Wall clock time and date at job start Tue Mar 31 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47159 * 2 1 4 4 C 1.42902 * 113.99934 * 184.97497 * 3 2 1 5 5 H 1.08995 * 109.47165 * 335.85885 * 4 3 2 6 6 C 1.50700 * 109.46744 * 215.86000 * 4 3 2 7 7 O 1.21275 * 120.00484 * 348.20227 * 6 4 3 8 8 N 1.34781 * 119.99549 * 168.20453 * 6 4 3 9 9 C 1.46499 * 120.00134 * 354.84148 * 8 6 4 10 10 C 1.50694 * 109.47465 * 90.00211 * 9 8 6 11 11 H 1.08002 * 119.99685 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00508 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99529 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00248 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47242 * 90.00138 * 14 12 10 16 16 H 1.48500 * 109.47148 * 209.99652 * 14 12 10 17 17 H 1.48493 * 109.47520 * 330.00148 * 14 12 10 18 18 C 1.46505 * 119.99754 * 174.84062 * 8 6 4 19 19 C 1.53006 * 109.47066 * 94.54989 * 18 8 6 20 20 C 1.52998 * 117.49781 * 244.24325 * 19 18 8 21 21 C 1.52996 * 117.49829 * 175.62210 * 19 18 8 22 22 C 1.52998 * 109.47012 * 95.86436 * 4 3 2 23 23 C 1.53003 * 117.51781 * 352.99891 * 22 4 3 24 24 C 1.52992 * 117.50326 * 61.62688 * 22 4 3 25 25 H 1.09003 * 109.47358 * 299.99443 * 1 2 3 26 26 H 1.08995 * 109.47454 * 60.00326 * 1 2 3 27 27 H 1.09005 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47412 * 240.00004 * 2 1 3 29 29 H 1.09004 * 109.47368 * 119.99971 * 2 1 3 30 30 H 1.09001 * 109.46896 * 210.00080 * 9 8 6 31 31 H 1.09001 * 109.47131 * 329.99969 * 9 8 6 32 32 H 0.97002 * 119.99828 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47082 * 214.54634 * 18 8 6 34 34 H 1.08994 * 109.47122 * 334.54780 * 18 8 6 35 35 H 1.08995 * 115.55040 * 29.95031 * 19 18 8 36 36 H 1.09006 * 117.49496 * 359.97438 * 20 19 18 37 37 H 1.08992 * 117.50090 * 145.01960 * 20 19 18 38 38 H 1.08997 * 117.49893 * 214.97727 * 21 19 18 39 39 H 1.08999 * 117.49631 * 359.97438 * 21 19 18 40 40 H 1.09002 * 115.54448 * 207.30379 * 22 4 3 41 41 H 1.08999 * 117.49845 * 214.97488 * 23 22 4 42 42 H 1.09002 * 117.49511 * 359.97438 * 23 22 4 43 43 H 1.09008 * 117.49648 * 359.97438 * 24 22 4 44 44 H 1.09005 * 117.50080 * 144.97511 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4617 -0.1132 5 1 3.8942 0.5444 0.2436 6 6 3.9041 2.6252 0.7168 7 8 3.1042 3.4171 1.1685 8 7 5.2205 2.7858 0.9572 9 6 6.1763 1.7702 0.5087 10 6 6.6471 2.1033 -0.8835 11 1 6.2715 2.9834 -1.3843 12 6 7.5564 1.2842 -1.5183 13 7 8.0133 0.2122 -0.9086 14 14 8.1394 1.6968 -3.2443 15 1 9.3460 2.5591 -3.1664 16 1 8.4729 0.4432 -3.9671 17 1 7.0631 2.4163 -3.9716 18 6 5.6956 3.9761 1.6670 19 6 5.8239 3.6629 3.1591 20 6 4.9127 4.4265 4.1222 21 6 6.4064 4.7519 4.0621 22 6 3.8042 1.6909 -1.5780 23 6 2.6884 1.5903 -2.6200 24 6 3.2733 2.9560 -2.2550 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 7.0301 1.7506 1.1860 31 1 5.6931 0.7931 0.5048 32 1 8.6533 -0.3640 -1.3550 33 1 6.6683 4.2703 1.2726 34 1 4.9851 4.7907 1.5265 35 1 6.0597 2.6271 3.4035 36 1 4.2221 5.1523 3.6927 37 1 4.5487 3.8931 5.0003 38 1 7.0252 4.4327 4.9007 39 1 6.6986 5.6915 3.5931 40 1 4.7960 1.3435 -1.8673 41 1 2.9462 1.1767 -3.5950 42 1 1.6848 1.3603 -2.2621 43 1 2.6544 3.6250 -1.6569 44 1 3.9161 3.4413 -2.9896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599325339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:33 Heat of formation + Delta-G solvation = -33.843932 kcal Electronic energy + Delta-G solvation = -23625.393917 eV Core-core repulsion = 20351.685036 eV Total energy + Delta-G solvation = -3273.708882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.70346 -37.87645 -36.61747 -35.54653 -34.61824 -32.51519 -31.14692 -28.57110 -27.30220 -25.46293 -23.01138 -22.67953 -22.05657 -21.74668 -20.86146 -19.99658 -18.42121 -16.72347 -16.41446 -16.28471 -15.93648 -15.54047 -14.71719 -14.46615 -14.36822 -14.15886 -13.75814 -13.31911 -12.92854 -12.40132 -12.33980 -12.15061 -11.97889 -11.86107 -11.52898 -11.29828 -11.23264 -10.98839 -10.95114 -10.88964 -10.76777 -10.67613 -10.32953 -10.10810 -9.87637 -9.75238 -9.70701 -9.54950 -9.21470 -8.70901 -8.48117 -7.71126 -6.23000 -4.27587 3.18600 3.26865 3.28559 3.41686 3.52123 4.12005 4.26583 4.30949 4.58277 5.08572 5.10691 5.18734 5.25308 5.28483 5.32443 5.36519 5.46563 5.52467 5.62515 5.72723 5.81534 5.86769 5.88278 5.96806 6.04858 6.15422 6.16257 6.17400 6.21436 6.25223 6.27508 6.39312 6.46128 6.60848 6.74050 6.77329 7.04464 7.13159 7.46136 7.63827 7.73819 8.01907 8.34327 8.77623 9.06626 9.37041 10.83351 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009623 B = 0.008942 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.958891 B = 3130.559224 C = 5255.868445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.111 3.889 5 H 0.087 0.913 6 C 0.524 3.476 7 O -0.554 6.554 8 N -0.590 5.590 9 C 0.235 3.765 10 C -0.530 4.530 11 H 0.066 0.934 12 C 0.065 3.935 13 N -0.889 5.889 14 Si 0.890 3.110 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.153 3.847 19 C -0.159 4.159 20 C -0.175 4.175 21 C -0.181 4.181 22 C -0.160 4.160 23 C -0.181 4.181 24 C -0.169 4.169 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.152 0.848 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.874 0.772 2.637 7.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 O -0.280 6.280 4 C 0.050 3.950 5 H 0.105 0.895 6 C 0.312 3.688 7 O -0.433 6.433 8 N -0.322 5.322 9 C 0.115 3.885 10 C -0.568 4.568 11 H 0.084 0.916 12 C -0.138 4.138 13 N -0.528 5.528 14 Si 0.717 3.283 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.196 1.196 18 C 0.029 3.971 19 C -0.179 4.179 20 C -0.212 4.212 21 C -0.218 4.218 22 C -0.178 4.178 23 C -0.218 4.218 24 C -0.206 4.206 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.169 0.831 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.287 1.172 2.857 7.915 hybrid contribution 0.822 -0.231 -0.979 1.300 sum -6.465 0.941 1.878 6.797 Atomic orbital electron populations 1.21708 0.94077 1.01701 1.02978 1.22531 0.95228 0.84457 1.00141 1.87952 1.20245 1.25523 1.94291 1.21318 0.81585 0.97862 0.94195 0.89546 1.20120 0.82476 0.86462 0.79786 1.90590 1.54333 1.45863 1.52490 1.48051 1.06368 1.22845 1.54937 1.19465 0.87761 0.85907 0.95330 1.21501 1.25033 1.10362 0.99927 0.91570 1.24925 0.95867 0.94902 0.98138 1.69919 1.31011 1.13990 1.37846 0.86612 0.79433 0.77966 0.84261 1.20494 1.21099 1.19589 1.20825 1.00040 0.88151 0.88070 1.22782 1.04115 0.97380 0.93578 1.22949 0.92838 1.03770 1.01645 1.22898 0.96402 1.00160 1.02376 1.23129 1.00662 1.03163 0.90868 1.22900 0.98602 1.01276 0.98995 1.22754 1.03439 0.90939 1.03461 0.91987 0.92027 0.91459 0.93032 0.93691 0.94415 0.94774 0.92499 0.90095 0.90811 0.87882 0.88769 0.89568 0.89209 0.88964 0.83113 0.89621 0.88727 0.89146 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 37.15 0.38 -1.38 16 2 C 0.05 0.78 5.72 37.15 0.21 0.99 16 3 O -0.36 -6.77 8.18 -54.86 -0.45 -7.22 16 4 C 0.11 2.19 2.22 -27.88 -0.06 2.13 16 5 H 0.09 1.68 6.22 -51.93 -0.32 1.36 16 6 C 0.52 11.36 6.57 -10.98 -0.07 11.29 16 7 O -0.55 -13.18 16.10 -14.07 -0.23 -13.41 16 8 N -0.59 -12.36 2.46 -175.06 -0.43 -12.79 16 9 C 0.24 5.35 4.86 -5.20 -0.03 5.33 16 10 C -0.53 -12.84 6.16 -34.44 -0.21 -13.05 16 11 H 0.07 1.64 7.71 -52.49 -0.40 1.24 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -23.40 13.29 55.43 0.74 -22.66 16 14 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 18 C 0.15 2.86 5.70 -4.04 -0.02 2.83 16 19 C -0.16 -2.64 6.01 -90.62 -0.54 -3.19 16 20 C -0.18 -2.61 10.18 -26.73 -0.27 -2.88 16 21 C -0.18 -2.46 10.25 -26.73 -0.27 -2.73 16 22 C -0.16 -3.10 4.65 -90.62 -0.42 -3.52 16 23 C -0.18 -3.03 9.55 -26.73 -0.26 -3.29 16 24 C -0.17 -3.14 9.79 -26.74 -0.26 -3.40 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.71 7.82 -51.93 -0.41 0.31 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.03 0.81 6.18 -51.93 -0.32 0.48 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 34 H 0.07 1.41 7.10 -51.93 -0.37 1.04 16 35 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.15 3.26 5.65 -51.93 -0.29 2.97 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.53 6.47 -51.93 -0.34 1.19 16 43 H 0.09 1.79 8.12 -51.92 -0.42 1.37 16 44 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -27.64 357.51 -9.42 -37.06 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.49 Total: 8.27 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.93 Total: -9.35 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.31 Total: -35.45 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.68 Total: -20.62 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.64 -9.42 -37.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599325339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.219 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds