Wall clock time and date at job start Tue Mar 31 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46905 * 2 1 4 4 C 1.42897 * 113.99621 * 183.72529 * 3 2 1 5 5 H 1.09003 * 109.47416 * 23.44142 * 4 3 2 6 6 C 1.50701 * 109.47180 * 143.44371 * 4 3 2 7 7 O 1.21281 * 119.99649 * 4.99811 * 6 4 3 8 8 N 1.34776 * 119.99868 * 184.99869 * 6 4 3 9 9 C 1.46991 * 120.61742 * 0.02562 * 8 6 4 10 10 C 1.53186 * 108.74332 * 126.38928 * 9 8 6 11 11 C 1.53046 * 109.33804 * 54.61834 * 10 9 8 12 12 C 1.53038 * 109.53751 * 298.62349 * 11 10 9 13 13 H 1.09004 * 109.49818 * 301.37569 * 12 11 10 14 14 C 1.50700 * 109.49481 * 181.31745 * 12 11 10 15 15 H 1.08000 * 119.99863 * 245.34698 * 14 12 11 16 16 C 1.37877 * 120.00545 * 65.34741 * 14 12 11 17 17 N 1.31522 * 119.99433 * 6.88544 * 16 14 12 18 18 Si 1.86801 * 120.00336 * 186.89159 * 16 14 12 19 19 H 1.48500 * 109.47022 * 94.97962 * 18 16 14 20 20 H 1.48493 * 109.46986 * 214.98130 * 18 16 14 21 21 H 1.48497 * 109.46810 * 334.98340 * 18 16 14 22 22 C 1.46927 * 120.62897 * 179.97438 * 8 6 4 23 23 C 1.53003 * 109.47119 * 263.44197 * 4 3 2 24 24 C 1.53002 * 117.49622 * 8.33880 * 23 4 3 25 25 C 1.53001 * 117.49755 * 299.71785 * 23 4 3 26 26 H 1.08997 * 109.47534 * 300.00236 * 1 2 3 27 27 H 1.08997 * 109.46750 * 60.00740 * 1 2 3 28 28 H 1.09002 * 109.46875 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47453 * 239.99305 * 2 1 3 30 30 H 1.09005 * 109.46422 * 119.99265 * 2 1 3 31 31 H 1.09003 * 109.62668 * 6.59463 * 9 8 6 32 32 H 1.09008 * 109.58280 * 246.15259 * 9 8 6 33 33 H 1.09005 * 109.49432 * 294.65665 * 10 9 8 34 34 H 1.08998 * 109.50545 * 174.58865 * 10 9 8 35 35 H 1.08997 * 109.45554 * 58.64597 * 11 10 9 36 36 H 1.09002 * 109.46191 * 178.60030 * 11 10 9 37 37 H 0.96999 * 119.99733 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.58643 * 113.83818 * 22 8 6 39 39 H 1.09006 * 109.58493 * 353.41863 * 22 8 6 40 40 H 1.08997 * 115.55553 * 154.04582 * 23 4 3 41 41 H 1.09004 * 117.50165 * 359.97438 * 24 23 4 42 42 H 1.09001 * 117.49978 * 145.02280 * 24 23 4 43 43 H 1.08999 * 117.49706 * 214.97884 * 25 23 4 44 44 H 1.09005 * 117.49883 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4283 1.4610 -0.0848 5 1 3.8385 0.5592 -0.5393 6 6 3.7871 2.6567 -0.9290 7 8 2.9155 3.3958 -1.3351 8 7 5.0766 2.9048 -1.2324 9 6 6.1438 2.0176 -0.7478 10 6 6.9861 1.5621 -1.9434 11 6 7.4873 2.7898 -2.7074 12 6 6.2925 3.5873 -3.2350 13 1 5.6895 2.9526 -3.8844 14 6 6.7874 4.7783 -4.0145 15 1 6.5937 5.7779 -3.6543 16 6 7.4875 4.5919 -5.1876 17 7 7.6071 3.3855 -5.6974 18 14 8.2664 6.0529 -6.0527 19 1 9.6873 6.1736 -5.6384 20 1 8.1945 5.8538 -7.5225 21 1 7.5366 7.2927 -5.6848 22 6 5.4421 4.0662 -2.0548 23 6 4.0107 1.6348 1.3193 24 6 3.0597 1.4602 2.5051 25 6 3.5603 2.8551 2.1249 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 5.7036 1.1487 -0.2586 32 1 6.7744 2.5570 -0.0409 33 1 6.3762 0.9462 -2.6045 34 1 7.8378 0.9817 -1.5886 35 1 8.0765 3.4177 -2.0391 36 1 8.1075 2.4686 -3.5443 37 1 8.0999 3.2543 -6.5225 38 1 6.0152 4.7730 -1.4548 39 1 4.5386 4.5487 -2.4277 40 1 5.0402 1.3001 1.4460 41 1 2.0190 1.2220 2.2849 42 1 3.4635 1.0105 3.4122 43 1 4.2935 3.3230 2.7818 44 1 2.8494 3.5344 1.6543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600093264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:45 Heat of formation + Delta-G solvation = -81.140750 kcal Electronic energy + Delta-G solvation = -23332.046117 eV Core-core repulsion = 20056.286291 eV Total energy + Delta-G solvation = -3275.759826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54711 -39.51189 -38.16976 -37.01268 -35.32965 -33.17008 -32.43396 -31.93804 -29.17413 -26.91331 -25.96600 -23.93227 -23.37055 -23.13236 -22.36593 -21.26967 -19.93111 -18.52451 -18.14719 -17.79461 -17.49546 -16.62931 -16.51395 -15.83189 -15.78417 -15.22923 -15.10063 -14.88906 -14.56440 -14.27120 -13.80679 -13.72663 -13.44237 -13.41003 -13.17984 -12.88254 -12.72057 -12.62999 -12.41862 -12.25689 -12.12096 -11.95661 -11.87314 -11.60539 -11.54732 -11.33614 -11.16837 -10.85349 -10.73078 -10.46455 -10.28788 -9.49352 -8.15405 -6.26189 1.39906 1.41125 1.51555 1.60249 1.83280 2.42502 2.72169 2.91654 3.14716 3.55831 3.65983 3.87920 3.99362 4.16633 4.19023 4.21923 4.27031 4.33324 4.36928 4.42947 4.50404 4.54230 4.60156 4.78354 4.81225 4.83472 4.85487 4.96082 5.00471 5.03669 5.10113 5.19692 5.26211 5.28009 5.35009 5.42889 5.54497 5.60810 5.91531 6.02399 6.14319 6.31545 6.55461 6.83886 7.21542 7.41271 8.92504 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.004189 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.535116 B = 6683.069070 C = 6892.978636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.382 6.382 4 C 0.110 3.890 5 H 0.110 0.890 6 C 0.505 3.495 7 O -0.588 6.588 8 N -0.600 5.600 9 C 0.107 3.893 10 C -0.129 4.129 11 C -0.099 4.099 12 C 0.040 3.960 13 H -0.012 1.012 14 C -0.539 4.539 15 H 0.052 0.948 16 C 0.019 3.981 17 N -0.916 5.916 18 Si 0.954 3.046 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.271 1.271 22 C 0.132 3.868 23 C -0.183 4.183 24 C -0.142 4.142 25 C -0.182 4.182 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.262 0.738 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.148 0.852 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.787 -11.023 17.568 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.301 6.301 4 C 0.049 3.951 5 H 0.128 0.872 6 C 0.293 3.707 7 O -0.468 6.468 8 N -0.332 5.332 9 C -0.014 4.014 10 C -0.167 4.167 11 C -0.137 4.137 12 C 0.021 3.979 13 H 0.006 0.994 14 C -0.578 4.578 15 H 0.070 0.930 16 C -0.181 4.181 17 N -0.554 5.554 18 Si 0.779 3.221 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.196 1.196 22 C 0.009 3.991 23 C -0.202 4.202 24 C -0.179 4.179 25 C -0.219 4.219 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.166 0.834 41 H 0.113 0.887 42 H 0.141 0.859 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.305 -10.579 17.225 20.898 hybrid contribution 0.453 0.936 -1.426 1.765 sum -4.852 -9.643 15.799 19.134 Atomic orbital electron populations 1.21759 0.92954 1.03504 1.02347 1.22894 0.96414 0.82318 1.01488 1.88005 1.19133 1.28628 1.94356 1.21353 0.83369 0.95839 0.94570 0.87208 1.21175 0.82030 0.87185 0.80292 1.90641 1.49165 1.51173 1.55810 1.48257 1.06159 1.27962 1.50839 1.22163 0.88813 0.94124 0.96297 1.21948 1.00017 0.97866 0.96910 1.21356 0.98431 0.95739 0.98165 1.18873 0.92958 0.94846 0.91206 0.99353 1.21435 1.35550 0.93087 1.07692 0.92980 1.25681 0.96716 0.98267 0.97391 1.70080 1.41927 1.22721 1.20712 0.85611 0.79141 0.79838 0.77498 1.19502 1.21083 1.19585 1.21539 0.98102 0.87121 0.92316 1.22911 1.01404 1.05824 0.90017 1.23009 0.99443 0.98063 0.97365 1.22841 1.03847 0.91637 1.03609 0.91877 0.93678 0.88408 0.93078 0.90415 0.86941 0.89307 0.93760 0.88563 0.93564 0.93632 0.92942 0.91750 0.93522 0.83410 0.88690 0.85862 0.87193 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.04 0.88 5.88 71.98 0.42 1.31 16 3 O -0.38 -11.08 8.16 -129.99 -1.06 -12.14 16 4 C 0.11 2.96 2.15 29.85 0.06 3.02 16 5 H 0.11 2.41 6.95 -2.39 -0.02 2.40 16 6 C 0.50 19.25 6.76 87.66 0.59 19.84 16 7 O -0.59 -28.69 15.92 15.96 0.25 -28.43 16 8 N -0.60 -22.07 2.97 -818.82 -2.44 -24.50 16 9 C 0.11 2.86 5.51 86.35 0.48 3.34 16 10 C -0.13 -4.15 6.08 30.67 0.19 -3.96 16 11 C -0.10 -4.32 5.01 30.62 0.15 -4.16 16 12 C 0.04 2.06 2.12 -11.48 -0.02 2.04 16 13 H -0.01 -0.70 8.11 -2.38 -0.02 -0.72 16 14 C -0.54 -30.30 8.49 25.60 0.22 -30.08 16 15 H 0.05 2.90 7.76 -2.91 -0.02 2.88 16 16 C 0.02 1.05 5.23 84.65 0.44 1.49 16 17 N -0.92 -53.35 12.03 21.45 0.26 -53.10 16 18 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 C 0.13 5.96 5.66 86.34 0.49 6.45 16 23 C -0.18 -3.63 4.83 -10.79 -0.05 -3.69 16 24 C -0.14 -2.40 9.54 30.60 0.29 -2.11 16 25 C -0.18 -4.09 9.80 30.60 0.30 -3.79 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 0.98 8.02 -2.39 -0.02 0.96 16 30 H 0.08 1.11 7.55 -2.38 -0.02 1.10 16 31 H 0.11 2.11 4.48 -2.39 -0.01 2.10 16 32 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 36 H 0.04 2.29 6.76 -2.39 -0.02 2.27 16 37 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 39 H 0.05 2.38 7.01 -2.38 -0.02 2.37 16 40 H 0.15 2.07 6.59 -2.39 -0.02 2.05 16 41 H 0.09 1.78 6.31 -2.39 -0.02 1.77 16 42 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -73.89 344.70 4.31 -69.58 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.97 Total: 14.71 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 4.30 Total: -12.18 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.18 Total: -77.60 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.81 Total: -40.57 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -73.89 4.31 -69.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600093264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.560 kcal (2) G-P(sol) polarization free energy of solvation -73.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds