9.9409 6.8727 23 1 10.5422 9.8807 5.8546 24 1 8.6321 10.6421 4.5696 25 6 5.7395 5.9147 4.0591 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0894 30 1 2.6213 1.4026 -0.9314 31 1 3.7399 0.5066 1.0922 32 1 2.4771 1.2357 2.1131 33 1 6.7866 2.3429 2.5843 34 1 5.9683 1.0814 1.6318 35 1 6.3538 2.6507 0.8854 36 1 5.8332 2.4855 4.2360 37 1 5.4577 3.5487 5.6165 38 1 8.0294 3.5356 3.9699 39 1 7.8470 3.0049 5.6596 40 1 8.7757 5.2936 5.5668 41 1 7.1519 5.3085 6.2949 42 1 10.6841 7.3913 5.1148 43 1 5.1864 6.1889 4.9574 44 1 5.4169 6.5373 3.2246 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:16 Heat of formation + Delta-G solvation = -74.212091 kcal Electronic energy + Delta-G solvation = -22568.913819 eV Core-core repulsion = 19293.454442 eV Total energy + Delta-G solvation = -3275.459376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.97926 -38.05932 -36.61630 -35.25623 -33.63550 -31.84143 -31.22624 -29.98902 -29.05410 -25.41518 -25.06329 -23.59406 -22.77996 -21.69046 -20.28387 -19.83126 -18.25219 -17.25407 -16.63181 -16.18867 -16.11923 -15.22436 -15.04750 -14.60500 -14.54053 -13.94537 -13.76660 -13.49134 -13.26944 -12.93277 -12.80352 -12.64009 -12.16862 -12.03359 -11.99327 -11.80308 -11.60403 -11.37563 -11.10104 -10.97069 -10.84235 -10.76738 -10.35132 -9.97983 -9.86972 -9.76228 -9.66133 -9.46840 -9.10172 -8.82672 -8.39387 -7.91154 -6.03002 -4.10033 1.93983 3.00352 3.10741 3.31224 3.35519 3.39175 3.92363 4.42016 4.65167 4.73069 4.81502 4.86215 4.95507 5.09285 5.16473 5.22497 5.24770 5.30711 5.55072 5.58049 5.58867 5.65116 5.71543 5.75751 5.84373 6.04236 6.16346 6.30528 6.32017 6.37244 6.45499 6.45742 6.65103 6.77689 6.91788 7.08876 7.16489 7.31887 7.67592 7.89491 7.98928 8.05999 8.36410 8.64899 8.93348 9.54843 11.02492 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.003264 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.627260 B = 8576.786343 C = 8929.299197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.094 4.094 4 C 0.064 3.936 5 O -0.358 6.358 6 C 0.074 3.926 7 H 0.080 0.920 8 C -0.174 4.174 9 C 0.511 3.489 10 O -0.530 6.530 11 N -0.602 5.602 12 C 0.104 3.896 13 C -0.135 4.135 14 C -0.113 4.113 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.890 5.890 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.119 3.881 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.036 0.964 42 H 0.261 0.739 43 H 0.055 0.945 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 -16.278 -3.593 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.170 4.170 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.012 3.988 7 H 0.098 0.902 8 C -0.231 4.231 9 C 0.297 3.703 10 O -0.407 6.407 11 N -0.336 5.336 12 C -0.019 4.019 13 C -0.173 4.173 14 C -0.151 4.151 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.002 4.002 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.704 -15.669 -4.092 19.412 hybrid contribution 0.363 0.563 0.629 0.918 sum -10.341 -15.107 -3.463 18.632 Atomic orbital electron populations 1.23910 0.95918 1.02032 1.00798 1.22819 0.96017 0.98019 1.00195 1.20645 0.98019 0.95821 0.98600 1.22503 0.93815 0.86630 0.98342 1.88038 1.54353 1.36985 1.48219 1.21913 0.91153 0.94932 0.90774 0.90234 1.22315 0.95778 1.01220 1.03831 1.20205 0.78930 0.90063 0.81136 1.90675 1.47258 1.51570 1.51166 1.48246 1.54689 1.09001 1.21639 1.21858 0.96540 0.90319 0.93192 1.22026 0.93626 1.00591 1.01098 1.21634 1.04782 0.90416 0.98254 1.18975 0.88525 0.94887 0.95498 0.95223 1.21041 0.93007 0.95903 1.45353 0.92504 1.24931 0.96120 0.97389 0.95352 1.69855 0.99359 1.34658 1.48952 0.86631 0.76989 0.84970 0.79267 1.20258 1.21319 1.20208 1.22012 0.99899 0.78113 1.00141 0.88368 0.88372 0.87222 0.90443 0.89949 0.93165 0.93273 0.90122 0.91674 0.90896 0.91134 0.91758 0.92245 0.92391 0.88530 0.94534 0.92913 0.92622 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 14.32 29.01 0.42 -0.99 16 2 C -0.15 -1.21 9.52 -36.03 -0.34 -1.55 16 3 C -0.09 -0.91 6.03 -27.88 -0.17 -1.08 16 4 C 0.06 0.69 5.73 37.16 0.21 0.90 16 5 O -0.36 -5.42 9.54 -54.92 -0.52 -5.94 16 6 C 0.07 1.06 2.28 -27.88 -0.06 1.00 16 7 H 0.08 0.93 6.77 -51.93 -0.35 0.58 16 8 C -0.17 -2.18 9.11 37.16 0.34 -1.84 16 9 C 0.51 9.71 7.03 -10.99 -0.08 9.63 16 10 O -0.53 -12.34 15.97 -14.13 -0.23 -12.57 16 11 N -0.60 -11.20 2.97 -172.77 -0.51 -11.71 16 12 C 0.10 1.56 5.50 -3.71 -0.02 1.54 16 13 C -0.14 -2.30 5.96 -26.61 -0.16 -2.46 16 14 C -0.11 -2.47 4.96 -26.69 -0.13 -2.61 16 15 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.51 -13.88 8.57 -34.44 -0.30 -14.17 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.77 11.30 55.43 0.63 -24.14 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.12 2.59 5.64 -3.71 -0.02 2.57 16 26 H 0.10 0.72 7.84 -52.48 -0.41 0.31 16 27 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 28 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 30 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.05 0.45 8.01 -51.93 -0.42 0.03 16 32 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.08 1.01 5.57 -51.93 -0.29 0.72 16 34 H 0.06 0.63 8.01 -51.93 -0.42 0.22 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.83 4.71 -51.93 -0.24 0.59 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.10 2.41 6.03 -51.93 -0.31 2.09 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.86 7.04 -51.93 -0.37 1.50 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -31.04 349.37 -8.37 -39.41 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.37 Total: 0.28 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.61 Total: -6.65 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.11 Total: -35.85 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.75 Total: -18.51 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.04 -8.37 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.800 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds