Wall clock time and date at job start Tue Mar 31 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47315 * 2 1 4 4 C 1.42903 * 114.00182 * 184.05474 * 3 2 1 5 5 H 1.08993 * 109.46710 * 342.33870 * 4 3 2 6 6 C 1.50691 * 109.46924 * 222.33653 * 4 3 2 7 7 O 1.21295 * 120.00442 * 349.16405 * 6 4 3 8 8 N 1.34779 * 119.99765 * 169.15478 * 6 4 3 9 9 C 1.37106 * 119.99833 * 176.44261 * 8 6 4 10 10 H 1.07993 * 119.99723 * 218.66199 * 9 8 6 11 11 C 1.38951 * 119.99773 * 38.66369 * 9 8 6 12 12 N 1.31404 * 120.00515 * 19.97371 * 11 9 8 13 13 Si 1.86804 * 119.99582 * 199.97815 * 11 9 8 14 14 H 1.48496 * 109.47492 * 59.99311 * 13 11 9 15 15 H 1.48493 * 109.47063 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46954 * 299.99907 * 13 11 9 17 17 C 1.46498 * 120.00261 * 356.17369 * 8 6 4 18 18 C 1.54270 * 110.02987 * 237.90689 * 17 8 6 19 19 C 1.54959 * 104.15651 * 217.13154 * 18 17 8 20 20 C 1.54890 * 102.78064 * 37.88926 * 19 18 17 21 21 C 1.53873 * 110.03488 * 120.68610 * 17 8 6 22 22 C 1.53000 * 109.46892 * 102.33791 * 4 3 2 23 23 C 1.52998 * 117.50056 * 8.56980 * 22 4 3 24 24 C 1.53001 * 117.50072 * 299.90646 * 22 4 3 25 25 H 1.09000 * 109.47100 * 299.99989 * 1 2 3 26 26 H 1.08994 * 109.47163 * 60.00419 * 1 2 3 27 27 H 1.09003 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99633 * 2 1 3 29 29 H 1.09003 * 109.47378 * 119.99645 * 2 1 3 30 30 H 0.96996 * 120.00363 * 184.92720 * 12 11 9 31 31 H 1.09004 * 110.01223 * 359.28999 * 17 8 6 32 32 H 1.08997 * 110.48483 * 335.77716 * 18 17 8 33 33 H 1.08995 * 110.48627 * 98.42332 * 18 17 8 34 34 H 1.09000 * 110.72263 * 279.57153 * 19 18 17 35 35 H 1.09001 * 110.92551 * 156.29489 * 19 18 17 36 36 H 1.09002 * 110.48824 * 203.40350 * 20 19 18 37 37 H 1.08999 * 110.60356 * 80.81216 * 20 19 18 38 38 H 1.08999 * 110.02978 * 238.56943 * 21 17 8 39 39 H 1.08994 * 110.02893 * 359.97438 * 21 17 8 40 40 H 1.08998 * 115.54747 * 154.23644 * 22 4 3 41 41 H 1.09000 * 117.49713 * 359.97438 * 23 22 4 42 42 H 1.08998 * 117.49806 * 145.02271 * 23 22 4 43 43 H 1.08994 * 117.50067 * 214.98404 * 24 22 4 44 44 H 1.09006 * 117.49808 * 0.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4278 1.4612 -0.0923 5 1 3.8863 0.5070 0.1671 6 6 3.9093 2.5253 0.8599 7 8 3.1111 3.2599 1.4026 8 7 5.2270 2.6606 1.1088 9 6 5.6712 3.6746 1.9177 10 1 6.5861 4.1956 1.6774 11 6 4.9442 4.0317 3.0467 12 7 4.0789 3.1894 3.5647 13 14 5.1970 5.7096 3.8281 14 1 4.8705 6.7697 2.8409 15 1 4.3093 5.8435 5.0109 16 1 6.6128 5.8490 4.2540 17 6 6.1841 1.7209 0.5197 18 6 6.9975 1.0280 1.6325 19 6 8.4210 0.8956 1.0349 20 6 8.5885 2.2213 0.2516 21 6 7.1951 2.4790 -0.3582 22 6 3.8171 1.8423 -1.5221 23 6 2.6892 2.2187 -2.4848 24 6 3.4167 0.8812 -2.6432 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.5203 3.4640 4.3086 31 1 5.6568 0.9759 -0.0763 32 1 7.0169 1.6447 2.5310 33 1 6.5822 0.0445 1.8525 34 1 8.4790 0.0397 0.3625 35 1 9.1687 0.8162 1.8241 36 1 9.3343 2.1080 -0.5352 37 1 8.8660 3.0323 0.9250 38 1 7.1591 2.1015 -1.3801 39 1 6.9734 3.5461 -0.3463 40 1 4.7650 2.3702 -1.6263 41 1 1.6698 2.1945 -2.0998 42 1 2.8952 2.9940 -3.2228 43 1 4.1010 0.7772 -3.4852 44 1 2.8755 -0.0224 -2.3623 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599537985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:37 Heat of formation + Delta-G solvation = -62.919006 kcal Electronic energy + Delta-G solvation = -24156.565988 eV Core-core repulsion = 20881.596316 eV Total energy + Delta-G solvation = -3274.969672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09470 -39.39441 -38.04854 -36.83316 -35.05071 -33.54048 -32.21676 -29.43907 -29.27891 -28.30840 -26.05925 -23.98301 -22.95115 -22.26382 -21.54714 -21.19593 -20.89187 -18.52110 -17.67660 -17.57204 -17.34334 -16.47394 -16.21503 -15.71529 -15.61998 -15.52924 -15.09513 -14.65092 -14.20228 -14.01662 -13.63997 -13.46918 -13.31333 -12.95400 -12.84109 -12.74865 -12.53263 -12.43309 -12.27906 -12.15313 -12.06836 -12.06210 -11.81738 -11.77714 -11.37450 -11.34156 -11.27462 -11.03916 -10.74678 -10.53376 -9.68711 -8.97466 -8.08638 -5.86857 1.36358 1.44374 1.47670 2.30736 2.41081 2.58170 3.05294 3.28793 3.36353 3.75015 3.86652 3.88271 3.98276 4.04741 4.15691 4.21119 4.29801 4.32548 4.39795 4.42718 4.61795 4.70600 4.72390 4.80114 4.83714 4.85676 4.86776 4.96876 4.99674 5.05933 5.12996 5.19866 5.23298 5.28052 5.31823 5.36946 5.44801 5.56084 5.61061 5.68508 6.20537 6.34677 7.09481 7.34350 7.78591 8.47402 8.95076 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.007980 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.596436 B = 3507.753409 C = 4733.296433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 O -0.382 6.382 4 C 0.121 3.879 5 H 0.076 0.924 6 C 0.448 3.552 7 O -0.570 6.570 8 N -0.454 5.454 9 C -0.339 4.339 10 H 0.083 0.917 11 C 0.014 3.986 12 N -0.857 5.857 13 Si 0.956 3.044 14 H -0.284 1.284 15 H -0.294 1.294 16 H -0.256 1.256 17 C 0.121 3.879 18 C -0.130 4.130 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.186 4.186 23 C -0.170 4.170 24 C -0.145 4.145 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -9.848 -12.352 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 O -0.301 6.301 4 C 0.060 3.940 5 H 0.094 0.906 6 C 0.235 3.765 7 O -0.449 6.449 8 N -0.177 5.177 9 C -0.466 4.466 10 H 0.101 0.899 11 C -0.192 4.192 12 N -0.493 5.493 13 Si 0.782 3.218 14 H -0.210 1.210 15 H -0.220 1.220 16 H -0.181 1.181 17 C 0.017 3.983 18 C -0.168 4.168 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.165 4.165 22 C -0.205 4.205 23 C -0.207 4.207 24 C -0.181 4.181 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.398 -9.376 -11.877 15.509 hybrid contribution -0.234 0.948 1.213 1.557 sum 3.165 -8.428 -10.665 13.957 Atomic orbital electron populations 1.21720 0.92460 1.03505 1.02303 1.22878 0.96891 0.83180 1.00341 1.88008 1.19973 1.27578 1.94530 1.21221 0.82164 0.97078 0.93549 0.90629 1.20649 0.83500 0.87670 0.84644 1.90494 1.54903 1.47734 1.51787 1.43583 1.03975 1.26765 1.43341 1.19069 1.11300 1.12705 1.03569 0.89920 1.25872 0.97101 1.00436 0.95841 1.70050 1.22348 1.34859 1.22039 0.85588 0.78280 0.80798 0.77150 1.21004 1.22014 1.18078 1.22070 0.90862 0.91062 0.94328 1.22634 0.96515 0.98975 0.98680 1.22410 0.94773 0.98047 0.99437 1.22260 0.96178 0.97271 0.99432 1.22440 0.95016 1.00029 0.99006 1.22628 1.00872 1.07495 0.89521 1.22881 0.97154 0.99622 1.01017 1.23142 1.02826 0.93281 0.98857 0.93945 0.91565 0.88187 0.90871 0.94656 0.93938 0.89668 0.93398 0.92685 0.89473 0.91291 0.89416 0.93332 0.89642 0.93333 0.87171 0.89469 0.88052 0.85982 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 10.28 71.98 0.74 -2.95 16 2 C 0.04 1.33 6.31 71.98 0.45 1.78 16 3 O -0.38 -16.02 7.90 -130.17 -1.03 -17.05 16 4 C 0.12 4.99 2.10 29.85 0.06 5.05 16 5 H 0.08 2.86 6.53 -2.39 -0.02 2.85 16 6 C 0.45 24.13 6.38 87.65 0.56 24.69 16 7 O -0.57 -37.24 13.60 15.73 0.21 -37.03 16 8 N -0.45 -22.83 2.48 -609.38 -1.51 -24.35 16 9 C -0.34 -18.88 7.49 84.04 0.63 -18.25 16 10 H 0.08 4.41 7.22 -2.91 -0.02 4.39 16 11 C 0.01 0.81 4.35 84.93 0.37 1.18 16 12 N -0.86 -54.56 11.19 21.66 0.24 -54.32 16 13 Si 0.96 47.47 29.60 68.60 2.03 49.50 16 14 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 15 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 17 C 0.12 4.56 2.39 45.72 0.11 4.67 16 18 C -0.13 -4.72 6.42 31.69 0.20 -4.52 16 19 C -0.11 -2.87 6.91 31.91 0.22 -2.65 16 20 C -0.11 -3.07 6.83 31.67 0.22 -2.86 16 21 C -0.13 -3.99 5.64 31.32 0.18 -3.82 16 22 C -0.19 -6.10 4.75 -10.79 -0.05 -6.15 16 23 C -0.17 -4.97 9.88 30.62 0.30 -4.67 16 24 C -0.14 -3.32 10.10 30.62 0.31 -3.01 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 1.77 6.02 -2.39 -0.01 1.76 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.25 15.80 8.32 -92.71 -0.77 15.03 16 31 H 0.09 2.89 5.05 -2.38 -0.01 2.88 16 32 H 0.05 2.16 7.02 -2.39 -0.02 2.15 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.81 7.02 -2.39 -0.02 1.79 16 40 H 0.11 3.67 6.83 -2.39 -0.02 3.66 16 41 H 0.09 2.86 7.06 -2.39 -0.02 2.85 16 42 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.10 2.10 6.03 -2.38 -0.01 2.09 16 Total: -1.00 -77.72 340.74 5.22 -72.49 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.97 Total: 22.24 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.30 Total: -11.49 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.27 Total: -78.67 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.81 Total: -54.08 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -77.72 5.22 -72.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599537985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.576 kcal (2) G-P(sol) polarization free energy of solvation -77.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds