Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00230 * 2 1 4 4 C 1.50704 * 109.47090 * 89.99519 * 3 2 1 5 5 C 1.29982 * 118.56290 * 95.00117 * 4 3 2 6 6 C 1.50389 * 122.51161 * 180.43182 * 5 4 3 7 7 C 1.53125 * 109.59556 * 343.37807 * 6 5 4 8 8 O 1.43308 * 108.41399 * 47.82310 * 7 6 5 9 9 C 1.42898 * 113.02169 * 291.85667 * 8 7 6 10 10 C 1.34785 * 119.99950 * 179.97438 * 2 1 3 11 11 O 1.21280 * 119.99873 * 180.02562 * 10 2 1 12 12 C 1.50703 * 119.99692 * 0.02562 * 10 2 1 13 13 C 1.52998 * 109.46543 * 179.97438 * 12 10 2 14 14 C 1.53003 * 109.47083 * 179.97438 * 13 12 10 15 15 C 1.52990 * 109.47293 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47114 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00230 * 359.97438 * 16 15 14 18 18 C 1.37886 * 120.00095 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00157 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99718 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47060 * 90.00419 * 20 18 16 22 22 H 1.48504 * 109.46717 * 210.00076 * 20 18 16 23 23 H 1.48491 * 109.47202 * 329.99850 * 20 18 16 24 24 H 1.08998 * 109.46951 * 90.00204 * 1 2 3 25 25 H 1.08998 * 109.46981 * 210.00005 * 1 2 3 26 26 H 1.08993 * 109.47231 * 329.99976 * 1 2 3 27 27 H 1.09002 * 109.46955 * 329.99983 * 3 2 1 28 28 H 1.08998 * 109.47428 * 209.99880 * 3 2 1 29 29 H 1.08004 * 118.74794 * 0.45617 * 5 4 3 30 30 H 1.08997 * 109.45433 * 223.33711 * 6 5 4 31 31 H 1.09003 * 109.42661 * 103.40157 * 6 5 4 32 32 H 1.09002 * 109.68336 * 167.56430 * 7 6 5 33 33 H 1.08999 * 109.68109 * 288.08078 * 7 6 5 34 34 H 1.09004 * 109.32593 * 289.92600 * 9 8 7 35 35 H 1.08996 * 109.25753 * 170.27764 * 9 8 7 36 36 H 1.08992 * 109.47235 * 299.99711 * 12 10 2 37 37 H 1.08995 * 109.47079 * 60.00372 * 12 10 2 38 38 H 1.09005 * 109.47426 * 299.99751 * 13 12 10 39 39 H 1.09000 * 109.47416 * 60.00168 * 13 12 10 40 40 H 1.08997 * 109.47007 * 300.00433 * 14 13 12 41 41 H 1.09000 * 109.46849 * 59.99831 * 14 13 12 42 42 H 1.09005 * 109.47305 * 299.99817 * 15 14 13 43 43 H 1.09000 * 109.47327 * 60.00104 * 15 14 13 44 44 H 0.96995 * 120.00051 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 6 3.5840 1.3958 1.9737 6 6 3.9238 1.7765 3.3884 7 6 2.9689 2.8730 3.8686 8 8 1.6294 2.4813 3.5428 9 6 1.3757 2.4740 2.1366 10 6 2.1389 -1.1673 0.0005 11 8 3.3517 -1.1673 0.0010 12 6 1.3853 -2.4724 0.0005 13 6 2.3796 -3.6352 0.0005 14 6 1.6146 -4.9603 0.0012 15 6 2.6088 -6.1231 0.0018 16 6 1.8553 -7.4282 0.0018 17 1 0.7753 -7.4283 0.0018 18 6 2.5447 -8.6224 0.0029 19 7 1.8872 -9.7613 0.0034 20 14 4.4127 -8.6223 0.0036 21 1 4.9072 -8.6215 1.4038 22 1 4.9080 -9.8353 -0.6955 23 1 4.9080 -7.4104 -0.6970 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6085 2.0284 -0.5139 28 1 3.1500 1.1384 -0.5138 29 1 4.3113 0.8458 1.3949 30 1 4.9489 2.1446 3.4290 31 1 3.8262 0.9025 4.0324 32 1 3.0634 2.9955 4.9476 33 1 3.2082 3.8123 3.3702 34 1 1.3598 3.4995 1.7675 35 1 0.4089 2.0071 1.9482 36 1 0.7584 -2.5299 0.8902 37 1 0.7591 -2.5303 -0.8897 38 1 3.0063 -3.5775 -0.8895 39 1 3.0063 -3.5775 0.8905 40 1 0.9882 -5.0177 0.8913 41 1 0.9877 -5.0183 -0.8886 42 1 3.2355 -6.0659 -0.8882 43 1 3.2354 -6.0650 0.8918 44 1 2.3721 -10.6013 0.0045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598196893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = -85.087580 kcal Electronic energy + Delta-G solvation = -21896.447393 eV Core-core repulsion = 18620.516420 eV Total energy + Delta-G solvation = -3275.930973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33036 -39.34730 -36.15402 -35.00084 -34.12398 -32.59143 -31.89482 -30.12077 -27.89423 -26.67996 -25.67105 -25.17575 -23.26798 -21.76240 -20.01583 -19.13071 -18.45628 -17.05571 -16.81738 -16.61803 -16.44154 -16.25982 -15.84657 -15.00375 -14.47008 -14.17647 -14.16431 -13.62121 -13.41447 -13.28139 -13.13170 -12.77134 -12.62215 -12.58718 -12.39366 -12.20377 -11.97819 -11.71878 -11.50584 -11.09465 -10.98594 -10.70582 -10.51216 -10.01891 -9.93149 -9.81070 -9.63032 -9.47378 -9.15424 -9.09060 -8.81289 -8.47942 -5.99180 -3.96485 1.72119 2.66683 3.02201 3.36408 3.43230 3.49488 3.52632 4.34728 4.36676 4.51414 4.62381 4.65000 4.80073 4.82342 4.96276 4.99653 5.07947 5.12739 5.17607 5.25837 5.30727 5.33551 5.36282 5.46350 5.50222 5.62327 5.65034 5.80879 6.05474 6.15460 6.23885 6.28867 6.44604 6.52246 6.70601 6.77305 6.83959 7.01096 7.23620 7.40109 7.52911 7.86379 8.17306 8.59983 9.05957 9.64297 11.14385 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.002937 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.534088 B = 9530.822761 C = 9980.784751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.620 5.620 3 C 0.155 3.845 4 C -0.198 4.198 5 C -0.114 4.114 6 C -0.130 4.130 7 C 0.058 3.942 8 O -0.378 6.378 9 C 0.101 3.899 10 C 0.515 3.485 11 O -0.535 6.535 12 C -0.137 4.137 13 C -0.106 4.106 14 C -0.102 4.102 15 C -0.015 4.015 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 29.811 3.126 30.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.355 5.355 3 C 0.032 3.968 4 C -0.199 4.199 5 C -0.133 4.133 6 C -0.167 4.167 7 C -0.019 4.019 8 O -0.296 6.296 9 C 0.025 3.975 10 C 0.305 3.695 11 O -0.411 6.411 12 C -0.177 4.177 13 C -0.144 4.144 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.138 0.862 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.065 29.559 3.240 29.755 hybrid contribution 1.054 -0.125 -0.192 1.078 sum -0.011 29.434 3.048 29.591 Atomic orbital electron populations 1.21862 0.79408 1.03419 1.01973 1.47997 1.06960 1.05650 1.74855 1.20311 0.98510 0.85074 0.92882 1.21938 0.96878 1.02854 0.98233 1.22331 0.97335 0.97609 0.96029 1.21175 1.00202 1.00282 0.95028 1.22657 0.82235 0.95931 1.01045 1.88137 1.29626 1.89435 1.22435 1.21343 0.97164 0.98261 0.80727 1.21096 0.88226 0.85452 0.74776 1.90663 1.14195 1.87340 1.48905 1.21801 1.00028 0.91911 1.03955 1.21486 0.97149 0.92942 1.02795 1.21471 0.98641 0.92969 1.00896 1.19573 0.95316 0.94089 0.96281 1.21191 0.95034 0.89022 1.50443 0.91105 1.25044 0.98395 0.95550 0.94627 1.69919 1.35722 0.97396 1.51538 0.86772 0.86362 0.77626 0.78536 1.20319 1.21464 1.18910 0.92329 0.90427 0.91315 0.90209 0.89251 0.86220 0.89805 0.89625 0.88524 0.92813 0.92183 0.88404 0.89054 0.89056 0.91849 0.91899 0.92901 0.92856 0.96644 0.97087 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.24 59.85 0.61 1.14 16 2 N -0.62 -6.42 2.86 -182.95 -0.52 -6.94 16 3 C 0.15 1.43 5.46 -5.19 -0.03 1.40 16 4 C -0.20 -1.89 5.51 -101.01 -0.56 -2.45 16 5 C -0.11 -1.21 9.53 -35.89 -0.34 -1.55 16 6 C -0.13 -1.13 6.36 -27.97 -0.18 -1.31 16 7 C 0.06 0.46 6.89 37.22 0.26 0.71 16 8 O -0.38 -3.89 10.85 -35.23 -0.38 -4.27 16 9 C 0.10 0.84 6.76 35.78 0.24 1.09 16 10 C 0.51 7.14 7.67 -10.98 -0.08 7.05 16 11 O -0.54 -9.30 15.18 5.56 0.08 -9.21 16 12 C -0.14 -1.81 4.25 -27.88 -0.12 -1.93 16 13 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 14 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 15 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 16 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.91 -28.61 13.96 55.43 0.77 -27.83 16 20 Si 0.88 22.55 27.47 -169.99 -4.67 17.89 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.53 6.44 -51.93 -0.33 0.19 16 26 H 0.07 0.35 6.47 -51.93 -0.34 0.02 16 27 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 28 H 0.09 0.97 7.14 -51.93 -0.37 0.59 16 29 H 0.12 1.46 7.45 -52.48 -0.39 1.07 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.36 8.10 -51.93 -0.42 -0.06 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.72 6.54 -51.93 -0.34 0.38 16 36 H 0.09 1.08 7.40 -51.93 -0.38 0.69 16 37 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 38 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 39 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 43 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -34.97 352.54 -7.97 -42.94 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -7.57 Total: -3.68 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.00 Total: -14.20 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.25 Total: -34.77 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.30 Total: -13.48 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.97 -7.97 -42.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598196893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.152 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds