Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00292 * 2 1 4 4 C 1.52993 * 109.47314 * 124.99805 * 3 2 1 5 5 O 1.42897 * 109.47184 * 180.02562 * 4 3 2 6 6 C 1.42904 * 113.99824 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47071 * 329.99572 * 6 5 4 8 8 C 1.52992 * 109.47290 * 90.00073 * 6 5 4 9 9 C 1.50706 * 109.46954 * 209.99966 * 6 5 4 10 10 O 1.21287 * 119.99516 * 355.00154 * 9 6 5 11 11 N 1.34773 * 120.00032 * 174.99928 * 9 6 5 12 12 C 1.46931 * 120.60493 * 0.02562 * 11 9 6 13 13 C 1.53196 * 108.77131 * 233.53550 * 12 11 9 14 14 C 1.53039 * 109.33748 * 305.41286 * 13 12 11 15 15 C 1.53045 * 109.53694 * 61.35198 * 14 13 12 16 16 H 1.08993 * 109.49902 * 58.61908 * 15 14 13 17 17 C 1.50702 * 109.49612 * 178.68303 * 15 14 13 18 18 H 1.07998 * 119.99756 * 119.99608 * 17 15 14 19 19 C 1.37881 * 119.99853 * 299.99779 * 17 15 14 20 20 N 1.31513 * 119.99947 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99699 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47006 * 90.00068 * 21 19 17 23 23 H 1.48501 * 109.46918 * 209.99876 * 21 19 17 24 24 H 1.48501 * 109.47160 * 329.99603 * 21 19 17 25 25 C 1.46928 * 120.62770 * 180.02562 * 11 9 6 26 26 H 1.07997 * 119.99998 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.00114 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.99843 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46554 * 4.99634 * 3 2 1 30 30 H 1.09000 * 109.46764 * 245.00226 * 3 2 1 31 31 H 1.09003 * 109.46905 * 59.99874 * 4 3 2 32 32 H 1.09002 * 109.47043 * 300.00512 * 4 3 2 33 33 H 1.08994 * 109.47472 * 59.99745 * 8 6 5 34 34 H 1.09003 * 109.47007 * 179.97438 * 8 6 5 35 35 H 1.09002 * 109.47422 * 299.99564 * 8 6 5 36 36 H 1.08996 * 109.56502 * 113.76244 * 12 11 9 37 37 H 1.09001 * 109.61713 * 353.33665 * 12 11 9 38 38 H 1.09002 * 109.49815 * 185.44599 * 13 12 11 39 39 H 1.09000 * 109.49595 * 65.37996 * 13 12 11 40 40 H 1.09001 * 109.45915 * 181.36781 * 14 13 12 41 41 H 1.08995 * 109.45917 * 301.32981 * 14 13 12 42 42 H 0.97000 * 119.99195 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.58597 * 6.64243 * 25 11 9 44 44 H 1.09001 * 109.69741 * 246.29061 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7491 2.5708 1.1819 6 6 4.6886 2.6996 2.2510 7 1 4.3366 2.1344 3.1140 8 6 6.0470 2.1554 1.8046 9 6 4.8279 4.1528 2.6251 10 8 4.2563 5.0034 1.9763 11 7 5.5875 4.5072 3.6805 12 6 6.2861 3.4878 4.4752 13 6 5.9134 3.6714 5.9498 14 6 6.2114 5.1119 6.3722 15 6 5.3657 6.0756 5.5366 16 1 4.3092 5.8470 5.6758 17 6 5.6359 7.4918 5.9754 18 1 6.0274 8.2102 5.2703 19 6 5.3834 7.8703 7.2769 20 7 4.9072 6.9954 8.1356 21 14 5.7177 9.6259 7.8205 22 1 4.5012 10.4503 7.6069 23 1 6.0771 9.6380 9.2614 24 1 6.8405 10.1850 7.0256 25 6 5.7324 5.9198 4.0577 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7399 0.5065 1.0920 32 1 2.4772 1.2356 2.1130 33 1 6.3990 2.7206 0.9416 34 1 6.7637 2.2541 2.6200 35 1 5.9464 1.1043 1.5341 36 1 7.3629 3.6045 4.3532 37 1 5.9842 2.4945 4.1430 38 1 6.4986 2.9845 6.5612 39 1 4.8518 3.4648 6.0851 40 1 5.9698 5.2382 7.4275 41 1 7.2685 5.3254 6.2138 42 1 4.7293 7.2619 9.0511 43 1 5.0653 6.5307 3.4496 44 1 6.7632 6.2379 3.9015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = -72.074807 kcal Electronic energy + Delta-G solvation = -22561.380029 eV Core-core repulsion = 19286.013332 eV Total energy + Delta-G solvation = -3275.366697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98745 -38.05343 -36.60329 -35.23821 -33.68279 -31.92470 -31.16885 -29.96910 -29.04105 -25.44437 -25.09954 -23.56846 -22.74656 -21.73533 -20.23527 -19.76223 -18.44694 -17.18037 -16.59058 -16.24238 -16.07093 -15.26501 -14.98422 -14.78242 -14.35561 -13.86240 -13.77243 -13.54323 -13.28899 -12.97600 -12.73491 -12.67200 -12.28057 -12.11837 -11.97626 -11.79317 -11.59254 -11.35326 -11.08161 -10.99054 -10.82292 -10.73385 -10.34435 -9.96033 -9.86966 -9.74978 -9.63221 -9.45653 -9.10323 -8.81570 -8.39690 -7.91178 -6.02915 -4.09884 1.97118 3.02354 3.09956 3.29870 3.36475 3.40063 3.92585 4.42144 4.65120 4.73070 4.83128 4.88924 4.95178 5.08429 5.16077 5.23518 5.25581 5.30378 5.45849 5.56368 5.59361 5.62904 5.73026 5.75465 5.85889 6.01984 6.09060 6.30502 6.35051 6.37152 6.45803 6.48712 6.64661 6.77519 6.92265 7.08620 7.16952 7.32175 7.68040 7.89748 7.99039 8.06338 8.36605 8.65416 8.93807 9.55066 11.02648 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026349 B = 0.003420 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.413224 B = 8185.384257 C = 8453.061917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.072 3.928 7 H 0.083 0.917 8 C -0.176 4.176 9 C 0.510 3.490 10 O -0.530 6.530 11 N -0.601 5.601 12 C 0.103 3.897 13 C -0.136 4.136 14 C -0.113 4.113 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.118 3.882 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.079 0.921 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 -16.061 -10.327 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.275 6.275 6 C 0.011 3.989 7 H 0.101 0.899 8 C -0.234 4.234 9 C 0.296 3.704 10 O -0.407 6.407 11 N -0.335 5.335 12 C -0.020 4.020 13 C -0.174 4.174 14 C -0.151 4.151 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.552 4.552 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.002 4.002 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.861 -15.460 -10.634 18.783 hybrid contribution 0.229 0.561 0.700 0.925 sum -0.632 -14.899 -9.934 17.918 Atomic orbital electron populations 1.23918 0.95928 1.02074 1.00608 1.22807 0.96024 0.97970 1.00364 1.20639 0.98038 0.95903 0.98457 1.22512 0.93823 0.86455 0.98521 1.88025 1.54342 1.37058 1.48110 1.21885 0.90965 0.95031 0.91012 0.89925 1.22401 0.96013 1.01556 1.03430 1.20205 0.79442 0.89988 0.80750 1.90680 1.46176 1.51913 1.51898 1.48232 1.47696 1.09294 1.28263 1.21939 0.96632 0.90576 0.92808 1.22027 1.01126 1.00651 0.93630 1.21633 0.98495 0.90400 1.04535 1.18971 0.96161 0.95086 0.87718 0.95264 1.21078 1.43453 0.95027 0.95667 0.92443 1.24938 0.94898 0.97329 0.96669 1.69872 1.44690 1.33756 1.04498 0.86571 0.78660 0.84942 0.77699 1.20654 1.21259 1.19874 1.21999 1.00683 0.78164 0.99372 0.88323 0.88363 0.87255 0.90374 0.90055 0.93220 0.93113 0.91154 0.90148 0.91591 0.91645 0.90921 0.92378 0.92381 0.88572 0.94509 0.92981 0.90273 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 14.32 29.02 0.42 -1.07 16 2 C -0.15 -1.27 9.52 -36.02 -0.34 -1.62 16 3 C -0.09 -0.94 6.03 -27.88 -0.17 -1.11 16 4 C 0.06 0.71 5.73 37.15 0.21 0.92 16 5 O -0.36 -5.44 9.53 -55.09 -0.52 -5.97 16 6 C 0.07 1.04 2.30 -27.88 -0.06 0.97 16 7 H 0.08 1.03 7.08 -51.93 -0.37 0.66 16 8 C -0.18 -1.96 9.10 37.15 0.34 -1.62 16 9 C 0.51 9.70 7.12 -10.98 -0.08 9.62 16 10 O -0.53 -12.37 15.92 -14.31 -0.23 -12.60 16 11 N -0.60 -11.18 2.97 -172.78 -0.51 -11.69 16 12 C 0.10 1.54 4.97 -3.71 -0.02 1.53 16 13 C -0.14 -2.35 6.08 -26.61 -0.16 -2.51 16 14 C -0.11 -2.48 4.96 -26.69 -0.13 -2.62 16 15 C 0.04 0.98 2.25 -91.67 -0.21 0.77 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.88 11.31 55.43 0.63 -24.25 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 25 C 0.12 2.58 5.65 -3.73 -0.02 2.56 16 26 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 27 H 0.10 0.63 8.06 -52.48 -0.42 0.21 16 28 H 0.11 0.75 8.06 -52.48 -0.42 0.33 16 29 H 0.08 0.86 7.79 -51.93 -0.40 0.46 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.81 5.41 -51.93 -0.28 0.53 16 35 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.85 4.67 -51.93 -0.24 0.61 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.08 1.88 7.01 -51.93 -0.36 1.51 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -31.30 349.44 -8.40 -39.70 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.39 Total: 0.19 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.62 Total: -6.74 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.11 Total: -35.94 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.75 Total: -18.57 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.30 -8.40 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.376 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds