Wall clock time and date at job start Tue Mar 31 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47051 * 2 1 4 4 C 1.42901 * 114.00119 * 183.51322 * 3 2 1 5 5 H 1.09002 * 109.46993 * 24.10156 * 4 3 2 6 6 C 1.50698 * 109.47429 * 144.11037 * 4 3 2 7 7 O 1.21290 * 119.99879 * 7.64525 * 6 4 3 8 8 N 1.34781 * 119.99835 * 187.92430 * 6 4 3 9 9 C 1.37098 * 119.99540 * 184.61012 * 8 6 4 10 10 H 1.07997 * 119.99567 * 222.81371 * 9 8 6 11 11 C 1.38947 * 120.00081 * 42.82121 * 9 8 6 12 12 N 1.31405 * 120.00408 * 16.37611 * 11 9 8 13 13 Si 1.86799 * 119.99686 * 196.37765 * 11 9 8 14 14 H 1.48495 * 109.47520 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47281 * 119.99969 * 13 11 9 16 16 H 1.48501 * 109.47482 * 239.99764 * 13 11 9 17 17 C 1.46497 * 119.99910 * 4.60448 * 8 6 4 18 18 C 1.54270 * 110.03380 * 239.50517 * 17 8 6 19 19 C 1.54962 * 104.16044 * 217.13862 * 18 17 8 20 20 C 1.54893 * 102.77556 * 37.89145 * 19 18 17 21 21 C 1.53881 * 110.02724 * 122.29276 * 17 8 6 22 22 C 1.53003 * 109.46905 * 264.11249 * 4 3 2 23 23 C 1.53001 * 117.50105 * 8.51692 * 22 4 3 24 24 C 1.53009 * 117.49536 * 299.86229 * 22 4 3 25 25 H 1.08995 * 109.47086 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46382 * 299.99972 * 1 2 3 27 27 H 1.08998 * 109.47094 * 59.99289 * 1 2 3 28 28 H 1.08999 * 109.46853 * 240.00484 * 2 1 3 29 29 H 1.08998 * 109.47431 * 120.00008 * 2 1 3 30 30 H 0.97000 * 120.00819 * 184.91759 * 12 11 9 31 31 H 1.08994 * 110.02143 * 0.90537 * 17 8 6 32 32 H 1.09004 * 110.48234 * 335.78918 * 18 17 8 33 33 H 1.08997 * 110.48303 * 98.42680 * 18 17 8 34 34 H 1.08989 * 110.72382 * 279.57661 * 19 18 17 35 35 H 1.09000 * 110.91991 * 156.29215 * 19 18 17 36 36 H 1.09004 * 110.48467 * 203.40062 * 20 19 18 37 37 H 1.08999 * 110.60038 * 80.81751 * 20 19 18 38 38 H 1.09003 * 110.03184 * 238.56835 * 21 17 8 39 39 H 1.08999 * 110.03225 * 359.95087 * 21 17 8 40 40 H 1.08998 * 115.55264 * 154.19523 * 22 4 3 41 41 H 1.09000 * 117.49475 * 0.02562 * 23 22 4 42 42 H 1.09003 * 117.49841 * 145.02217 * 23 22 4 43 43 H 1.08997 * 117.49653 * 214.98265 * 24 22 4 44 44 H 1.08995 * 117.50049 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4286 1.4610 -0.0800 5 1 3.8394 0.5635 -0.5426 6 6 3.7904 2.6651 -0.9108 7 8 2.9255 3.4353 -1.2711 8 7 5.0743 2.8831 -1.2580 9 6 5.4173 4.0265 -1.9323 10 1 6.1087 3.9780 -2.7606 11 6 4.8756 5.2475 -1.5500 12 7 4.3033 5.3731 -0.3738 13 14 4.9607 6.7106 -2.7082 14 1 5.6498 6.3107 -3.9613 15 1 3.5851 7.1713 -3.0258 16 1 5.7142 7.8131 -2.0586 17 6 6.1032 1.8984 -0.9148 18 6 7.1803 2.5488 -0.0220 19 6 8.5064 1.9020 -0.4957 20 6 8.3064 1.7932 -2.0278 21 6 6.8189 1.4179 -2.1895 22 6 4.0074 1.6197 1.3274 23 6 3.0543 1.4293 2.5090 24 6 3.5531 2.8301 2.1457 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8625 6.2035 -0.1349 31 1 5.6517 1.0515 -0.3983 32 1 7.2048 3.6273 -0.1782 33 1 6.9960 2.3184 1.0272 34 1 8.6342 0.9148 -0.0518 35 1 9.3570 2.5422 -0.2618 36 1 8.9441 1.0119 -2.4413 37 1 8.5134 2.7484 -2.5104 38 1 6.7153 0.3375 -2.2911 39 1 6.4000 1.9167 -3.0634 40 1 5.0373 1.2855 1.4526 41 1 2.0149 1.1905 2.2836 42 1 3.4572 0.9700 3.4117 43 1 4.2840 3.2919 2.8095 44 1 2.8422 3.5135 1.6813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599537984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:35 Heat of formation + Delta-G solvation = -48.544641 kcal Electronic energy + Delta-G solvation = -24316.153341 eV Core-core repulsion = 21041.806989 eV Total energy + Delta-G solvation = -3274.346352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.42903 -37.82576 -36.26127 -35.42045 -33.16855 -31.55563 -30.89065 -28.08023 -27.54130 -26.76888 -24.15594 -22.63246 -21.63386 -20.71682 -20.05863 -19.56538 -19.21025 -16.46125 -16.24645 -15.90122 -15.80405 -14.89891 -14.64015 -14.40100 -14.00352 -13.76186 -13.43648 -12.92641 -12.79206 -12.45697 -12.24229 -11.92526 -11.78295 -11.36456 -11.22293 -10.99105 -10.80533 -10.73597 -10.69435 -10.62475 -10.54807 -10.44411 -10.38353 -10.15991 -10.00616 -9.85029 -9.68282 -9.62155 -9.13114 -8.62544 -7.76764 -6.97795 -5.97994 -3.74769 3.36030 3.45595 3.47334 3.95950 4.19770 4.47516 4.52383 5.10137 5.18683 5.21893 5.25195 5.31037 5.40694 5.44592 5.51362 5.58478 5.63871 5.64396 5.80653 5.87795 5.94581 5.99280 6.10646 6.12856 6.14038 6.16537 6.21893 6.28250 6.32176 6.33516 6.46136 6.48811 6.54888 6.63869 6.71024 6.82893 6.98043 7.04393 7.22855 7.67853 7.76161 8.39487 9.17838 9.32908 9.77659 10.43309 11.08246 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.008014 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.995192 B = 3492.875111 C = 4470.329125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.351 6.351 4 C 0.106 3.894 5 H 0.064 0.936 6 C 0.490 3.510 7 O -0.519 6.519 8 N -0.447 5.447 9 C -0.333 4.333 10 H 0.077 0.923 11 C 0.070 3.930 12 N -0.826 5.826 13 Si 0.901 3.099 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.288 1.288 17 C 0.129 3.871 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.170 4.170 23 C -0.187 4.187 24 C -0.135 4.135 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.261 0.739 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.457 -11.059 3.296 11.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 O -0.269 6.269 4 C 0.044 3.956 5 H 0.082 0.918 6 C 0.276 3.724 7 O -0.394 6.394 8 N -0.170 5.170 9 C -0.460 4.460 10 H 0.094 0.906 11 C -0.140 4.140 12 N -0.460 5.460 13 Si 0.729 3.271 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.214 1.214 17 C 0.023 3.977 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.171 4.171 22 C -0.189 4.189 23 C -0.224 4.224 24 C -0.172 4.172 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.799 -10.339 3.260 10.989 hybrid contribution 0.313 0.420 -0.395 0.656 sum 2.112 -9.919 2.865 10.539 Atomic orbital electron populations 1.21701 0.94178 1.01434 1.03213 1.22515 0.95371 0.85098 0.99449 1.88046 1.20056 1.24502 1.94277 1.21563 0.81446 0.98701 0.93904 0.91835 1.19489 0.83452 0.86146 0.83357 1.90519 1.47570 1.46723 1.54632 1.43241 1.02813 1.18198 1.52782 1.18822 1.31309 0.83244 1.12628 0.90550 1.25144 0.96628 0.97820 0.94448 1.69863 1.32032 1.26373 1.17740 0.86328 0.77758 0.82102 0.80929 1.19794 1.20912 1.21449 1.21731 0.90363 0.91804 0.93774 1.22658 0.92993 1.02826 0.97666 1.22459 0.98088 0.99685 0.95914 1.22250 0.96101 1.00852 0.96213 1.22484 0.95380 0.99236 1.00048 1.22636 0.98443 1.06177 0.91602 1.22964 0.99774 1.02087 0.97566 1.22694 1.02885 0.90264 1.01327 0.91693 0.92040 0.91808 0.93982 0.93710 0.92911 0.91751 0.89063 0.93080 0.92613 0.92368 0.92975 0.91568 0.93060 0.90573 0.87749 0.88581 0.89994 0.89799 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 37.16 0.38 -1.55 16 2 C 0.05 0.80 5.85 37.16 0.22 1.02 16 3 O -0.35 -7.20 8.20 -55.02 -0.45 -7.65 16 4 C 0.11 2.17 2.12 -27.88 -0.06 2.11 16 5 H 0.06 1.17 6.66 -51.93 -0.35 0.82 16 6 C 0.49 12.52 5.84 -10.98 -0.06 12.45 16 7 O -0.52 -15.76 14.36 -14.24 -0.20 -15.97 16 8 N -0.45 -10.81 2.46 -106.54 -0.26 -11.07 16 9 C -0.33 -8.87 7.44 -14.93 -0.11 -8.98 16 10 H 0.08 1.99 7.07 -52.49 -0.37 1.62 16 11 C 0.07 1.93 4.45 -17.47 -0.08 1.85 16 12 N -0.83 -23.85 11.62 55.50 0.65 -23.21 16 13 Si 0.90 21.96 29.59 -169.99 -5.03 16.94 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 C 0.13 2.48 2.56 -66.81 -0.17 2.31 16 18 C -0.12 -2.25 6.40 -25.03 -0.16 -2.41 16 19 C -0.12 -1.82 6.91 -24.70 -0.17 -1.99 16 20 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 21 C -0.13 -2.28 6.19 -25.61 -0.16 -2.44 16 22 C -0.17 -3.14 5.01 -90.61 -0.45 -3.60 16 23 C -0.19 -3.06 9.50 -26.69 -0.25 -3.31 16 24 C -0.13 -2.67 9.81 -26.69 -0.26 -2.94 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.60 8.02 -51.93 -0.42 0.19 16 29 H 0.04 0.61 7.46 -51.93 -0.39 0.22 16 30 H 0.26 7.39 8.32 -40.82 -0.34 7.05 16 31 H 0.06 1.15 4.56 -51.93 -0.24 0.91 16 32 H 0.09 2.00 7.10 -51.93 -0.37 1.63 16 33 H 0.05 0.89 7.60 -51.93 -0.39 0.49 16 34 H 0.06 0.73 8.14 -51.94 -0.42 0.30 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.47 6.86 -51.93 -0.36 1.11 16 40 H 0.10 1.79 6.40 -51.93 -0.33 1.46 16 41 H 0.10 1.60 6.26 -51.93 -0.32 1.27 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 44 H 0.11 2.52 8.14 -51.93 -0.42 2.09 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -31.79 342.60 -8.97 -40.76 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.32 Total: 4.45 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.51 Total: -9.40 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.38 Total: -34.28 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.66 Total: -23.62 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.79 -8.97 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599537984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.787 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds