Wall clock time and date at job start Tue Mar 31 2020 05:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99971 * 2 1 4 4 N 1.46499 * 109.47224 * 234.99757 * 3 2 1 5 5 C 1.46495 * 119.99965 * 95.03131 * 4 3 2 6 6 C 1.50703 * 109.47410 * 89.99730 * 5 4 3 7 7 H 1.08004 * 119.99636 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00121 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99918 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00136 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47309 * 89.99762 * 10 8 6 12 12 H 1.48501 * 109.47350 * 209.99896 * 10 8 6 13 13 H 1.48500 * 109.46869 * 329.99843 * 10 8 6 14 14 C 1.34777 * 119.99960 * 275.03200 * 4 3 2 15 15 O 1.21283 * 119.99942 * 185.12655 * 14 4 3 16 16 C 1.50701 * 119.99815 * 5.11618 * 14 4 3 17 17 H 1.08997 * 110.80742 * 356.12410 * 16 14 4 18 18 C 1.54816 * 110.90224 * 119.75084 * 16 14 4 19 19 H 1.09004 * 110.48381 * 215.99840 * 18 16 14 20 20 C 1.53001 * 110.48611 * 338.50581 * 18 16 14 21 21 C 1.54094 * 104.19112 * 97.31692 * 18 16 14 22 22 H 1.08993 * 109.87928 * 117.39255 * 21 18 16 23 23 C 1.53000 * 109.88053 * 238.54742 * 21 18 16 24 24 O 1.43744 * 107.29233 * 357.96852 * 21 18 16 25 25 C 1.44383 * 106.97690 * 26.51574 * 24 21 18 26 26 H 1.08995 * 110.62016 * 78.43625 * 25 24 21 27 27 C 1.52995 * 110.61829 * 201.43687 * 25 24 21 28 28 H 1.07999 * 120.00124 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00140 * 359.72682 * 1 2 3 30 30 H 1.07996 * 120.00166 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47339 * 355.00194 * 3 2 1 32 32 H 1.09003 * 109.46882 * 114.99407 * 3 2 1 33 33 H 1.08997 * 109.47124 * 210.00014 * 5 4 3 34 34 H 1.09005 * 109.47044 * 330.00201 * 5 4 3 35 35 H 0.96994 * 120.00095 * 180.02562 * 9 8 6 36 36 H 1.08992 * 109.47285 * 63.30939 * 20 18 16 37 37 H 1.09007 * 109.46750 * 183.30995 * 20 18 16 38 38 H 1.08999 * 109.47422 * 303.30844 * 20 18 16 39 39 H 1.08997 * 109.47059 * 59.99381 * 23 21 18 40 40 H 1.08997 * 109.47335 * 179.97438 * 23 21 18 41 41 H 1.09000 * 109.46609 * 299.99678 * 23 21 18 42 42 H 1.08996 * 109.47226 * 167.58094 * 27 25 24 43 43 H 1.09000 * 109.47596 * 287.58714 * 27 25 24 44 44 H 1.09002 * 109.47076 * 47.59000 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 -1.1314 5 6 2.5964 1.9644 -2.3916 6 6 2.9813 3.4212 -2.3658 7 1 3.4732 3.8345 -1.4976 8 6 2.7065 4.2262 -3.4509 9 7 3.0428 5.4974 -3.4286 10 14 1.8565 3.5112 -4.9528 11 1 0.3853 3.6416 -4.7979 12 1 2.2936 4.2471 -6.1663 13 1 2.2147 2.0764 -5.0881 14 6 4.2152 0.7747 -1.0128 15 8 5.0190 0.8777 -1.9152 16 6 4.5823 0.0238 0.2412 17 1 3.7797 0.0821 0.9764 18 6 4.9317 -1.4499 -0.0797 19 1 4.5868 -2.1063 0.7192 20 6 4.3164 -1.8671 -1.4170 21 6 6.4703 -1.4639 -0.1629 22 1 6.8776 -2.1120 0.6130 23 6 6.9123 -1.9574 -1.5420 24 8 6.9215 -0.1144 0.0409 25 6 5.9143 0.5519 0.8323 26 1 6.0052 0.2740 1.8823 27 6 6.0141 2.0694 0.6645 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0045 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1317 -0.0895 32 1 2.6212 1.4026 0.9315 33 1 3.1013 1.4698 -3.2214 34 1 1.5174 1.8759 -2.5181 35 1 2.8492 6.0638 -4.1918 36 1 4.7498 -1.2692 -2.2186 37 1 4.5225 -2.9220 -1.5983 38 1 3.2386 -1.7075 -1.3866 39 1 6.5166 -1.2927 -2.3098 40 1 8.0010 -1.9643 -1.5938 41 1 6.5341 -2.9666 -1.7050 42 1 5.1248 2.5404 1.0833 43 1 6.8987 2.4352 1.1857 44 1 6.0896 2.3136 -0.3951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599962290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:59 Heat of formation + Delta-G solvation = -53.713823 kcal Electronic energy + Delta-G solvation = -24237.838260 eV Core-core repulsion = 20963.267755 eV Total energy + Delta-G solvation = -3274.570505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69293 -38.12625 -35.68373 -33.93849 -33.23868 -32.41987 -32.01284 -28.87337 -28.38149 -26.80597 -25.58956 -24.13404 -22.68845 -21.07292 -20.00380 -19.58915 -18.22855 -17.27816 -16.89683 -16.13129 -15.57718 -15.25562 -14.85261 -14.59360 -14.32211 -13.90924 -13.75499 -13.43230 -12.79730 -12.63073 -12.40447 -12.36917 -12.15258 -11.88270 -11.77343 -11.70601 -11.58927 -11.44492 -11.11688 -11.00555 -10.95333 -10.69075 -10.58394 -10.48284 -10.40698 -10.08055 -9.52899 -9.40573 -9.30433 -8.78594 -8.57733 -7.69898 -6.07147 -4.05284 2.31761 3.26954 3.28732 3.35632 3.39554 3.83695 4.00842 4.40765 4.56515 4.74881 4.91817 5.00385 5.06611 5.18117 5.25150 5.28391 5.38373 5.46069 5.48776 5.53033 5.61820 5.64488 5.75503 5.83145 5.89141 5.91167 5.95755 6.07786 6.15259 6.21414 6.26707 6.32188 6.60143 6.67799 6.68418 6.71548 6.80751 6.98244 7.23593 7.38506 7.63147 8.27550 8.48918 8.95971 9.05748 9.53628 11.06285 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.006606 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.022111 B = 4237.273237 C = 4758.283171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.171 4.171 3 C 0.135 3.865 4 N -0.591 5.591 5 C 0.219 3.781 6 C -0.525 4.525 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.529 3.471 15 O -0.519 6.519 16 C -0.149 4.149 17 H 0.100 0.900 18 C -0.102 4.102 19 H 0.083 0.917 20 C -0.160 4.160 21 C 0.083 3.917 22 H 0.060 0.940 23 C -0.153 4.153 24 O -0.356 6.356 25 C 0.095 3.905 26 H 0.070 0.930 27 C -0.156 4.156 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.023 0.977 35 H 0.264 0.736 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 -15.197 10.227 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.191 4.191 3 C 0.012 3.988 4 N -0.322 5.322 5 C 0.099 3.901 6 C -0.563 4.563 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.315 3.685 15 O -0.395 6.395 16 C -0.170 4.170 17 H 0.118 0.882 18 C -0.121 4.121 19 H 0.101 0.899 20 C -0.217 4.217 21 C 0.025 3.975 22 H 0.078 0.922 23 C -0.210 4.210 24 O -0.275 6.275 25 C 0.037 3.963 26 H 0.088 0.912 27 C -0.213 4.213 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.162 -14.851 9.511 17.636 hybrid contribution -0.860 -0.344 -0.567 1.086 sum -0.698 -15.195 8.944 17.646 Atomic orbital electron populations 1.23842 0.95841 1.01813 1.00598 1.23543 0.96441 0.99193 0.99900 1.20608 0.93017 0.95273 0.89952 1.47931 1.13506 1.56168 1.14579 1.19621 0.94748 0.94052 0.81679 1.21323 1.39438 0.91780 1.03801 0.90690 1.24843 0.95394 0.94682 0.98042 1.69892 1.47420 1.05157 1.31130 0.86900 0.79903 0.80011 0.83245 1.20188 1.20979 1.18921 1.19690 0.81824 0.79027 0.87938 1.90676 1.48132 1.59364 1.41281 1.23213 1.00008 0.95799 0.98013 0.88237 1.22407 0.96023 0.94429 0.99250 0.89893 1.22182 1.00536 1.01451 0.97495 1.22624 0.92412 0.84920 0.97558 0.92166 1.22032 1.01288 1.00830 0.96890 1.88955 1.42915 1.22892 1.72745 1.22888 0.85065 0.94480 0.93832 0.91179 1.21897 1.01895 0.92246 1.05261 0.88764 0.88232 0.87609 0.89131 0.90708 0.94378 0.95910 0.92623 0.89582 0.92526 0.92771 0.90179 0.92687 0.91835 0.91340 0.92177 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 14.32 29.01 0.42 -1.71 16 2 C -0.17 -2.21 9.25 -36.03 -0.33 -2.54 16 3 C 0.14 2.09 5.46 -5.19 -0.03 2.06 16 4 N -0.59 -11.74 2.45 -176.43 -0.43 -12.18 16 5 C 0.22 5.29 4.17 -5.20 -0.02 5.27 16 6 C -0.52 -14.89 9.94 -34.44 -0.34 -15.24 16 7 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 10 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 14 C 0.53 10.31 3.80 -10.99 -0.04 10.27 16 15 O -0.52 -12.29 13.30 3.59 0.05 -12.24 16 16 C -0.15 -2.21 2.76 -89.76 -0.25 -2.45 16 17 H 0.10 1.24 5.40 -51.93 -0.28 0.96 16 18 C -0.10 -1.32 3.53 -89.09 -0.31 -1.63 16 19 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.16 -2.19 7.00 37.16 0.26 -1.93 16 21 C 0.08 1.14 4.05 -26.16 -0.11 1.03 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 C -0.15 -2.07 8.40 37.16 0.31 -1.76 16 24 O -0.36 -6.05 10.47 -37.20 -0.39 -6.44 16 25 C 0.10 1.44 3.71 -25.68 -0.10 1.34 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 27 C -0.16 -2.60 8.86 37.15 0.33 -2.27 16 28 H 0.09 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.10 1.14 7.84 -52.49 -0.41 0.73 16 30 H 0.11 1.28 6.96 -52.49 -0.37 0.91 16 31 H 0.09 1.46 7.69 -51.93 -0.40 1.06 16 32 H 0.07 1.00 6.45 -51.93 -0.33 0.66 16 33 H 0.04 1.00 6.56 -51.93 -0.34 0.66 16 34 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.09 1.47 4.38 -51.93 -0.23 1.24 16 37 H 0.06 0.64 7.24 -51.93 -0.38 0.26 16 38 H 0.05 0.74 6.96 -51.93 -0.36 0.38 16 39 H 0.08 1.32 6.28 -51.93 -0.33 0.99 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.70 7.07 -51.93 -0.37 0.33 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.80 6.63 -51.93 -0.34 1.45 16 LS Contribution 339.34 15.07 5.11 5.11 Total: -1.00 -33.12 339.34 -6.94 -40.06 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.07 Total: 3.17 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.31 Total: -7.55 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.34 Total: -39.05 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.34 Total: -18.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.12 -6.94 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599962290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.656 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds