Wall clock time and date at job start Tue Mar 31 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46839 * 2 1 4 4 C 1.42900 * 114.00266 * 174.71779 * 3 2 1 5 5 H 1.09008 * 109.47104 * 343.18059 * 4 3 2 6 6 C 1.50698 * 109.47646 * 223.17968 * 4 3 2 7 7 O 1.21287 * 119.99737 * 359.97438 * 6 4 3 8 8 N 1.34773 * 120.00569 * 179.97438 * 6 4 3 9 9 C 1.46926 * 120.62759 * 359.71643 * 8 6 4 10 10 C 1.52758 * 109.00977 * 233.58576 * 9 8 6 11 11 C 1.53044 * 109.38445 * 305.58787 * 10 9 8 12 12 C 1.53038 * 109.53485 * 61.24191 * 11 10 9 13 13 H 1.08999 * 109.52702 * 58.60137 * 12 11 10 14 14 C 1.50698 * 109.49640 * 178.68499 * 12 11 10 15 15 H 1.08007 * 119.99908 * 119.83167 * 14 12 11 16 16 C 1.37874 * 120.00336 * 299.83716 * 14 12 11 17 17 N 1.31520 * 119.99480 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00344 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46969 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46912 * 120.00121 * 18 16 14 21 21 H 1.48502 * 109.47046 * 239.99680 * 18 16 14 22 22 C 1.46922 * 120.63506 * 180.02562 * 8 6 4 23 23 C 1.53000 * 109.47220 * 103.17659 * 4 3 2 24 24 C 1.52994 * 117.50062 * 2.87188 * 23 4 3 25 25 C 1.52992 * 60.00323 * 252.51295 * 24 23 4 26 26 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47170 * 299.99785 * 1 2 3 28 28 H 1.08998 * 109.47423 * 60.00274 * 1 2 3 29 29 H 1.09007 * 109.47261 * 119.99484 * 2 1 3 30 30 H 1.08989 * 109.47311 * 239.99901 * 2 1 3 31 31 H 1.09003 * 109.58917 * 353.41828 * 9 8 6 32 32 H 1.08998 * 109.58824 * 113.84238 * 9 8 6 33 33 H 1.09003 * 109.56786 * 185.55493 * 10 9 8 34 34 H 1.09001 * 109.36128 * 65.50129 * 10 9 8 35 35 H 1.08996 * 109.45819 * 301.21902 * 11 10 9 36 36 H 1.08997 * 109.46136 * 181.26392 * 11 10 9 37 37 H 0.97001 * 119.99626 * 180.02562 * 17 16 14 38 38 H 1.09010 * 109.58500 * 246.15664 * 22 8 6 39 39 H 1.09002 * 109.58876 * 6.57545 * 22 8 6 40 40 H 1.09006 * 115.54972 * 148.58686 * 23 4 3 41 41 H 1.09005 * 117.49730 * 0.02562 * 24 23 4 42 42 H 1.08999 * 117.49869 * 145.01582 * 24 23 4 43 43 H 1.09002 * 117.50151 * 252.51247 * 25 24 23 44 44 H 1.08997 * 117.50086 * 107.48851 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4255 1.4621 0.1202 5 1 3.8368 0.5203 0.4837 6 6 3.7600 2.5645 1.0917 7 8 2.8704 3.1906 1.6281 8 7 5.0475 2.8547 1.3646 9 6 6.1360 2.1010 0.7275 10 6 7.0662 1.5585 1.8110 11 6 7.5365 2.7116 2.7007 12 6 6.3278 3.3600 3.3796 13 1 5.7974 2.6129 3.9701 14 6 6.7947 4.4743 4.2803 15 1 6.4567 5.4856 4.1079 16 6 7.6533 4.2031 5.3244 17 7 8.0645 2.9716 5.5345 18 14 8.2314 5.5843 6.4412 19 1 7.6285 6.8662 5.9959 20 1 7.8142 5.2991 7.8377 21 1 9.7116 5.6855 6.3778 22 6 5.3893 3.9262 2.3099 23 6 4.0286 1.7876 -1.2478 24 6 3.0616 1.9907 -2.4159 25 6 3.9152 0.7233 -2.3411 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 5.7201 1.2712 0.1560 32 1 6.6969 2.7594 0.0643 33 1 7.9295 1.0823 1.3462 34 1 6.5290 0.8280 2.4159 35 1 8.0520 3.4536 2.0911 36 1 8.2180 2.3293 3.4606 37 1 8.6683 2.7807 6.2693 38 1 5.8880 4.7369 1.7786 39 1 4.4809 4.3005 2.7821 40 1 4.9323 2.3968 -1.2303 41 1 1.9957 1.8929 -2.2097 42 1 3.3288 2.7340 -3.1670 43 1 4.7441 0.6326 -3.0431 44 1 3.4110 -0.2087 -2.0858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600093263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:43 Heat of formation + Delta-G solvation = -78.505772 kcal Electronic energy + Delta-G solvation = -23288.846426 eV Core-core repulsion = 20013.200862 eV Total energy + Delta-G solvation = -3275.645564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56730 -39.55708 -38.25729 -36.97422 -35.36380 -33.14711 -32.47376 -31.97013 -29.19591 -26.94639 -25.89401 -23.98140 -23.38714 -22.98718 -22.30203 -21.37357 -20.07196 -18.59825 -18.00416 -17.90930 -17.29214 -16.75175 -16.58912 -15.83999 -15.64320 -15.25650 -15.11134 -14.84014 -14.58716 -14.24829 -13.88012 -13.75760 -13.56711 -13.39015 -13.16875 -12.89718 -12.71465 -12.57973 -12.42871 -12.28932 -12.14304 -11.93990 -11.86632 -11.62429 -11.54580 -11.27988 -11.04718 -10.86563 -10.79756 -10.45358 -10.25289 -9.52881 -8.11942 -6.26937 1.39096 1.41430 1.52581 1.54848 1.82512 2.42165 2.71577 3.00658 3.14763 3.42817 3.67289 3.86048 4.03210 4.11516 4.16122 4.21411 4.26197 4.29804 4.35743 4.42757 4.50290 4.58358 4.60569 4.78730 4.80511 4.84923 4.87277 4.96196 4.99798 5.05835 5.11226 5.22388 5.26900 5.27200 5.36249 5.45904 5.54394 5.60727 5.92099 6.09033 6.14797 6.33560 6.52512 6.82320 7.18068 7.41284 8.92054 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.004173 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.618521 B = 6708.044443 C = 7078.863567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.378 6.378 4 C 0.116 3.884 5 H 0.108 0.892 6 C 0.499 3.501 7 O -0.586 6.586 8 N -0.601 5.601 9 C 0.106 3.894 10 C -0.129 4.129 11 C -0.105 4.105 12 C 0.041 3.959 13 H -0.015 1.015 14 C -0.538 4.538 15 H 0.051 0.949 16 C 0.018 3.982 17 N -0.912 5.912 18 Si 0.955 3.045 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.130 3.870 23 C -0.198 4.198 24 C -0.168 4.168 25 C -0.144 4.144 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.749 -9.722 -17.706 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.297 6.297 4 C 0.055 3.945 5 H 0.125 0.875 6 C 0.288 3.712 7 O -0.466 6.466 8 N -0.334 5.334 9 C -0.015 4.015 10 C -0.167 4.167 11 C -0.144 4.144 12 C 0.022 3.978 13 H 0.003 0.997 14 C -0.577 4.577 15 H 0.069 0.931 16 C -0.181 4.181 17 N -0.552 5.552 18 Si 0.781 3.219 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.200 1.200 22 C 0.007 3.993 23 C -0.217 4.217 24 C -0.205 4.205 25 C -0.181 4.181 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.140 0.860 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.138 0.862 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.239 -9.345 -17.338 20.660 hybrid contribution 0.440 0.798 1.500 1.755 sum -5.799 -8.547 -15.837 18.908 Atomic orbital electron populations 1.21755 0.92827 1.03516 1.02445 1.22946 0.96644 0.82461 1.01236 1.88016 1.19397 1.28434 1.93831 1.21288 0.83341 0.96602 0.93313 0.87453 1.21332 0.82118 0.85194 0.82572 1.90640 1.47861 1.53859 1.54212 1.48303 1.05703 1.35644 1.43759 1.22101 0.87857 0.96512 0.95054 1.21872 0.99566 0.98018 0.97221 1.21420 0.99017 0.96306 0.97609 1.18874 0.92648 0.94561 0.91703 0.99683 1.21464 1.28183 0.94612 1.13439 0.93075 1.25671 0.96142 0.97763 0.98519 1.70015 1.34273 1.19930 1.30939 0.85551 0.78201 0.79683 0.78492 1.19425 1.20884 1.19987 1.21567 0.98234 0.88998 0.90468 1.22813 1.02706 1.07472 0.88715 1.22940 0.97827 1.00997 0.98753 1.23146 1.02824 0.92960 0.99172 0.88476 0.93631 0.91697 0.93284 0.90543 0.86854 0.89583 0.88750 0.93734 0.94200 0.91856 0.92905 0.91809 0.93304 0.85962 0.88869 0.88002 0.86172 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.04 0.86 6.46 71.98 0.47 1.33 16 3 O -0.38 -10.92 7.88 -129.94 -1.02 -11.94 16 4 C 0.12 3.16 2.14 29.85 0.06 3.23 16 5 H 0.11 2.46 7.13 -2.38 -0.02 2.44 16 6 C 0.50 19.24 7.15 87.66 0.63 19.87 16 7 O -0.59 -28.58 15.91 15.99 0.25 -28.33 16 8 N -0.60 -22.44 2.97 -819.81 -2.43 -24.87 16 9 C 0.11 2.95 4.72 86.22 0.41 3.35 16 10 C -0.13 -4.25 6.06 30.53 0.19 -4.06 16 11 C -0.11 -4.70 4.96 30.62 0.15 -4.55 16 12 C 0.04 2.12 2.25 -11.48 -0.03 2.09 16 13 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 14 C -0.54 -30.27 8.56 25.60 0.22 -30.06 16 15 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 16 C 0.02 1.01 5.30 84.65 0.45 1.46 16 17 N -0.91 -52.32 11.32 21.45 0.24 -52.08 16 18 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 C 0.13 5.91 5.66 86.35 0.49 6.39 16 23 C -0.20 -4.11 4.34 -10.80 -0.05 -4.16 16 24 C -0.17 -3.15 9.86 30.59 0.30 -2.85 16 25 C -0.14 -1.97 10.22 30.59 0.31 -1.65 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 0.98 8.01 -2.38 -0.02 0.96 16 30 H 0.08 1.10 6.45 -2.39 -0.02 1.08 16 31 H 0.11 2.33 4.92 -2.39 -0.01 2.32 16 32 H 0.09 2.09 8.06 -2.39 -0.02 2.07 16 33 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 3.25 6.05 -2.39 -0.01 3.23 16 37 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.06 2.76 8.14 -2.38 -0.02 2.75 16 39 H 0.05 2.48 7.01 -2.39 -0.02 2.47 16 40 H 0.12 2.51 6.12 -2.38 -0.01 2.49 16 41 H 0.09 2.00 7.02 -2.38 -0.02 1.99 16 42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.10 1.20 6.48 -2.39 -0.02 1.19 16 Total: -1.00 -72.13 341.67 4.38 -67.75 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.97 Total: 14.99 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 4.34 Total: -11.50 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -2.19 Total: -76.95 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.77 Total: -40.27 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -72.13 4.38 -67.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600093263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.760 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds