Wall clock time and date at job start Tue Mar 31 2020 05:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46525 * 2 1 4 4 O 1.42891 * 109.47273 * 239.99654 * 2 1 3 5 5 C 1.42902 * 114.00106 * 90.00527 * 4 2 1 6 6 C 1.52998 * 109.47202 * 179.97438 * 5 4 2 7 7 C 1.52993 * 117.50056 * 243.61559 * 6 5 4 8 8 C 1.52993 * 60.00497 * 252.50918 * 7 6 5 9 9 C 1.50698 * 109.46930 * 119.99217 * 2 1 3 10 10 O 1.21285 * 119.99835 * 109.51459 * 9 2 1 11 11 N 1.34777 * 120.00459 * 289.51888 * 9 2 1 12 12 C 1.46997 * 120.61035 * 354.71062 * 11 9 2 13 13 C 1.53194 * 108.73491 * 126.39005 * 12 11 9 14 14 C 1.53042 * 109.34230 * 54.62151 * 13 12 11 15 15 C 1.53039 * 109.53566 * 298.61884 * 14 13 12 16 16 H 1.09005 * 109.49625 * 301.37987 * 15 14 13 17 17 C 1.50702 * 109.49687 * 181.31894 * 15 14 13 18 18 H 1.08001 * 119.99765 * 239.99729 * 17 15 14 19 19 C 1.37877 * 120.00086 * 59.99590 * 17 15 14 20 20 N 1.31509 * 119.99906 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99640 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47358 * 59.99941 * 21 19 17 23 23 H 1.48501 * 109.46978 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47062 * 299.99725 * 21 19 17 25 25 C 1.46921 * 120.63335 * 174.68745 * 11 9 2 26 26 H 1.08994 * 109.47254 * 294.40982 * 1 2 3 27 27 H 1.09004 * 109.46899 * 54.41626 * 1 2 3 28 28 H 1.09000 * 109.46651 * 174.40654 * 1 2 3 29 29 H 1.09004 * 109.46398 * 299.99279 * 5 4 2 30 30 H 1.08993 * 109.47513 * 59.99609 * 5 4 2 31 31 H 1.09007 * 115.55234 * 29.32792 * 6 5 4 32 32 H 1.09006 * 117.49861 * 0.02562 * 7 6 5 33 33 H 1.09007 * 117.50159 * 145.02099 * 7 6 5 34 34 H 1.09000 * 117.50265 * 252.51124 * 8 7 6 35 35 H 1.09001 * 117.49630 * 107.47998 * 8 7 6 36 36 H 1.09001 * 109.63081 * 6.60062 * 12 11 9 37 37 H 1.08995 * 109.57931 * 246.14496 * 12 11 9 38 38 H 1.09005 * 109.50073 * 294.65034 * 13 12 11 39 39 H 1.09002 * 109.49831 * 174.58963 * 13 12 11 40 40 H 1.08994 * 109.46004 * 58.63601 * 14 13 12 41 41 H 1.08997 * 109.45790 * 178.59639 * 14 13 12 42 42 H 0.97001 * 119.99478 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.58856 * 113.84084 * 25 11 9 44 44 H 1.08998 * 109.70441 * 353.48992 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2003 0.1829 -2.2940 6 6 2.7093 -0.6407 -3.4787 7 6 4.1062 -0.3199 -4.0139 8 6 2.8683 0.0760 -4.8211 9 6 2.0323 -0.7102 1.2306 10 8 2.5652 -1.7950 1.1295 11 7 1.8893 -0.1401 2.4434 12 6 1.3514 1.2219 2.5715 13 6 0.1702 1.1948 3.5465 14 6 0.6188 0.5689 4.8690 15 6 1.0757 -0.8712 4.6246 16 1 0.2568 -1.4436 4.1887 17 6 1.4867 -1.4972 5.9324 18 1 2.4955 -1.8596 6.0641 19 6 0.5748 -1.6074 6.9607 20 7 -0.6537 -1.1666 6.8001 21 14 1.0846 -2.3828 8.5819 22 1 2.2009 -1.6030 9.1743 23 1 -0.0702 -2.3825 9.5155 24 1 1.5281 -3.7801 8.3445 25 6 2.2674 -0.8682 3.6622 26 1 -0.3633 0.4247 0.9357 27 1 -0.3633 0.5980 -0.8358 28 1 -0.3632 -1.0228 -0.1002 29 1 1.2539 0.6545 -2.5588 30 1 2.9321 0.9512 -2.0450 31 1 2.3891 -1.6825 -3.4992 32 1 4.6628 0.4778 -3.5217 33 1 4.7055 -1.1506 -4.3865 34 1 2.6530 -0.4943 -5.7247 35 1 2.6102 1.1343 -4.8601 36 1 1.0132 1.5752 1.5973 37 1 2.1262 1.8861 2.9545 38 1 -0.6400 0.6031 3.1202 39 1 -0.1776 2.2123 3.7251 40 1 1.4453 1.1468 5.2824 41 1 -0.2135 0.5714 5.5727 42 1 -1.2951 -1.2437 7.5237 43 1 3.1170 -0.3745 4.1341 44 1 2.5354 -1.8940 3.4092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:03 Heat of formation + Delta-G solvation = -64.589292 kcal Electronic energy + Delta-G solvation = -22711.458981 eV Core-core repulsion = 19436.416881 eV Total energy + Delta-G solvation = -3275.042101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98498 -38.38861 -36.98631 -36.28943 -33.63581 -31.76744 -31.19261 -29.85569 -27.22876 -25.33350 -25.02856 -23.06650 -22.63096 -21.69449 -20.98517 -19.95921 -18.24865 -17.40656 -16.65224 -16.21596 -15.95283 -15.52737 -14.76832 -14.68782 -14.44109 -14.18973 -13.79642 -13.44637 -13.13021 -12.83748 -12.68129 -12.62194 -12.08727 -12.00785 -11.94960 -11.80409 -11.57440 -11.12043 -10.96945 -10.85690 -10.78183 -10.69565 -10.46406 -10.33946 -9.97163 -9.83627 -9.70250 -9.46499 -9.08996 -8.82411 -8.39290 -7.90842 -6.02910 -4.09911 2.99721 3.03572 3.31335 3.35618 3.39088 3.53832 3.91168 4.42062 4.55703 4.63720 4.70928 4.83345 4.87287 5.06991 5.11629 5.24720 5.25743 5.30718 5.35895 5.43818 5.57982 5.61748 5.63318 5.64360 5.75497 5.84133 5.98408 6.04906 6.16701 6.30601 6.37296 6.45876 6.65398 6.77892 6.92252 7.09653 7.16908 7.32070 7.67771 7.89671 7.99137 8.06043 8.36583 8.65443 8.93504 9.55006 11.02630 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037111 B = 0.003413 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.304258 B = 8201.350346 C = 8579.447243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.079 0.921 4 O -0.354 6.354 5 C 0.090 3.910 6 C -0.151 4.151 7 C -0.177 4.177 8 C -0.175 4.175 9 C 0.511 3.489 10 O -0.530 6.530 11 N -0.602 5.602 12 C 0.104 3.896 13 C -0.135 4.135 14 C -0.113 4.113 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.119 3.881 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.096 0.904 42 H 0.261 0.739 43 H 0.055 0.945 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 8.594 -17.417 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.097 0.903 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.169 4.169 7 C -0.214 4.214 8 C -0.212 4.212 9 C 0.297 3.703 10 O -0.406 6.406 11 N -0.336 5.336 12 C -0.019 4.019 13 C -0.174 4.174 14 C -0.151 4.151 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.002 4.002 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.786 7.819 -17.376 19.257 hybrid contribution 0.088 0.011 0.943 0.948 sum 2.874 7.830 -16.433 18.428 Atomic orbital electron populations 1.22318 0.93514 1.04068 1.03260 1.21911 0.95215 0.95900 0.85777 0.90278 1.88053 1.86507 1.33868 1.18757 1.22086 0.99045 0.91990 0.85525 1.22113 1.00371 1.01170 0.93216 1.23065 0.90902 1.03600 1.03836 1.22973 1.02651 1.01038 0.94560 1.20195 0.79705 0.86306 0.84123 1.90679 1.42870 1.21214 1.85832 1.48255 1.62957 1.16098 1.06268 1.21868 0.97017 0.83188 0.99823 1.22028 0.96612 1.00431 0.98288 1.21632 1.02017 0.96882 0.94522 1.18972 0.92406 0.93378 0.93104 0.95224 1.21043 0.97551 1.39183 0.97558 0.92504 1.24929 0.94857 0.95307 0.98682 1.69857 1.03646 1.46520 1.32793 0.86635 0.77949 0.80006 0.83286 1.20255 1.21315 1.20208 1.22003 0.99160 0.96275 0.82732 0.90113 0.91666 0.90878 0.92812 0.93254 0.86656 0.88688 0.88572 0.88437 0.88738 0.91129 0.91757 0.92242 0.92396 0.94531 0.88558 0.92915 0.92640 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.11 37.16 0.34 -1.85 16 2 C 0.07 1.06 2.28 -27.88 -0.06 1.00 16 3 H 0.08 0.92 6.77 -51.93 -0.35 0.57 16 4 O -0.35 -5.43 9.54 -54.92 -0.52 -5.96 16 5 C 0.09 1.00 6.03 37.16 0.22 1.22 16 6 C -0.15 -1.54 6.06 -90.62 -0.55 -2.09 16 7 C -0.18 -1.56 10.18 -26.74 -0.27 -1.84 16 8 C -0.18 -1.35 10.25 -26.73 -0.27 -1.62 16 9 C 0.51 9.74 7.03 -10.99 -0.08 9.66 16 10 O -0.53 -12.38 15.97 -14.14 -0.23 -12.61 16 11 N -0.60 -11.20 2.97 -172.72 -0.51 -11.72 16 12 C 0.10 1.56 5.50 -3.67 -0.02 1.54 16 13 C -0.14 -2.30 5.95 -26.61 -0.16 -2.46 16 14 C -0.11 -2.47 4.96 -26.69 -0.13 -2.60 16 15 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -24.78 11.31 55.43 0.63 -24.15 16 21 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.12 2.60 5.64 -3.72 -0.02 2.58 16 26 H 0.08 1.01 5.56 -51.93 -0.29 0.72 16 27 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.50 8.01 -51.93 -0.42 0.08 16 30 H 0.05 0.49 7.82 -51.93 -0.41 0.09 16 31 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.83 4.72 -51.93 -0.24 0.59 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.87 7.05 -51.93 -0.37 1.50 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -31.16 346.76 -9.41 -40.57 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.38 Total: 0.82 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.60 Total: -8.24 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.11 Total: -35.87 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.75 Total: -18.57 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.16 -9.41 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.019 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds