Wall clock time and date at job start Tue Mar 31 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47102 * 2 1 4 4 C 1.42896 * 113.99973 * 183.77273 * 3 2 1 5 5 H 1.08997 * 109.47111 * 24.28838 * 4 3 2 6 6 C 1.50700 * 109.46708 * 144.28925 * 4 3 2 7 7 O 1.21282 * 120.00769 * 13.74981 * 6 4 3 8 8 N 1.34779 * 119.99946 * 193.74518 * 6 4 3 9 9 C 1.46932 * 120.62756 * 354.76906 * 8 6 4 10 10 C 1.52763 * 109.00663 * 233.58203 * 9 8 6 11 11 C 1.53035 * 109.38559 * 305.58764 * 10 9 8 12 12 C 1.53050 * 109.53756 * 61.24142 * 11 10 9 13 13 H 1.08991 * 109.52289 * 58.60231 * 12 11 10 14 14 C 1.50695 * 109.49602 * 178.68437 * 12 11 10 15 15 H 1.08000 * 120.00078 * 119.84220 * 14 12 11 16 16 C 1.37873 * 120.00284 * 299.83339 * 14 12 11 17 17 N 1.31520 * 119.99844 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00402 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47370 * 120.00177 * 18 16 14 21 21 H 1.48504 * 109.47374 * 240.00439 * 18 16 14 22 22 C 1.46927 * 120.63345 * 175.04866 * 8 6 4 23 23 C 1.53002 * 109.47052 * 264.28750 * 4 3 2 24 24 C 1.52999 * 117.49941 * 10.55451 * 23 4 3 25 25 C 1.53000 * 117.49934 * 301.89378 * 23 4 3 26 26 H 1.09002 * 109.46800 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47294 * 300.00270 * 1 2 3 28 28 H 1.09004 * 109.46993 * 59.99969 * 1 2 3 29 29 H 1.09001 * 109.46896 * 239.99967 * 2 1 3 30 30 H 1.09000 * 109.46940 * 119.99523 * 2 1 3 31 31 H 1.09000 * 109.58474 * 353.41590 * 9 8 6 32 32 H 1.08997 * 109.58703 * 113.84371 * 9 8 6 33 33 H 1.09001 * 109.56285 * 185.55299 * 10 9 8 34 34 H 1.09005 * 109.38702 * 65.51693 * 10 9 8 35 35 H 1.09004 * 109.46436 * 301.22330 * 11 10 9 36 36 H 1.09002 * 109.46590 * 181.26011 * 11 10 9 37 37 H 0.97005 * 119.99550 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.58355 * 246.15670 * 22 8 6 39 39 H 1.08998 * 109.58328 * 6.57925 * 22 8 6 40 40 H 1.08999 * 115.54633 * 156.22371 * 23 4 3 41 41 H 1.09004 * 117.49636 * 359.97438 * 24 23 4 42 42 H 1.08998 * 117.49780 * 145.01329 * 24 23 4 43 43 H 1.09002 * 117.49564 * 214.97735 * 25 23 4 44 44 H 1.08997 * 117.50209 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4282 1.4611 -0.0859 5 1 3.8367 0.5658 -0.5546 6 6 3.7863 2.6690 -0.9127 7 8 2.9408 3.4988 -1.1722 8 7 5.0465 2.8273 -1.3639 9 6 6.1076 1.8929 -0.9641 10 6 7.2763 2.6865 -0.3828 11 6 7.7206 3.7485 -1.3911 12 6 6.5645 4.7148 -1.6597 13 1 6.2547 5.1810 -0.7245 14 6 7.0129 5.7789 -2.6279 15 1 6.5092 5.8929 -3.5764 16 6 8.0662 6.6071 -2.3029 17 7 8.6799 6.4680 -1.1480 18 14 8.6216 7.9266 -3.5028 19 1 7.7737 7.8766 -4.7210 20 1 8.4929 9.2615 -2.8651 21 1 10.0396 7.6910 -3.8762 22 6 5.3865 3.9409 -2.2600 23 6 4.0135 1.6133 1.3195 24 6 3.0770 1.3708 2.5049 25 6 3.5273 2.7934 2.1633 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.7240 1.2051 -0.2105 32 1 6.4476 1.3319 -1.8346 33 1 8.1073 2.0126 -0.1743 34 1 6.9605 3.1714 0.5410 35 1 8.0134 3.2647 -2.3230 36 1 8.5689 4.3009 -0.9869 37 1 9.4207 7.0510 -0.9192 38 1 5.6665 3.5502 -3.2383 39 1 4.5273 4.6039 -2.3612 40 1 5.0546 1.3104 1.4305 41 1 2.0438 1.1032 2.2834 42 1 3.5021 0.9086 3.3958 43 1 4.2485 3.2665 2.8297 44 1 2.7908 3.4615 1.7171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600093265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:49 Heat of formation + Delta-G solvation = -61.423853 kcal Electronic energy + Delta-G solvation = -23419.614981 eV Core-core repulsion = 20144.710144 eV Total energy + Delta-G solvation = -3274.904837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.21191 -38.26881 -36.56657 -36.00483 -33.49189 -31.56895 -31.30528 -30.35902 -27.88544 -25.06259 -24.35381 -23.10467 -22.20071 -21.68463 -21.08855 -19.92505 -18.31206 -17.06618 -16.77104 -16.44793 -16.13328 -15.12533 -14.93732 -14.68996 -14.48464 -13.88965 -13.62418 -13.22740 -13.01975 -12.71975 -12.64212 -12.45028 -12.29984 -12.07001 -11.99737 -11.48677 -11.27915 -11.22716 -10.99772 -10.83920 -10.71106 -10.48517 -10.42740 -10.20574 -9.95769 -9.78728 -9.73507 -9.42954 -9.03139 -8.77240 -8.38388 -7.87562 -6.01573 -4.08390 3.00799 3.10819 3.29189 3.37568 3.42144 3.73712 4.03140 4.43384 4.59919 4.79892 4.84977 4.93686 5.06805 5.10331 5.21620 5.27929 5.28382 5.32740 5.40030 5.54777 5.62473 5.69861 5.76471 5.78799 5.94726 5.98761 6.07967 6.16797 6.31129 6.32701 6.39452 6.48153 6.66460 6.80001 6.94893 7.10115 7.19018 7.34242 7.69873 7.92438 8.02276 8.08017 8.38391 8.68298 8.95573 9.56531 11.03999 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028927 B = 0.004275 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.725001 B = 6548.720246 C = 6848.462372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.106 3.894 5 H 0.084 0.916 6 C 0.515 3.485 7 O -0.530 6.530 8 N -0.600 5.600 9 C 0.105 3.895 10 C -0.134 4.134 11 C -0.112 4.112 12 C 0.040 3.960 13 H 0.030 0.970 14 C -0.513 4.513 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.118 3.882 23 C -0.184 4.184 24 C -0.168 4.168 25 C -0.160 4.160 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.095 0.905 37 H 0.259 0.741 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 -15.568 5.484 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.044 3.956 5 H 0.101 0.899 6 C 0.301 3.699 7 O -0.406 6.406 8 N -0.334 5.334 9 C -0.018 4.018 10 C -0.172 4.172 11 C -0.150 4.150 12 C 0.021 3.979 13 H 0.048 0.952 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.002 4.002 23 C -0.203 4.203 24 C -0.205 4.205 25 C -0.197 4.197 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.517 -14.882 5.439 17.989 hybrid contribution 0.792 0.413 -0.578 1.064 sum -7.725 -14.469 4.861 17.107 Atomic orbital electron populations 1.21724 0.93611 1.01983 1.03397 1.22626 0.95766 0.83987 1.00098 1.88035 1.18916 1.25879 1.94267 1.21372 0.82782 0.97458 0.93980 0.89864 1.20153 0.82592 0.87143 0.80025 1.90672 1.48521 1.43630 1.57812 1.48203 1.07185 1.29764 1.48237 1.21767 0.89174 0.91751 0.99133 1.21917 0.95964 0.98849 1.00514 1.21622 1.02521 0.94928 0.95890 1.18970 0.89656 0.92483 0.96785 0.95168 1.21121 1.15653 1.15365 1.03017 0.92436 1.24934 0.96366 0.97267 0.95254 1.69889 1.22804 1.38709 1.21376 0.86530 0.78393 0.81719 0.81330 1.19725 1.21029 1.21063 1.22005 1.00302 0.86820 0.91121 1.22777 0.99517 1.06887 0.91091 1.22954 1.00030 1.00106 0.97408 1.22910 1.03470 0.91131 1.02185 0.91210 0.91809 0.91694 0.93438 0.93039 0.91096 0.92032 0.92484 0.92282 0.94607 0.88641 0.93067 0.92665 0.90288 0.86375 0.88080 0.88997 0.88688 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.05 0.54 5.83 37.16 0.22 0.76 16 3 O -0.35 -5.21 8.27 -54.75 -0.45 -5.66 16 4 C 0.11 1.53 2.12 -27.88 -0.06 1.47 16 5 H 0.08 1.00 6.97 -51.93 -0.36 0.64 16 6 C 0.51 9.78 6.72 -10.98 -0.07 9.70 16 7 O -0.53 -12.27 15.97 -13.97 -0.22 -12.49 16 8 N -0.60 -11.25 2.98 -173.02 -0.52 -11.77 16 9 C 0.10 1.60 6.00 -3.93 -0.02 1.58 16 10 C -0.13 -2.34 6.06 -26.83 -0.16 -2.50 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 12 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 13 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.51 -13.93 8.56 -34.44 -0.29 -14.23 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.12 2.59 5.67 -3.71 -0.02 2.57 16 23 C -0.18 -2.37 5.05 -90.62 -0.46 -2.83 16 24 C -0.17 -1.89 9.48 -26.69 -0.25 -2.14 16 25 C -0.16 -2.24 9.84 -26.69 -0.26 -2.50 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.46 8.01 -51.93 -0.42 0.04 16 30 H 0.05 0.46 7.28 -51.93 -0.38 0.08 16 31 H 0.07 0.87 4.12 -51.93 -0.21 0.66 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 2.41 6.05 -51.93 -0.31 2.10 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.88 7.00 -51.93 -0.36 1.52 16 40 H 0.12 1.36 6.62 -51.93 -0.34 1.02 16 41 H 0.10 1.15 6.11 -51.93 -0.32 0.83 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -31.02 343.45 -9.18 -40.19 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.32 Total: 2.02 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.44 Total: -9.29 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.11 Total: -36.07 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.68 Total: -18.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.02 -9.18 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600093265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.230 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds