Wall clock time and date at job start Tue Mar 31 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47102 * 2 1 4 4 C 1.42896 * 113.99973 * 183.77273 * 3 2 1 5 5 H 1.08997 * 109.47111 * 24.28838 * 4 3 2 6 6 C 1.50700 * 109.46708 * 144.28925 * 4 3 2 7 7 O 1.21282 * 120.00769 * 13.74981 * 6 4 3 8 8 N 1.34779 * 119.99946 * 193.74518 * 6 4 3 9 9 C 1.46932 * 120.62756 * 354.76906 * 8 6 4 10 10 C 1.52763 * 109.00663 * 233.58203 * 9 8 6 11 11 C 1.53035 * 109.38559 * 305.58764 * 10 9 8 12 12 C 1.53050 * 109.53756 * 61.24142 * 11 10 9 13 13 H 1.08991 * 109.52289 * 58.60231 * 12 11 10 14 14 C 1.50695 * 109.49602 * 178.68437 * 12 11 10 15 15 H 1.08000 * 120.00078 * 119.84220 * 14 12 11 16 16 C 1.37873 * 120.00284 * 299.83339 * 14 12 11 17 17 N 1.31520 * 119.99844 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00402 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47370 * 120.00177 * 18 16 14 21 21 H 1.48504 * 109.47374 * 240.00439 * 18 16 14 22 22 C 1.46927 * 120.63345 * 175.04866 * 8 6 4 23 23 C 1.53002 * 109.47052 * 264.28750 * 4 3 2 24 24 C 1.52999 * 117.49941 * 10.55451 * 23 4 3 25 25 C 1.53000 * 117.49934 * 301.89378 * 23 4 3 26 26 H 1.09002 * 109.46800 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47294 * 300.00270 * 1 2 3 28 28 H 1.09004 * 109.46993 * 59.99969 * 1 2 3 29 29 H 1.09001 * 109.46896 * 239.99967 * 2 1 3 30 30 H 1.09000 * 109.46940 * 119.99523 * 2 1 3 31 31 H 1.09000 * 109.58474 * 353.41590 * 9 8 6 32 32 H 1.08997 * 109.58703 * 113.84371 * 9 8 6 33 33 H 1.09001 * 109.56285 * 185.55299 * 10 9 8 34 34 H 1.09005 * 109.38702 * 65.51693 * 10 9 8 35 35 H 1.09004 * 109.46436 * 301.22330 * 11 10 9 36 36 H 1.09002 * 109.46590 * 181.26011 * 11 10 9 37 37 H 0.97005 * 119.99550 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.58355 * 246.15670 * 22 8 6 39 39 H 1.08998 * 109.58328 * 6.57925 * 22 8 6 40 40 H 1.08999 * 115.54633 * 156.22371 * 23 4 3 41 41 H 1.09004 * 117.49636 * 359.97438 * 24 23 4 42 42 H 1.08998 * 117.49780 * 145.01329 * 24 23 4 43 43 H 1.09002 * 117.49564 * 214.97735 * 25 23 4 44 44 H 1.08997 * 117.50209 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4282 1.4611 -0.0859 5 1 3.8367 0.5658 -0.5546 6 6 3.7863 2.6690 -0.9127 7 8 2.9408 3.4988 -1.1722 8 7 5.0465 2.8273 -1.3639 9 6 6.1076 1.8929 -0.9641 10 6 7.2763 2.6865 -0.3828 11 6 7.7206 3.7485 -1.3911 12 6 6.5645 4.7148 -1.6597 13 1 6.2547 5.1810 -0.7245 14 6 7.0129 5.7789 -2.6279 15 1 6.5092 5.8929 -3.5764 16 6 8.0662 6.6071 -2.3029 17 7 8.6799 6.4680 -1.1480 18 14 8.6216 7.9266 -3.5028 19 1 7.7737 7.8766 -4.7210 20 1 8.4929 9.2615 -2.8651 21 1 10.0396 7.6910 -3.8762 22 6 5.3865 3.9409 -2.2600 23 6 4.0135 1.6133 1.3195 24 6 3.0770 1.3708 2.5049 25 6 3.5273 2.7934 2.1633 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.7240 1.2051 -0.2105 32 1 6.4476 1.3319 -1.8346 33 1 8.1073 2.0126 -0.1743 34 1 6.9605 3.1714 0.5410 35 1 8.0134 3.2647 -2.3230 36 1 8.5689 4.3009 -0.9869 37 1 9.4207 7.0510 -0.9192 38 1 5.6665 3.5502 -3.2383 39 1 4.5273 4.6039 -2.3612 40 1 5.0546 1.3104 1.4305 41 1 2.0438 1.1032 2.2834 42 1 3.5021 0.9086 3.3958 43 1 4.2485 3.2665 2.8297 44 1 2.7908 3.4615 1.7171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600093265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:48 Heat of formation + Delta-G solvation = -79.233484 kcal Electronic energy + Delta-G solvation = -23420.387264 eV Core-core repulsion = 20144.710144 eV Total energy + Delta-G solvation = -3275.677120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55100 -39.53106 -38.17467 -36.99578 -35.37070 -33.13113 -32.43258 -31.94154 -29.16788 -26.93425 -25.93601 -23.94364 -23.34380 -23.14862 -22.28115 -21.45263 -19.83197 -18.56127 -18.11202 -17.79520 -17.53118 -16.60399 -16.47500 -15.90330 -15.81723 -15.27575 -15.07660 -14.78766 -14.59771 -14.24914 -13.82177 -13.73022 -13.47897 -13.37484 -13.15084 -12.89343 -12.71905 -12.59169 -12.40661 -12.26865 -12.09871 -11.92220 -11.84781 -11.62868 -11.58988 -11.33108 -11.16390 -10.83104 -10.72950 -10.44772 -10.29814 -9.49534 -8.11264 -6.26314 1.38942 1.41313 1.52348 1.57414 1.83759 2.42344 2.72452 2.90232 3.15269 3.56301 3.63674 3.85217 3.98091 4.16402 4.20770 4.24548 4.26849 4.30242 4.36073 4.45961 4.52830 4.54598 4.61356 4.78727 4.79821 4.83635 4.86897 4.95004 4.98961 5.05201 5.12236 5.18025 5.26298 5.28480 5.33239 5.47156 5.56777 5.61372 5.93866 6.11698 6.17900 6.34495 6.55789 6.83231 7.21091 7.41800 8.92561 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028927 B = 0.004275 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.725001 B = 6548.720246 C = 6848.462372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.383 6.383 4 C 0.114 3.886 5 H 0.120 0.880 6 C 0.505 3.495 7 O -0.585 6.585 8 N -0.602 5.602 9 C 0.104 3.896 10 C -0.126 4.126 11 C -0.105 4.105 12 C 0.042 3.958 13 H -0.017 1.017 14 C -0.538 4.538 15 H 0.051 0.949 16 C 0.018 3.982 17 N -0.912 5.912 18 Si 0.955 3.045 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.274 1.274 22 C 0.130 3.870 23 C -0.184 4.184 24 C -0.134 4.134 25 C -0.191 4.191 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.142 0.858 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 -18.866 5.998 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.302 6.302 4 C 0.053 3.947 5 H 0.138 0.862 6 C 0.294 3.706 7 O -0.465 6.465 8 N -0.335 5.335 9 C -0.017 4.017 10 C -0.164 4.164 11 C -0.143 4.143 12 C 0.023 3.977 13 H 0.002 0.998 14 C -0.577 4.577 15 H 0.069 0.931 16 C -0.182 4.182 17 N -0.551 5.551 18 Si 0.780 3.220 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.007 3.993 23 C -0.202 4.202 24 C -0.171 4.171 25 C -0.228 4.228 26 H 0.117 0.883 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.159 0.841 41 H 0.119 0.881 42 H 0.141 0.859 43 H 0.116 0.884 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.904 -18.220 5.963 20.736 hybrid contribution 0.549 1.483 -0.727 1.740 sum -7.354 -16.737 5.236 19.016 Atomic orbital electron populations 1.21766 0.93066 1.03508 1.02302 1.22930 0.96303 0.82222 1.01779 1.88029 1.18997 1.28819 1.94387 1.21334 0.83395 0.95890 0.94119 0.86212 1.21187 0.81818 0.88105 0.79503 1.90639 1.50125 1.45970 1.59803 1.48273 1.08410 1.29231 1.47546 1.22053 0.87289 0.91137 1.01251 1.21825 0.98143 0.98152 0.98301 1.21413 1.00081 0.95489 0.97321 1.18862 0.91670 0.92976 0.94179 0.99844 1.21472 1.16016 1.16833 1.03366 0.93088 1.25677 0.96399 0.99211 0.96870 1.70020 1.23038 1.39393 1.22683 0.85557 0.78269 0.78879 0.79248 1.19397 1.20958 1.19958 1.21566 0.97850 0.87638 0.92209 1.22903 1.01005 1.05824 0.90514 1.23027 0.99849 0.96819 0.97401 1.22808 1.03817 0.92317 1.03897 0.88315 0.92308 0.93439 0.92244 0.90652 0.86955 0.89566 0.88795 0.93731 0.94207 0.91933 0.92941 0.91663 0.93437 0.84062 0.88082 0.85945 0.88423 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.04 0.78 5.83 71.98 0.42 1.20 16 3 O -0.38 -10.78 8.27 -130.31 -1.08 -11.86 16 4 C 0.11 3.02 2.12 29.85 0.06 3.09 16 5 H 0.12 2.29 6.97 -2.39 -0.02 2.28 16 6 C 0.51 19.21 6.72 87.66 0.59 19.80 16 7 O -0.59 -28.47 15.97 15.63 0.25 -28.22 16 8 N -0.60 -22.28 2.98 -819.71 -2.44 -24.72 16 9 C 0.10 2.83 6.00 86.22 0.52 3.35 16 10 C -0.13 -4.14 6.06 30.53 0.19 -3.95 16 11 C -0.10 -4.68 4.96 30.62 0.15 -4.53 16 12 C 0.04 2.18 2.25 -11.46 -0.03 2.15 16 13 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 14 C -0.54 -30.36 8.56 25.60 0.22 -30.14 16 15 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 16 C 0.02 0.98 5.30 84.65 0.45 1.43 16 17 N -0.91 -52.56 11.32 21.45 0.24 -52.31 16 18 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C 0.13 5.90 5.67 86.36 0.49 6.39 16 23 C -0.18 -4.20 5.05 -10.79 -0.05 -4.25 16 24 C -0.13 -2.60 9.48 30.62 0.29 -2.31 16 25 C -0.19 -5.29 9.84 30.62 0.30 -4.99 16 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 0.92 8.01 -2.39 -0.02 0.90 16 30 H 0.08 1.00 7.28 -2.39 -0.02 0.98 16 31 H 0.11 2.18 4.12 -2.39 -0.01 2.17 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 3.22 6.05 -2.39 -0.01 3.20 16 37 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 38 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.05 2.42 7.00 -2.39 -0.02 2.40 16 40 H 0.14 2.57 6.62 -2.39 -0.02 2.55 16 41 H 0.10 1.99 6.11 -2.39 -0.01 1.98 16 42 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -73.45 343.45 4.30 -69.14 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.97 Total: 16.26 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.34 Total: -14.44 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -2.20 Total: -77.04 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.83 Total: -40.08 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.45 4.30 -69.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600093265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.092 kcal (2) G-P(sol) polarization free energy of solvation -73.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds