Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46943 * 2 1 4 4 O 1.42904 * 109.47162 * 119.99311 * 2 1 3 5 5 C 1.42893 * 114.00292 * 270.00248 * 4 2 1 6 6 C 1.53007 * 109.47042 * 179.97438 * 5 4 2 7 7 C 1.52996 * 117.49956 * 243.61914 * 6 5 4 8 8 C 1.52990 * 60.00201 * 252.51388 * 7 6 5 9 9 C 1.50698 * 109.47236 * 239.99479 * 2 1 3 10 10 O 1.21274 * 120.00423 * 244.99660 * 9 2 1 11 11 N 1.34783 * 119.99922 * 65.00278 * 9 2 1 12 12 C 1.46928 * 120.62874 * 0.02562 * 11 9 2 13 13 C 1.53191 * 108.77343 * 126.37163 * 12 11 9 14 14 C 1.53039 * 109.31416 * 54.63452 * 13 12 11 15 15 C 1.53070 * 109.65812 * 298.69913 * 14 13 12 16 16 H 1.08997 * 109.38860 * 301.27396 * 15 14 13 17 17 C 1.50703 * 109.62238 * 181.16791 * 15 14 13 18 18 H 1.08001 * 119.99716 * 240.10879 * 17 15 14 19 19 C 1.37879 * 119.99900 * 60.10710 * 17 15 14 20 20 N 1.31513 * 119.99794 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 119.99849 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47389 * 60.00202 * 21 19 17 23 23 H 1.48504 * 109.47349 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47190 * 299.99935 * 21 19 17 25 25 C 1.46919 * 120.63144 * 179.97438 * 11 9 2 26 26 H 1.09001 * 109.46881 * 299.99966 * 1 2 3 27 27 H 1.08998 * 109.47186 * 60.00379 * 1 2 3 28 28 H 1.08998 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47293 * 299.99687 * 5 4 2 30 30 H 1.08997 * 109.47451 * 60.00102 * 5 4 2 31 31 H 1.08998 * 115.54852 * 29.33545 * 6 5 4 32 32 H 1.09003 * 117.49720 * 0.02562 * 7 6 5 33 33 H 1.09002 * 117.49656 * 145.01679 * 7 6 5 34 34 H 1.09004 * 117.50003 * 252.51352 * 8 7 6 35 35 H 1.09008 * 117.52172 * 107.48227 * 8 7 6 36 36 H 1.08998 * 109.58787 * 246.16207 * 12 11 9 37 37 H 1.08999 * 109.58470 * 6.58560 * 12 11 9 38 38 H 1.09002 * 109.49529 * 174.58688 * 13 12 11 39 39 H 1.09005 * 109.49968 * 294.64599 * 13 12 11 40 40 H 1.09007 * 109.45640 * 58.65727 * 14 13 12 41 41 H 1.09002 * 109.45879 * 178.61277 * 14 13 12 42 42 H 0.97001 * 119.99962 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.58751 * 353.41659 * 25 11 9 44 44 H 1.08996 * 109.58750 * 113.69843 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.2001 0.1831 2.2941 6 6 2.7079 -0.6406 3.4793 7 6 1.8119 -0.7250 4.7166 8 6 3.0896 0.1157 4.7533 9 6 2.0324 -0.7105 -1.2304 10 8 2.6531 -1.7467 -1.1214 11 7 1.7920 -0.1943 -2.4520 12 6 1.0421 1.0605 -2.6001 13 6 1.8703 2.0328 -3.4459 14 6 2.2412 1.3621 -4.7706 15 6 3.0885 0.1169 -4.4978 16 1 3.9870 0.4032 -3.9511 17 6 3.4773 -0.5268 -5.8038 18 1 3.1752 -1.5416 -6.0166 19 6 4.2186 0.1799 -6.7269 20 7 4.5860 1.4158 -6.4678 21 14 4.6999 -0.6178 -8.3459 22 1 3.4748 -1.0050 -9.0905 23 1 5.4889 0.3444 -9.1565 24 1 5.5191 -1.8269 -8.0778 25 6 2.2757 -0.8751 -3.6608 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 2.9320 0.9514 2.0450 30 1 1.2538 0.6548 2.5589 31 1 3.2956 -1.5218 3.2219 32 1 0.8605 -0.1940 4.6861 33 1 1.8098 -1.6620 5.2734 34 1 3.9282 -0.2682 5.3343 35 1 2.9794 1.2002 4.7470 36 1 0.0922 0.8621 -3.0964 37 1 0.8595 1.4952 -1.6174 38 1 1.2859 2.9313 -3.6442 39 1 2.7787 2.3015 -2.9067 40 1 1.3322 1.0721 -5.2977 41 1 2.8097 2.0607 -5.3846 42 1 5.1079 1.9128 -7.1171 43 1 2.9070 -1.7175 -3.3778 44 1 1.4268 -1.2339 -4.2426 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -62.580246 kcal Electronic energy + Delta-G solvation = -22679.706696 eV Core-core repulsion = 19404.751714 eV Total energy + Delta-G solvation = -3274.954982 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.99797 -38.38471 -36.98248 -36.28077 -33.68660 -31.86859 -31.13302 -29.83292 -27.22457 -25.33734 -25.08200 -23.06135 -22.60523 -21.73774 -20.95995 -19.87968 -18.43367 -17.40072 -16.63430 -16.20540 -15.88878 -15.38281 -14.97975 -14.73311 -14.40529 -14.18980 -13.64515 -13.51260 -13.16885 -12.91033 -12.71051 -12.50040 -12.25173 -12.08430 -11.89479 -11.78675 -11.64097 -11.07204 -10.96848 -10.83078 -10.76247 -10.68210 -10.51271 -10.32593 -9.95937 -9.82133 -9.68025 -9.44881 -9.10295 -8.82650 -8.39206 -7.90978 -6.02695 -4.09720 3.00873 3.03228 3.31460 3.35729 3.39170 3.55607 3.89982 4.42256 4.56103 4.65391 4.69527 4.83743 4.87850 5.02546 5.10745 5.24748 5.28066 5.30267 5.37055 5.46239 5.48058 5.58394 5.60386 5.63115 5.74764 5.84423 6.00462 6.02132 6.09540 6.30472 6.37254 6.45724 6.64749 6.77523 6.92786 7.09409 7.17172 7.32145 7.67929 7.89834 7.99181 8.06217 8.36682 8.65622 8.93784 9.55164 11.02947 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030723 B = 0.003444 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.143371 B = 8127.863877 C = 8364.041277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.072 3.928 3 H 0.083 0.917 4 O -0.353 6.353 5 C 0.090 3.910 6 C -0.150 4.150 7 C -0.178 4.178 8 C -0.175 4.175 9 C 0.511 3.489 10 O -0.530 6.530 11 N -0.601 5.601 12 C 0.103 3.897 13 C -0.136 4.136 14 C -0.113 4.113 15 C 0.041 3.959 16 H 0.029 0.971 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.890 5.890 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.118 3.882 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.095 0.905 42 H 0.261 0.739 43 H 0.079 0.921 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 3.136 16.875 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.011 3.989 3 H 0.101 0.899 4 O -0.271 6.271 5 C 0.013 3.987 6 C -0.169 4.169 7 C -0.215 4.215 8 C -0.212 4.212 9 C 0.297 3.703 10 O -0.406 6.406 11 N -0.335 5.335 12 C -0.020 4.020 13 C -0.174 4.174 14 C -0.151 4.151 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.002 4.002 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.273 2.519 16.857 18.946 hybrid contribution 0.201 0.066 -0.921 0.945 sum -8.073 2.585 15.936 18.050 Atomic orbital electron populations 1.22401 0.93900 1.03919 1.03155 1.21889 0.94903 0.96261 0.85879 0.89940 1.88039 1.86542 1.33862 1.18679 1.22093 0.98858 0.92124 0.85584 1.22125 1.03954 1.02520 0.88260 1.23060 0.94880 1.02115 1.01424 1.22971 0.99260 0.98829 1.00107 1.20186 0.80380 0.85689 0.84090 1.90678 1.40247 1.23670 1.86009 1.48230 1.54793 1.24301 1.06170 1.21936 0.95075 0.84910 1.00031 1.22024 0.99124 0.97135 0.99142 1.21637 0.99158 1.00318 0.93957 1.18961 0.93504 0.91267 0.94124 0.95282 1.21038 1.33665 0.99508 1.01103 0.92484 1.24934 0.95569 0.94876 0.98415 1.69862 1.37713 1.09588 1.35662 0.86630 0.78619 0.79171 0.83427 1.20248 1.21319 1.20204 1.21995 0.98241 0.96938 0.83058 0.91643 0.90143 0.91128 0.92762 0.93186 0.86576 0.88751 0.88641 0.88398 0.88692 0.91637 0.90940 0.92372 0.92377 0.94515 0.88626 0.92917 0.90267 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 9.10 37.16 0.34 -1.64 16 2 C 0.07 1.03 2.30 -27.88 -0.06 0.97 16 3 H 0.08 1.02 7.08 -51.93 -0.37 0.65 16 4 O -0.35 -5.45 9.53 -55.09 -0.52 -5.98 16 5 C 0.09 1.02 6.03 37.16 0.22 1.25 16 6 C -0.15 -1.58 6.06 -90.62 -0.55 -2.13 16 7 C -0.18 -1.50 10.18 -26.74 -0.27 -1.77 16 8 C -0.17 -1.41 10.25 -26.74 -0.27 -1.68 16 9 C 0.51 9.72 7.12 -10.98 -0.08 9.64 16 10 O -0.53 -12.39 15.92 -14.30 -0.23 -12.62 16 11 N -0.60 -11.18 2.98 -172.81 -0.51 -11.69 16 12 C 0.10 1.54 4.97 -3.71 -0.02 1.53 16 13 C -0.14 -2.34 6.08 -26.61 -0.16 -2.50 16 14 C -0.11 -2.48 4.96 -26.67 -0.13 -2.62 16 15 C 0.04 1.00 2.25 -91.66 -0.21 0.79 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.51 -13.94 8.57 -34.44 -0.30 -14.23 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -24.90 11.33 55.43 0.63 -24.27 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.12 2.58 5.65 -3.74 -0.02 2.56 16 26 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 27 H 0.08 0.81 5.42 -51.93 -0.28 0.53 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.05 0.47 7.60 -51.93 -0.39 0.07 16 31 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.85 4.66 -51.93 -0.24 0.61 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 2.40 6.06 -51.93 -0.31 2.08 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.08 1.88 7.01 -51.93 -0.36 1.52 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -31.34 346.85 -9.44 -40.77 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.40 Total: 0.65 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -1.60 Total: -8.20 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.11 Total: -35.96 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.75 Total: -18.59 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.34 -9.44 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.806 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds