Wall clock time and date at job start Tue Mar 31 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46839 * 2 1 4 4 C 1.42900 * 114.00266 * 174.71779 * 3 2 1 5 5 H 1.09008 * 109.47104 * 343.18059 * 4 3 2 6 6 C 1.50698 * 109.47646 * 223.17968 * 4 3 2 7 7 O 1.21287 * 119.99737 * 359.97438 * 6 4 3 8 8 N 1.34773 * 120.00569 * 179.97438 * 6 4 3 9 9 C 1.46926 * 120.62759 * 359.71643 * 8 6 4 10 10 C 1.52758 * 109.00977 * 233.58576 * 9 8 6 11 11 C 1.53044 * 109.38445 * 305.58787 * 10 9 8 12 12 C 1.53038 * 109.53485 * 61.24191 * 11 10 9 13 13 H 1.08999 * 109.52702 * 58.60137 * 12 11 10 14 14 C 1.50698 * 109.49640 * 178.68499 * 12 11 10 15 15 H 1.08007 * 119.99908 * 119.83167 * 14 12 11 16 16 C 1.37874 * 120.00336 * 299.83716 * 14 12 11 17 17 N 1.31520 * 119.99480 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00344 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46969 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46912 * 120.00121 * 18 16 14 21 21 H 1.48502 * 109.47046 * 239.99680 * 18 16 14 22 22 C 1.46922 * 120.63506 * 180.02562 * 8 6 4 23 23 C 1.53000 * 109.47220 * 103.17659 * 4 3 2 24 24 C 1.52994 * 117.50062 * 2.87188 * 23 4 3 25 25 C 1.52992 * 60.00323 * 252.51295 * 24 23 4 26 26 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47170 * 299.99785 * 1 2 3 28 28 H 1.08998 * 109.47423 * 60.00274 * 1 2 3 29 29 H 1.09007 * 109.47261 * 119.99484 * 2 1 3 30 30 H 1.08989 * 109.47311 * 239.99901 * 2 1 3 31 31 H 1.09003 * 109.58917 * 353.41828 * 9 8 6 32 32 H 1.08998 * 109.58824 * 113.84238 * 9 8 6 33 33 H 1.09003 * 109.56786 * 185.55493 * 10 9 8 34 34 H 1.09001 * 109.36128 * 65.50129 * 10 9 8 35 35 H 1.08996 * 109.45819 * 301.21902 * 11 10 9 36 36 H 1.08997 * 109.46136 * 181.26392 * 11 10 9 37 37 H 0.97001 * 119.99626 * 180.02562 * 17 16 14 38 38 H 1.09010 * 109.58500 * 246.15664 * 22 8 6 39 39 H 1.09002 * 109.58876 * 6.57545 * 22 8 6 40 40 H 1.09006 * 115.54972 * 148.58686 * 23 4 3 41 41 H 1.09005 * 117.49730 * 0.02562 * 24 23 4 42 42 H 1.08999 * 117.49869 * 145.01582 * 24 23 4 43 43 H 1.09002 * 117.50151 * 252.51247 * 25 24 23 44 44 H 1.08997 * 117.50086 * 107.48851 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4255 1.4621 0.1202 5 1 3.8368 0.5203 0.4837 6 6 3.7600 2.5645 1.0917 7 8 2.8704 3.1906 1.6281 8 7 5.0475 2.8547 1.3646 9 6 6.1360 2.1010 0.7275 10 6 7.0662 1.5585 1.8110 11 6 7.5365 2.7116 2.7007 12 6 6.3278 3.3600 3.3796 13 1 5.7974 2.6129 3.9701 14 6 6.7947 4.4743 4.2803 15 1 6.4567 5.4856 4.1079 16 6 7.6533 4.2031 5.3244 17 7 8.0645 2.9716 5.5345 18 14 8.2314 5.5843 6.4412 19 1 7.6285 6.8662 5.9959 20 1 7.8142 5.2991 7.8377 21 1 9.7116 5.6855 6.3778 22 6 5.3893 3.9262 2.3099 23 6 4.0286 1.7876 -1.2478 24 6 3.0616 1.9907 -2.4159 25 6 3.9152 0.7233 -2.3411 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 5.7201 1.2712 0.1560 32 1 6.6969 2.7594 0.0643 33 1 7.9295 1.0823 1.3462 34 1 6.5290 0.8280 2.4159 35 1 8.0520 3.4536 2.0911 36 1 8.2180 2.3293 3.4606 37 1 8.6683 2.7807 6.2693 38 1 5.8880 4.7369 1.7786 39 1 4.4809 4.3005 2.7821 40 1 4.9323 2.3968 -1.2303 41 1 1.9957 1.8929 -2.2097 42 1 3.3288 2.7340 -3.1670 43 1 4.7441 0.6326 -3.0431 44 1 3.4110 -0.2087 -2.0858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600093263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:44 Heat of formation + Delta-G solvation = -60.858483 kcal Electronic energy + Delta-G solvation = -23288.081183 eV Core-core repulsion = 20013.200862 eV Total energy + Delta-G solvation = -3274.880321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24003 -38.32522 -36.68421 -36.03198 -33.50298 -31.58815 -31.31480 -30.38048 -27.92020 -25.08685 -24.31365 -23.15587 -22.25086 -21.77836 -21.08602 -19.95684 -18.52027 -17.03304 -16.82688 -16.32324 -16.10782 -15.38182 -14.78541 -14.73868 -14.37692 -13.96617 -13.63958 -13.35732 -12.98318 -12.80398 -12.67337 -12.51935 -12.28979 -12.05616 -12.00552 -11.68096 -11.39748 -11.26333 -11.00098 -10.86837 -10.72117 -10.59841 -10.36559 -10.20494 -9.94441 -9.87369 -9.75936 -9.44212 -9.02512 -8.78624 -8.39543 -7.89859 -6.02764 -4.09597 2.94244 3.13869 3.28628 3.37003 3.41773 3.72045 3.94790 4.42462 4.52055 4.64721 4.79791 4.93061 4.98646 5.06971 5.11392 5.20116 5.27144 5.39111 5.41359 5.50978 5.56943 5.61202 5.75376 5.78403 5.82982 5.97998 6.01776 6.08250 6.14453 6.31673 6.38354 6.46928 6.65614 6.78834 6.93765 7.08570 7.17545 7.32840 7.68614 7.90399 8.00376 8.06691 8.37047 8.66942 8.94377 9.55448 11.02895 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.004173 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.618521 B = 6708.044443 C = 7078.863567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.106 3.894 5 H 0.088 0.912 6 C 0.510 3.490 7 O -0.530 6.530 8 N -0.601 5.601 9 C 0.105 3.895 10 C -0.136 4.136 11 C -0.112 4.112 12 C 0.039 3.961 13 H 0.029 0.971 14 C -0.513 4.513 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.118 3.882 23 C -0.180 4.180 24 C -0.160 4.160 25 C -0.177 4.177 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.095 0.905 37 H 0.260 0.740 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 -8.281 -15.178 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.269 6.269 4 C 0.044 3.956 5 H 0.106 0.894 6 C 0.296 3.704 7 O -0.407 6.407 8 N -0.335 5.335 9 C -0.018 4.018 10 C -0.175 4.175 11 C -0.150 4.150 12 C 0.020 3.980 13 H 0.047 0.953 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.003 4.003 23 C -0.198 4.198 24 C -0.196 4.196 25 C -0.214 4.214 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.139 0.861 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.086 -7.876 -14.781 18.186 hybrid contribution 0.756 0.362 0.678 1.078 sum -6.330 -7.514 -14.103 17.188 Atomic orbital electron populations 1.21720 0.93548 1.02027 1.03395 1.22674 0.95943 0.83956 0.99972 1.88032 1.19180 1.25923 1.93771 1.21349 0.82888 0.98229 0.93113 0.89400 1.20269 0.82889 0.84690 0.82562 1.90677 1.46340 1.51610 1.52031 1.48246 1.04445 1.36221 1.44545 1.21830 0.89079 0.95239 0.95678 1.21951 0.97906 1.00167 0.97434 1.21625 1.00981 0.94707 0.97690 1.18976 0.91499 0.96061 0.91438 0.95280 1.21121 1.27722 0.94172 1.12142 0.92392 1.24935 0.96101 0.95518 0.97263 1.69887 1.34016 1.18391 1.30528 0.86522 0.78348 0.82459 0.80605 1.19704 1.21022 1.21052 1.22003 1.00280 0.87734 0.90258 1.22890 1.02374 1.04816 0.89746 1.22899 0.98446 0.99151 0.99146 1.23026 1.03190 0.93671 1.01514 0.91214 0.91532 0.91893 0.93206 0.93356 0.90758 0.91836 0.92366 0.92445 0.94533 0.88641 0.93052 0.92601 0.90273 0.86097 0.87613 0.88896 0.88488 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.05 0.56 6.46 37.16 0.24 0.80 16 3 O -0.35 -5.23 7.88 -55.14 -0.43 -5.67 16 4 C 0.11 1.54 2.14 -27.88 -0.06 1.48 16 5 H 0.09 1.13 7.13 -51.92 -0.37 0.76 16 6 C 0.51 9.75 7.15 -10.99 -0.08 9.67 16 7 O -0.53 -12.36 15.91 -14.36 -0.23 -12.59 16 8 N -0.60 -11.25 2.97 -173.05 -0.51 -11.76 16 9 C 0.10 1.60 4.72 -3.93 -0.02 1.58 16 10 C -0.14 -2.37 6.06 -26.83 -0.16 -2.54 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 12 C 0.04 0.97 2.25 -91.67 -0.21 0.76 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 14 C -0.51 -13.91 8.56 -34.44 -0.29 -14.20 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 18 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 C 0.12 2.59 5.66 -3.73 -0.02 2.57 16 23 C -0.18 -2.15 4.34 -90.62 -0.39 -2.54 16 24 C -0.16 -1.72 9.86 -26.74 -0.26 -1.98 16 25 C -0.18 -1.63 10.22 -26.73 -0.27 -1.90 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.54 8.01 -51.93 -0.42 0.12 16 30 H 0.05 0.44 6.45 -51.94 -0.34 0.10 16 31 H 0.07 0.92 4.92 -51.93 -0.26 0.67 16 32 H 0.06 0.89 8.06 -51.93 -0.42 0.48 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 2.40 6.05 -51.93 -0.31 2.09 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.08 1.88 7.01 -51.93 -0.36 1.52 16 40 H 0.12 1.46 6.12 -51.93 -0.32 1.14 16 41 H 0.11 1.23 7.02 -51.93 -0.36 0.87 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.78 6.48 -51.93 -0.34 0.44 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -31.02 341.67 -9.06 -40.08 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.26 Total: 1.31 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.38 Total: -8.35 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.11 Total: -36.03 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.66 Total: -18.26 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.02 -9.06 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600093263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.782 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds